Wall clock time and date at job start Tue Mar 31 2020 03:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47759 * 2 1 4 4 C 1.53003 * 109.46782 * 119.99813 * 2 1 3 5 5 C 1.53001 * 109.47103 * 184.99647 * 4 2 1 6 6 C 1.53001 * 109.47454 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47209 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.46947 * 179.97438 * 7 6 5 9 9 C 1.36938 * 119.99873 * 179.97438 * 8 7 6 10 10 H 1.07991 * 119.99878 * 359.97438 * 9 8 7 11 11 C 1.38815 * 119.99772 * 179.97438 * 9 8 7 12 12 N 1.31615 * 119.99941 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99963 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47202 * 90.00169 * 13 11 9 15 15 H 1.48498 * 109.47341 * 210.00341 * 13 11 9 16 16 H 1.48503 * 109.47077 * 330.00176 * 13 11 9 17 17 N 1.46497 * 109.47259 * 239.99408 * 2 1 3 18 18 C 1.34787 * 119.99650 * 85.00342 * 17 2 1 19 19 O 1.21275 * 119.99611 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99828 * 180.02562 * 18 17 2 21 21 C 1.50698 * 109.47030 * 179.97438 * 20 18 17 22 22 C 1.39870 * 125.89873 * 124.99889 * 21 20 18 23 23 C 1.35318 * 107.92236 * 179.76106 * 22 21 20 24 24 N 1.34948 * 107.74290 * 0.42279 * 23 22 21 25 25 H 0.97001 * 126.03958 * 179.84649 * 24 23 22 26 26 N 1.30835 * 125.89830 * 305.02686 * 21 20 18 27 27 H 1.09002 * 109.47113 * 300.00257 * 1 2 3 28 28 H 1.09004 * 109.46866 * 59.99730 * 1 2 3 29 29 H 1.08988 * 109.47388 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47464 * 304.99614 * 4 2 1 31 31 H 1.09001 * 109.47387 * 64.99972 * 4 2 1 32 32 H 1.08998 * 109.47569 * 300.00701 * 5 4 2 33 33 H 1.09001 * 109.46734 * 59.99925 * 5 4 2 34 34 H 1.09006 * 109.46725 * 300.00443 * 6 5 4 35 35 H 1.08996 * 109.46849 * 59.99987 * 6 5 4 36 36 H 1.08999 * 109.46926 * 299.99413 * 7 6 5 37 37 H 1.08996 * 109.47629 * 59.99971 * 7 6 5 38 38 H 0.97008 * 120.00146 * 359.97438 * 8 7 6 39 39 H 0.97001 * 119.99992 * 179.97438 * 12 11 9 40 40 H 0.97003 * 120.00382 * 265.00692 * 17 2 1 41 41 H 1.09002 * 109.47553 * 59.99600 * 20 18 17 42 42 H 1.09004 * 109.47119 * 300.00033 * 20 18 17 43 43 H 1.08008 * 126.03860 * 0.02562 * 22 21 20 44 44 H 1.07999 * 126.12849 * 180.26834 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6134 1.3138 6 6 4.0748 -1.3351 2.5627 7 6 5.5996 -1.2267 2.6275 8 7 6.0879 -1.9173 3.8237 9 6 7.4299 -1.9537 4.0934 10 1 8.1284 -1.4737 3.4240 11 6 7.8925 -2.6076 5.2271 12 7 7.0413 -3.1930 6.0425 13 14 9.7232 -2.6567 5.5954 14 1 10.0928 -1.4820 6.4252 15 1 10.0466 -3.9047 6.3323 16 1 10.4855 -2.6225 4.3214 17 7 2.0184 -0.6907 -1.1961 18 6 2.1471 -0.0183 -2.3571 19 8 1.8592 1.1585 -2.4114 20 6 2.6489 -0.7290 -3.5877 21 6 2.6992 0.2392 -4.7414 22 6 3.8203 0.5176 -5.5301 23 6 3.4587 1.4322 -6.4596 24 7 2.1575 1.7291 -6.2600 25 1 1.6298 2.3576 -6.7771 26 7 1.7019 0.9649 -5.1779 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0275 0.0005 30 1 1.6054 -0.2617 2.1370 31 1 1.7516 -1.7715 1.2057 32 1 3.9994 -1.0728 0.4261 33 1 3.8531 0.4369 1.3574 34 1 3.6401 -0.8759 3.4506 35 1 3.7864 -2.3853 2.5186 36 1 6.0345 -1.6857 1.7396 37 1 5.8877 -0.1764 2.6717 38 1 5.4605 -2.3488 4.4248 39 1 7.3645 -3.6503 6.8346 40 1 2.2490 -1.6319 -1.1525 41 1 1.9761 -1.5508 -3.8325 42 1 3.6481 -1.1216 -3.3985 43 1 4.8002 0.0770 -5.4198 44 1 4.0977 1.8513 -7.2228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169936967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:30 Heat of formation + Delta-G solvation = 25.307086 kcal Electronic energy + Delta-G solvation = -22524.448958 eV Core-core repulsion = 19091.945757 eV Total energy + Delta-G solvation = -3432.503201 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.43024 -39.79020 -36.93262 -35.21113 -33.34001 -33.10656 -31.50890 -30.29794 -30.17368 -28.51054 -27.40340 -24.22075 -22.62396 -21.88123 -21.25498 -20.71646 -20.55062 -19.73141 -18.37920 -17.21660 -16.97459 -16.33968 -15.53685 -15.03678 -14.76683 -14.68400 -14.20508 -13.96674 -13.77719 -13.71208 -13.42598 -13.20813 -13.06116 -12.91347 -12.80938 -12.27231 -12.23877 -11.71895 -11.40100 -11.22011 -10.95347 -10.87468 -10.79046 -10.66581 -10.38711 -10.26631 -9.98183 -9.95299 -9.64236 -9.59412 -9.12693 -8.96775 -8.83347 -6.87685 -5.73127 -3.01351 1.67147 2.43662 2.59734 2.63442 3.17572 3.45855 3.50592 3.52518 4.28374 4.49257 4.56309 4.66946 4.83989 4.88002 4.98417 5.04394 5.11734 5.31695 5.38274 5.47097 5.48307 5.51377 5.58152 5.66774 5.71275 5.75214 5.83645 5.96749 6.01370 6.16442 6.28560 6.33548 6.34885 6.41968 6.47668 6.50794 6.93256 6.97199 7.01799 7.41145 7.45332 7.73285 8.17499 8.46385 9.56994 10.16633 10.51149 11.50027 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.002333 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.992398 B =11997.300711 C =13245.784425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.087 0.913 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.725 5.725 18 C 0.516 3.484 19 O -0.526 6.526 20 C -0.063 4.063 21 C 0.086 3.914 22 C -0.265 4.265 23 C 0.053 3.947 24 N -0.479 5.479 25 H 0.438 0.562 26 N -0.264 5.264 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.400 0.600 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.149 0.851 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.244 5.863 -24.606 28.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.105 0.895 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.213 4.213 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.377 5.377 18 C 0.301 3.699 19 O -0.401 6.401 20 C -0.104 4.104 21 C -0.082 4.082 22 C -0.295 4.295 23 C -0.094 4.094 24 N -0.187 5.187 25 H 0.281 0.719 26 N -0.087 5.087 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.216 0.784 39 H 0.064 0.936 40 H 0.235 0.765 41 H 0.127 0.873 42 H 0.133 0.867 43 H 0.167 0.833 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -14.476 7.052 -24.504 29.321 hybrid contribution 1.633 -0.505 0.077 1.711 sum -12.843 6.547 -24.427 28.364 Atomic orbital electron populations 1.22171 0.95526 1.02002 1.02410 1.21006 0.93640 0.97674 0.83884 0.89502 1.21937 0.96842 1.00925 0.96749 1.21516 0.93990 1.01055 0.98612 1.21729 0.97209 1.00267 0.97150 1.20651 0.91049 0.95301 0.90528 1.42401 1.05332 1.64976 1.25220 1.19256 0.83944 1.28297 1.05394 0.91232 1.24754 0.97737 1.01031 0.97745 1.69662 1.32760 1.40842 1.15129 0.86174 0.85092 0.77006 0.77851 1.21742 1.21776 1.20773 1.46080 1.67916 1.14101 1.09643 1.20335 0.77806 0.87501 0.84254 1.90739 1.48867 1.15824 1.84660 1.20058 1.04700 0.96581 0.89086 1.21546 0.91970 0.97627 0.97026 1.21426 1.00602 1.06571 1.00878 1.22562 0.86838 0.98987 1.01004 1.46379 1.09219 1.36047 1.27046 0.71860 1.77382 1.22527 1.08200 1.00583 0.91677 0.92279 0.92528 0.90327 0.91338 0.92055 0.92055 0.92111 0.92121 0.96592 0.96599 0.78352 0.93563 0.76518 0.87252 0.86679 0.83346 0.80727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.48 37.16 0.35 -1.18 16 2 C 0.14 1.44 2.57 -67.93 -0.17 1.27 16 3 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 4 C -0.13 -1.26 4.75 -26.73 -0.13 -1.38 16 5 C -0.11 -1.40 5.10 -26.73 -0.14 -1.54 16 6 C -0.13 -2.00 5.33 -26.73 -0.14 -2.14 16 7 C 0.15 3.14 6.26 -4.04 -0.03 3.12 16 8 N -0.74 -19.28 5.60 -59.91 -0.34 -19.62 16 9 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 10 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 12 N -0.93 -28.78 13.06 55.49 0.72 -28.06 16 13 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 17 N -0.72 -6.62 4.53 -53.81 -0.24 -6.86 16 18 C 0.52 5.79 7.78 -10.98 -0.09 5.70 16 19 O -0.53 -8.25 15.22 5.56 0.08 -8.16 16 20 C -0.06 -0.52 6.28 -29.04 -0.18 -0.70 16 21 C 0.09 0.93 6.02 -82.41 -0.50 0.43 16 22 C -0.27 -2.34 10.72 -40.01 -0.43 -2.77 16 23 C 0.05 0.38 11.99 -17.22 -0.21 0.18 16 24 N -0.48 -4.10 7.36 30.45 0.22 -3.87 16 25 H 0.44 2.31 8.96 -182.60 -1.64 0.67 16 26 N -0.26 -3.23 12.05 33.67 0.41 -2.82 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.48 8.14 -51.94 -0.42 0.05 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.38 10.47 7.67 -40.82 -0.31 10.15 16 39 H 0.25 7.54 8.31 -40.82 -0.34 7.21 16 40 H 0.40 2.66 8.60 -40.82 -0.35 2.30 16 41 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.12 0.66 8.12 -51.93 -0.42 0.24 16 43 H 0.15 1.00 8.06 -52.48 -0.42 0.57 16 44 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -37.53 370.98 -9.03 -46.57 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -8.56 Total: 6.13 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.90 Total: -6.62 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: 0.77 Total: -61.23 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.08 Total: -8.16 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.53 -9.03 -46.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169936967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.875 kcal (2) G-P(sol) polarization free energy of solvation -37.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds