Wall clock time and date at job start Tue Mar 31 2020 03:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47759 * 2 1 4 4 C 1.53003 * 109.46782 * 119.99813 * 2 1 3 5 5 C 1.53001 * 109.47103 * 184.99647 * 4 2 1 6 6 C 1.53001 * 109.47454 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47209 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.46947 * 179.97438 * 7 6 5 9 9 C 1.36938 * 119.99873 * 179.97438 * 8 7 6 10 10 H 1.07991 * 119.99878 * 359.97438 * 9 8 7 11 11 C 1.38815 * 119.99772 * 179.97438 * 9 8 7 12 12 N 1.31615 * 119.99941 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99963 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47202 * 90.00169 * 13 11 9 15 15 H 1.48498 * 109.47341 * 210.00341 * 13 11 9 16 16 H 1.48503 * 109.47077 * 330.00176 * 13 11 9 17 17 N 1.46497 * 109.47259 * 239.99408 * 2 1 3 18 18 C 1.34787 * 119.99650 * 85.00342 * 17 2 1 19 19 O 1.21275 * 119.99611 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99828 * 180.02562 * 18 17 2 21 21 C 1.50698 * 109.47030 * 179.97438 * 20 18 17 22 22 C 1.39870 * 125.89873 * 124.99889 * 21 20 18 23 23 C 1.35318 * 107.92236 * 179.76106 * 22 21 20 24 24 N 1.34948 * 107.74290 * 0.42279 * 23 22 21 25 25 H 0.97001 * 126.03958 * 179.84649 * 24 23 22 26 26 N 1.30835 * 125.89830 * 305.02686 * 21 20 18 27 27 H 1.09002 * 109.47113 * 300.00257 * 1 2 3 28 28 H 1.09004 * 109.46866 * 59.99730 * 1 2 3 29 29 H 1.08988 * 109.47388 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47464 * 304.99614 * 4 2 1 31 31 H 1.09001 * 109.47387 * 64.99972 * 4 2 1 32 32 H 1.08998 * 109.47569 * 300.00701 * 5 4 2 33 33 H 1.09001 * 109.46734 * 59.99925 * 5 4 2 34 34 H 1.09006 * 109.46725 * 300.00443 * 6 5 4 35 35 H 1.08996 * 109.46849 * 59.99987 * 6 5 4 36 36 H 1.08999 * 109.46926 * 299.99413 * 7 6 5 37 37 H 1.08996 * 109.47629 * 59.99971 * 7 6 5 38 38 H 0.97008 * 120.00146 * 359.97438 * 8 7 6 39 39 H 0.97001 * 119.99992 * 179.97438 * 12 11 9 40 40 H 0.97003 * 120.00382 * 265.00692 * 17 2 1 41 41 H 1.09002 * 109.47553 * 59.99600 * 20 18 17 42 42 H 1.09004 * 109.47119 * 300.00033 * 20 18 17 43 43 H 1.08008 * 126.03860 * 0.02562 * 22 21 20 44 44 H 1.07999 * 126.12849 * 180.26834 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6134 1.3138 6 6 4.0748 -1.3351 2.5627 7 6 5.5996 -1.2267 2.6275 8 7 6.0879 -1.9173 3.8237 9 6 7.4299 -1.9537 4.0934 10 1 8.1284 -1.4737 3.4240 11 6 7.8925 -2.6076 5.2271 12 7 7.0413 -3.1930 6.0425 13 14 9.7232 -2.6567 5.5954 14 1 10.0928 -1.4820 6.4252 15 1 10.0466 -3.9047 6.3323 16 1 10.4855 -2.6225 4.3214 17 7 2.0184 -0.6907 -1.1961 18 6 2.1471 -0.0183 -2.3571 19 8 1.8592 1.1585 -2.4114 20 6 2.6489 -0.7290 -3.5877 21 6 2.6992 0.2392 -4.7414 22 6 3.8203 0.5176 -5.5301 23 6 3.4587 1.4322 -6.4596 24 7 2.1575 1.7291 -6.2600 25 1 1.6298 2.3576 -6.7771 26 7 1.7019 0.9649 -5.1779 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0275 0.0005 30 1 1.6054 -0.2617 2.1370 31 1 1.7516 -1.7715 1.2057 32 1 3.9994 -1.0728 0.4261 33 1 3.8531 0.4369 1.3574 34 1 3.6401 -0.8759 3.4506 35 1 3.7864 -2.3853 2.5186 36 1 6.0345 -1.6857 1.7396 37 1 5.8877 -0.1764 2.6717 38 1 5.4605 -2.3488 4.4248 39 1 7.3645 -3.6503 6.8346 40 1 2.2490 -1.6319 -1.1525 41 1 1.9761 -1.5508 -3.8325 42 1 3.6481 -1.1216 -3.3985 43 1 4.8002 0.0770 -5.4198 44 1 4.0977 1.8513 -7.2228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169936967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:29 Heat of formation + Delta-G solvation = -1.996658 kcal Electronic energy + Delta-G solvation = -22525.632937 eV Core-core repulsion = 19091.945757 eV Total energy + Delta-G solvation = -3433.687181 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.07166 -40.63931 -38.00431 -36.78437 -34.73021 -33.97146 -32.87776 -31.67312 -30.80097 -29.21884 -28.78393 -25.91870 -23.89817 -22.87875 -22.09127 -21.95273 -21.45314 -20.44436 -19.10949 -18.97420 -18.00702 -17.20094 -16.67324 -16.32562 -16.17962 -15.52729 -15.35751 -15.26509 -14.98961 -14.59468 -14.39504 -14.35186 -14.14386 -13.99616 -13.68221 -13.21257 -12.97541 -12.91255 -12.87536 -12.82485 -12.43102 -12.23833 -12.13773 -11.86486 -11.77927 -11.55332 -11.45649 -11.36320 -10.92570 -10.84412 -10.31358 -9.97827 -9.58939 -9.00140 -7.95410 -5.24594 1.05204 1.47593 1.49882 1.58425 1.75418 1.80364 2.09505 2.44663 2.56488 3.37871 3.62515 3.67736 3.96188 4.07922 4.08826 4.13764 4.21999 4.38006 4.40197 4.45284 4.58048 4.63581 4.67524 4.80774 4.84243 4.90285 4.90748 4.96316 5.01946 5.05142 5.13238 5.18175 5.29289 5.34362 5.47737 5.49051 5.56118 5.67468 5.73032 6.27608 6.53114 6.68451 6.80414 7.33135 7.39861 8.10229 8.33448 9.28254 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.002333 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.992398 B =11997.300711 C =13245.784425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.146 3.854 3 H 0.061 0.939 4 C -0.115 4.115 5 C -0.104 4.104 6 C -0.112 4.112 7 C 0.148 3.852 8 N -0.750 5.750 9 C -0.249 4.249 10 H 0.074 0.926 11 C -0.078 4.078 12 N -0.970 5.970 13 Si 0.976 3.024 14 H -0.287 1.287 15 H -0.293 1.293 16 H -0.269 1.269 17 N -0.713 5.713 18 C 0.513 3.487 19 O -0.577 6.577 20 C -0.059 4.059 21 C 0.068 3.932 22 C -0.289 4.289 23 C 0.065 3.935 24 N -0.479 5.479 25 H 0.448 0.552 26 N -0.318 5.318 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.021 0.979 37 H 0.011 0.989 38 H 0.374 0.626 39 H 0.252 0.748 40 H 0.416 0.584 41 H 0.132 0.868 42 H 0.143 0.857 43 H 0.167 0.833 44 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.515 5.292 -25.869 29.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.079 0.921 4 C -0.153 4.153 5 C -0.142 4.142 6 C -0.150 4.150 7 C 0.022 3.978 8 N -0.392 5.392 9 C -0.381 4.381 10 H 0.092 0.908 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.805 3.195 14 H -0.214 1.214 15 H -0.219 1.219 16 H -0.193 1.193 17 N -0.366 5.366 18 C 0.299 3.701 19 O -0.456 6.456 20 C -0.100 4.100 21 C -0.099 4.099 22 C -0.318 4.318 23 C -0.083 4.083 24 N -0.189 5.189 25 H 0.294 0.706 26 N -0.142 5.142 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.029 0.971 38 H 0.206 0.794 39 H 0.061 0.939 40 H 0.253 0.747 41 H 0.149 0.851 42 H 0.161 0.839 43 H 0.184 0.816 44 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -13.755 6.470 -25.799 29.944 hybrid contribution 1.398 -0.273 0.402 1.480 sum -12.357 6.198 -25.397 28.915 Atomic orbital electron populations 1.22103 0.94804 1.02780 1.01784 1.20876 0.94128 0.96545 0.84347 0.92053 1.21829 0.94802 1.02015 0.96667 1.21419 0.95715 0.99998 0.97097 1.21601 0.93738 1.01006 0.98680 1.20864 0.94252 0.94198 0.88527 1.42651 1.04541 1.65382 1.26675 1.19660 0.85342 1.27654 1.05396 0.90816 1.25627 1.02323 1.01257 0.97849 1.69817 1.34711 1.41953 1.15576 0.85099 0.79805 0.76681 0.77938 1.21409 1.21915 1.19331 1.46002 1.67035 1.14719 1.08885 1.20880 0.76911 0.86995 0.85294 1.90716 1.51236 1.18171 1.85497 1.20193 1.06583 0.96332 0.86929 1.22037 0.92400 0.97777 0.97698 1.21805 1.01050 1.07598 1.01368 1.23252 0.86407 0.97706 1.00923 1.46452 1.10038 1.35914 1.26472 0.70649 1.77292 1.24318 1.10029 1.02556 0.90877 0.94364 0.90970 0.89953 0.89536 0.91070 0.92965 0.92695 0.91685 0.96118 0.97073 0.79431 0.93920 0.74727 0.85065 0.83944 0.81583 0.76668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.48 71.98 0.68 -2.11 16 2 C 0.15 2.80 2.57 44.99 0.12 2.92 16 3 H 0.06 1.53 7.58 -2.39 -0.02 1.51 16 4 C -0.12 -2.04 4.75 30.60 0.15 -1.90 16 5 C -0.10 -2.39 5.10 30.59 0.16 -2.23 16 6 C -0.11 -3.42 5.33 30.59 0.16 -3.26 16 7 C 0.15 5.99 6.26 86.38 0.54 6.53 16 8 N -0.75 -39.27 5.60 -343.46 -1.92 -41.19 16 9 C -0.25 -14.27 9.99 84.03 0.84 -13.43 16 10 H 0.07 4.07 7.83 -2.92 -0.02 4.05 16 11 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 12 N -0.97 -60.06 13.06 21.65 0.28 -59.77 16 13 Si 0.98 46.54 29.55 68.60 2.03 48.57 16 14 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 15 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 N -0.71 -12.00 4.53 -442.53 -2.00 -14.01 16 18 C 0.51 11.24 7.78 87.65 0.68 11.92 16 19 O -0.58 -18.62 15.22 -3.01 -0.05 -18.67 16 20 C -0.06 -0.90 6.28 29.10 0.18 -0.71 16 21 C 0.07 1.43 6.02 43.10 0.26 1.69 16 22 C -0.29 -4.69 10.72 21.99 0.24 -4.46 16 23 C 0.06 0.82 11.99 83.54 1.00 1.82 16 24 N -0.48 -7.96 7.36 -57.59 -0.42 -8.38 16 25 H 0.45 4.59 8.96 -213.33 -1.91 2.68 16 26 N -0.32 -7.87 12.05 -47.39 -0.57 -8.44 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.50 7.75 -2.39 -0.02 1.48 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.37 20.59 7.67 -92.70 -0.71 19.88 16 39 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.42 4.44 8.60 -92.71 -0.80 3.65 16 41 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.14 1.29 8.12 -2.38 -0.02 1.27 16 43 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 44 H 0.22 0.67 8.06 -2.91 -0.02 0.64 16 Total: -1.00 -82.44 370.98 0.40 -82.03 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: -2.41 Total: 27.22 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 5.47 Total: -7.35 kcal Atomic # 7 Polarization: -127.16 SS G_CDS: -4.64 Total: -131.80 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.05 Total: -18.67 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -82.44 0.40 -82.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169936967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.038 kcal (2) G-P(sol) polarization free energy of solvation -82.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds