Wall clock time and date at job start Tue Mar 31 2020 03:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35621 * 116.99705 * 2 1 4 4 C 1.39151 * 120.50357 * 359.97438 * 3 2 1 5 5 C 1.38314 * 118.62948 * 179.76629 * 4 3 2 6 6 C 1.39942 * 119.59190 * 0.47804 * 5 4 3 7 7 N 1.38904 * 119.49564 * 179.78823 * 6 5 4 8 8 C 1.46496 * 119.99756 * 359.72547 * 7 6 5 9 9 C 1.53006 * 109.46995 * 180.02562 * 8 7 6 10 10 N 1.46898 * 109.47006 * 179.97438 * 9 8 7 11 11 C 1.46891 * 111.00513 * 293.95181 * 10 9 8 12 12 C 1.46900 * 110.99814 * 169.99400 * 10 9 8 13 13 C 1.53005 * 109.47358 * 190.00032 * 12 10 9 14 14 N 1.46897 * 109.47152 * 180.02562 * 13 12 10 15 15 N 1.31871 * 121.00759 * 359.50741 * 6 5 4 16 16 C 1.33821 * 121.47323 * 0.26225 * 15 6 5 17 17 C 1.40915 * 119.84818 * 179.97438 * 16 15 6 18 18 H 1.08006 * 119.99743 * 179.97438 * 17 16 15 19 19 C 1.40023 * 120.00014 * 0.02562 * 17 16 15 20 20 N 1.30781 * 119.99972 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99926 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47063 * 89.99360 * 21 19 17 23 23 H 1.48497 * 109.46854 * 209.99361 * 21 19 17 24 24 H 1.48500 * 109.46801 * 329.99525 * 21 19 17 25 25 H 1.08996 * 109.47485 * 60.00239 * 1 2 3 26 26 H 1.09001 * 109.46824 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47386 * 299.99180 * 1 2 3 28 28 H 1.07998 * 120.68661 * 0.02562 * 4 3 2 29 29 H 1.07993 * 120.20490 * 180.24613 * 5 4 3 30 30 H 0.96998 * 120.00052 * 179.72869 * 7 6 5 31 31 H 1.09001 * 109.47464 * 60.00488 * 8 7 6 32 32 H 1.09001 * 109.47459 * 300.00203 * 8 7 6 33 33 H 1.09001 * 109.47002 * 299.99701 * 9 8 7 34 34 H 1.08993 * 109.46955 * 60.00138 * 9 8 7 35 35 H 1.09008 * 109.47294 * 59.99701 * 11 10 9 36 36 H 1.08994 * 109.47718 * 180.02562 * 11 10 9 37 37 H 1.09007 * 109.47181 * 300.00759 * 11 10 9 38 38 H 1.08997 * 109.47821 * 310.00192 * 12 10 9 39 39 H 1.09003 * 109.46887 * 70.00179 * 12 10 9 40 40 H 1.09007 * 109.46790 * 300.00654 * 13 12 10 41 41 H 1.08996 * 109.46630 * 60.00207 * 13 12 10 42 42 H 1.00900 * 110.99522 * 180.02562 * 14 13 12 43 43 H 1.00900 * 110.99707 * 303.95244 * 14 13 12 44 44 H 0.96995 * 119.99638 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2970 2.3820 -0.0005 5 6 1.9648 3.5932 0.0044 6 6 3.3641 3.6109 -0.0003 7 7 4.0327 4.8284 0.0002 8 6 3.2732 6.0811 -0.0003 9 6 4.2424 7.2651 -0.0002 10 7 3.4808 8.5212 -0.0014 11 6 2.7327 8.6822 -1.2553 12 6 4.3626 9.6717 0.2370 13 6 3.5151 10.9229 0.4767 14 7 4.3970 12.0734 0.7144 15 7 4.0577 2.4893 0.0003 16 6 3.4544 1.2948 0.0001 17 6 4.2292 0.1177 0.0002 18 1 3.7447 -0.8476 0.0005 19 6 5.6270 0.1997 0.0009 20 7 6.2135 1.3686 0.0011 21 14 6.6541 -1.3607 0.0003 22 1 6.9268 -1.7732 -1.3999 23 1 7.9387 -1.1079 0.7010 24 1 5.9131 -2.4412 0.6993 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 0.2176 2.3479 -0.0005 29 1 1.4098 4.5196 0.0082 30 1 5.0025 4.8492 0.0009 31 1 2.6448 6.1255 0.8892 32 1 2.6461 6.1254 -0.8908 33 1 4.8697 7.2210 0.8901 34 1 4.8704 7.2206 -0.8899 35 1 2.0367 7.8514 -1.3724 36 1 2.1782 9.6203 -1.2298 37 1 3.4283 8.6944 -2.0944 38 1 4.9822 9.4794 1.1128 39 1 5.0010 9.8265 -0.6329 40 1 2.8954 11.1152 -0.3992 41 1 2.8768 10.7680 1.3465 42 1 3.8607 12.9127 0.8760 43 1 5.0268 11.8937 1.4820 44 1 7.1818 1.4253 0.0012 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170499898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:33 Heat of formation + Delta-G solvation = 14.794352 kcal Electronic energy + Delta-G solvation = -23260.598436 eV Core-core repulsion = 19827.639369 eV Total energy + Delta-G solvation = -3432.959068 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.83886 -38.28200 -36.85058 -35.18120 -34.13353 -33.05373 -30.25510 -29.83807 -28.15497 -27.64610 -26.37701 -25.20336 -24.67199 -22.07319 -21.31427 -20.73659 -20.26043 -17.42776 -16.59855 -16.52026 -16.36932 -16.04431 -15.51815 -14.86969 -14.80309 -14.66653 -14.56100 -14.20720 -13.74796 -13.49245 -13.26292 -12.94337 -12.58065 -12.35449 -12.29853 -12.18063 -11.83775 -11.54330 -11.40536 -11.20370 -11.15794 -11.06518 -10.92277 -10.51794 -10.41016 -10.30701 -9.75667 -9.40718 -9.06043 -8.49322 -8.38921 -7.96008 -7.62779 -6.33982 -6.23520 -4.31580 2.86517 3.14454 3.17235 3.19356 3.31474 3.48582 4.02348 4.32552 4.54836 4.65923 4.73305 4.85572 4.92924 5.03961 5.19654 5.31876 5.39728 5.43883 5.63091 5.65553 5.72208 5.83570 5.84233 5.86937 6.00237 6.01971 6.13090 6.16051 6.23969 6.45428 6.68729 6.73645 6.84785 6.89143 6.93778 7.07026 7.24778 7.35834 7.54664 7.74473 8.25335 8.32987 8.48878 8.73381 8.84271 9.22352 10.22429 10.39540 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.017256 B = 0.003236 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.204880 B = 8650.562388 C =10108.335960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C -0.077 4.077 4 C -0.114 4.114 5 C -0.345 4.345 6 C 0.395 3.605 7 N -0.740 5.740 8 C 0.148 3.852 9 C 0.047 3.953 10 N -0.539 5.539 11 C 0.017 3.983 12 C 0.056 3.944 13 C 0.063 3.937 14 N -0.853 5.853 15 N -0.514 5.514 16 C 0.289 3.711 17 C -0.413 4.413 18 H 0.091 0.909 19 C 0.068 3.932 20 N -0.715 5.715 21 Si 0.908 3.092 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.261 1.261 25 H 0.036 0.964 26 H 0.079 0.921 27 H 0.036 0.964 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.394 0.606 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.027 0.973 38 H 0.072 0.928 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.343 0.657 43 H 0.341 0.659 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.654 13.442 0.482 13.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.226 6.226 3 C -0.125 4.125 4 C -0.138 4.138 5 C -0.371 4.371 6 C 0.157 3.843 7 N -0.378 5.378 8 C 0.022 3.978 9 C -0.081 4.081 10 N -0.264 5.264 11 C -0.131 4.131 12 C -0.072 4.072 13 C -0.068 4.068 14 N -0.383 5.383 15 N -0.237 5.237 16 C 0.161 3.839 17 C -0.445 4.445 18 H 0.109 0.891 19 C -0.157 4.157 20 N -0.337 5.337 21 Si 0.732 3.268 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.185 1.185 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.229 0.771 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.055 0.945 42 H 0.156 0.844 43 H 0.153 0.847 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.726 13.341 0.125 13.618 hybrid contribution -0.345 -0.261 0.261 0.505 sum -3.071 13.080 0.385 13.442 Atomic orbital electron populations 1.22679 0.82249 1.01461 0.99637 1.85918 1.17793 1.27917 1.90927 1.20030 0.93436 0.83097 1.15919 1.20671 0.97253 0.92375 1.03548 1.20358 0.92830 0.96337 1.27614 1.18433 0.87688 0.86565 0.91602 1.43942 1.07798 1.01523 1.84499 1.20924 0.93660 0.82271 1.00989 1.22246 0.95543 0.88758 1.01530 1.61792 1.27661 1.01691 1.35212 1.22536 0.98336 1.02726 0.89524 1.22038 0.94320 0.89658 1.01191 1.21771 0.94466 0.89745 1.00848 1.58664 1.23751 1.05555 1.50367 1.68371 1.34766 0.94970 1.25554 1.17762 0.85010 0.91038 0.90114 1.19528 0.90516 0.93118 1.41382 0.89125 1.26080 0.98768 0.97110 0.93760 1.70172 1.10125 1.24448 1.28923 0.86326 0.79050 0.82288 0.79145 1.19506 1.20298 1.18477 0.94531 0.90218 0.94508 0.88299 0.88975 0.77126 0.92350 0.93220 0.90255 0.94143 0.90636 0.91356 0.95398 0.90918 0.93955 0.90933 0.94483 0.84438 0.84731 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.83 101.05 0.99 1.63 16 2 O -0.31 -7.43 9.61 -18.56 -0.18 -7.61 16 3 C -0.08 -2.01 6.74 -38.10 -0.26 -2.26 16 4 C -0.11 -2.69 9.12 -39.21 -0.36 -3.05 16 5 C -0.34 -8.11 9.33 -38.92 -0.36 -8.47 16 6 C 0.39 9.76 7.65 -155.26 -1.19 8.57 16 7 N -0.74 -14.96 5.72 -60.35 -0.35 -15.31 16 8 C 0.15 2.37 4.81 -4.04 -0.02 2.35 16 9 C 0.05 0.62 5.07 -3.82 -0.02 0.60 16 10 N -0.54 -6.21 4.76 -242.92 -1.16 -7.37 16 11 C 0.02 0.18 9.13 60.06 0.55 0.73 16 12 C 0.06 0.57 5.22 -3.82 -0.02 0.55 16 13 C 0.06 0.54 6.72 -3.82 -0.03 0.52 16 14 N -0.85 -6.39 9.62 -10.37 -0.10 -6.49 16 15 N -0.51 -14.32 7.88 -10.20 -0.08 -14.40 16 16 C 0.29 8.22 6.56 -84.85 -0.56 7.66 16 17 C -0.41 -11.48 8.94 -37.90 -0.34 -11.82 16 18 H 0.09 2.45 7.31 -52.48 -0.38 2.07 16 19 C 0.07 1.76 5.50 -17.33 -0.10 1.66 16 20 N -0.71 -19.03 11.45 55.55 0.64 -18.39 16 21 Si 0.91 19.08 29.56 -169.99 -5.03 14.06 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 24 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 25 H 0.04 0.60 7.69 -51.93 -0.40 0.21 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 28 H 0.10 2.03 6.43 -52.49 -0.34 1.69 16 29 H 0.09 1.94 6.67 -52.49 -0.35 1.59 16 30 H 0.39 7.89 8.59 -40.82 -0.35 7.54 16 31 H 0.06 0.98 7.91 -51.93 -0.41 0.57 16 32 H 0.05 0.80 6.33 -51.93 -0.33 0.47 16 33 H 0.08 1.02 7.93 -51.93 -0.41 0.60 16 34 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 35 H 0.07 0.83 6.47 -51.92 -0.34 0.50 16 36 H 0.07 0.62 6.30 -51.93 -0.33 0.29 16 37 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.71 7.93 -51.93 -0.41 0.30 16 39 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 40 H 0.07 0.63 6.47 -51.93 -0.34 0.29 16 41 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.34 1.98 9.08 -39.29 -0.36 1.62 16 43 H 0.34 2.20 8.99 -39.29 -0.35 1.84 16 44 H 0.27 6.50 8.29 -40.82 -0.34 6.17 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -31.05 355.28 -9.33 -40.38 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -6.74 Total: 11.11 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.70 Total: -1.34 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -1.05 Total: -61.95 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.18 Total: -7.61 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.05 -9.33 -40.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170499898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.174 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds