Wall clock time and date at job start Tue Mar 31 2020 03:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35621 * 116.99705 * 2 1 4 4 C 1.39151 * 120.50357 * 359.97438 * 3 2 1 5 5 C 1.38314 * 118.62948 * 179.76629 * 4 3 2 6 6 C 1.39942 * 119.59190 * 0.47804 * 5 4 3 7 7 N 1.38904 * 119.49564 * 179.78823 * 6 5 4 8 8 C 1.46496 * 119.99756 * 359.72547 * 7 6 5 9 9 C 1.53006 * 109.46995 * 180.02562 * 8 7 6 10 10 N 1.46898 * 109.47006 * 179.97438 * 9 8 7 11 11 C 1.46891 * 111.00513 * 293.95181 * 10 9 8 12 12 C 1.46900 * 110.99814 * 169.99400 * 10 9 8 13 13 C 1.53005 * 109.47358 * 190.00032 * 12 10 9 14 14 N 1.46897 * 109.47152 * 180.02562 * 13 12 10 15 15 N 1.31871 * 121.00759 * 359.50741 * 6 5 4 16 16 C 1.33821 * 121.47323 * 0.26225 * 15 6 5 17 17 C 1.40915 * 119.84818 * 179.97438 * 16 15 6 18 18 H 1.08006 * 119.99743 * 179.97438 * 17 16 15 19 19 C 1.40023 * 120.00014 * 0.02562 * 17 16 15 20 20 N 1.30781 * 119.99972 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99926 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47063 * 89.99360 * 21 19 17 23 23 H 1.48497 * 109.46854 * 209.99361 * 21 19 17 24 24 H 1.48500 * 109.46801 * 329.99525 * 21 19 17 25 25 H 1.08996 * 109.47485 * 60.00239 * 1 2 3 26 26 H 1.09001 * 109.46824 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47386 * 299.99180 * 1 2 3 28 28 H 1.07998 * 120.68661 * 0.02562 * 4 3 2 29 29 H 1.07993 * 120.20490 * 180.24613 * 5 4 3 30 30 H 0.96998 * 120.00052 * 179.72869 * 7 6 5 31 31 H 1.09001 * 109.47464 * 60.00488 * 8 7 6 32 32 H 1.09001 * 109.47459 * 300.00203 * 8 7 6 33 33 H 1.09001 * 109.47002 * 299.99701 * 9 8 7 34 34 H 1.08993 * 109.46955 * 60.00138 * 9 8 7 35 35 H 1.09008 * 109.47294 * 59.99701 * 11 10 9 36 36 H 1.08994 * 109.47718 * 180.02562 * 11 10 9 37 37 H 1.09007 * 109.47181 * 300.00759 * 11 10 9 38 38 H 1.08997 * 109.47821 * 310.00192 * 12 10 9 39 39 H 1.09003 * 109.46887 * 70.00179 * 12 10 9 40 40 H 1.09007 * 109.46790 * 300.00654 * 13 12 10 41 41 H 1.08996 * 109.46630 * 60.00207 * 13 12 10 42 42 H 1.00900 * 110.99522 * 180.02562 * 14 13 12 43 43 H 1.00900 * 110.99707 * 303.95244 * 14 13 12 44 44 H 0.96995 * 119.99638 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2970 2.3820 -0.0005 5 6 1.9648 3.5932 0.0044 6 6 3.3641 3.6109 -0.0003 7 7 4.0327 4.8284 0.0002 8 6 3.2732 6.0811 -0.0003 9 6 4.2424 7.2651 -0.0002 10 7 3.4808 8.5212 -0.0014 11 6 2.7327 8.6822 -1.2553 12 6 4.3626 9.6717 0.2370 13 6 3.5151 10.9229 0.4767 14 7 4.3970 12.0734 0.7144 15 7 4.0577 2.4893 0.0003 16 6 3.4544 1.2948 0.0001 17 6 4.2292 0.1177 0.0002 18 1 3.7447 -0.8476 0.0005 19 6 5.6270 0.1997 0.0009 20 7 6.2135 1.3686 0.0011 21 14 6.6541 -1.3607 0.0003 22 1 6.9268 -1.7732 -1.3999 23 1 7.9387 -1.1079 0.7010 24 1 5.9131 -2.4412 0.6993 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 0.2176 2.3479 -0.0005 29 1 1.4098 4.5196 0.0082 30 1 5.0025 4.8492 0.0009 31 1 2.6448 6.1255 0.8892 32 1 2.6461 6.1254 -0.8908 33 1 4.8697 7.2210 0.8901 34 1 4.8704 7.2206 -0.8899 35 1 2.0367 7.8514 -1.3724 36 1 2.1782 9.6203 -1.2298 37 1 3.4283 8.6944 -2.0944 38 1 4.9822 9.4794 1.1128 39 1 5.0010 9.8265 -0.6329 40 1 2.8954 11.1152 -0.3992 41 1 2.8768 10.7680 1.3465 42 1 3.8607 12.9127 0.8760 43 1 5.0268 11.8937 1.4820 44 1 7.1818 1.4253 0.0012 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170499898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:32 Heat of formation + Delta-G solvation = -9.242999 kcal Electronic energy + Delta-G solvation = -23261.640774 eV Core-core repulsion = 19827.639369 eV Total energy + Delta-G solvation = -3434.001405 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.63346 -39.34689 -38.49309 -36.55809 -35.40717 -34.62988 -32.16266 -31.34904 -29.43053 -28.63807 -27.98973 -26.82274 -25.94758 -23.59255 -22.67287 -21.98960 -21.75311 -19.31541 -18.31154 -18.13279 -17.41855 -16.93301 -16.72944 -16.55720 -16.22202 -16.07947 -15.80039 -15.54438 -14.91339 -14.73875 -14.59520 -14.34599 -14.06630 -13.86968 -13.79400 -13.25885 -13.05296 -12.94902 -12.88293 -12.81148 -12.51551 -12.45524 -12.18520 -12.04674 -11.86134 -11.77671 -11.55821 -11.24390 -10.11558 -9.89080 -9.66368 -9.57101 -9.41063 -8.24806 -8.06924 -6.31434 1.00313 1.28303 1.42645 1.55586 1.59189 2.27326 2.35354 2.92355 2.97713 3.17112 3.79151 3.90580 3.96633 3.98599 4.11814 4.21268 4.28085 4.43150 4.47540 4.51292 4.53158 4.58263 4.62001 4.65481 4.76725 4.78647 4.88783 4.93799 4.94337 4.99346 5.01001 5.11317 5.34214 5.52198 5.72640 5.85600 5.94975 5.96108 6.22574 6.28031 6.42927 6.56994 6.74298 6.84903 7.01512 7.34811 8.30223 8.50259 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.017256 B = 0.003236 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.204880 B = 8650.562388 C =10108.335960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.337 6.337 3 C -0.098 4.098 4 C -0.112 4.112 5 C -0.343 4.343 6 C 0.376 3.624 7 N -0.735 5.735 8 C 0.152 3.848 9 C 0.059 3.941 10 N -0.543 5.543 11 C 0.016 3.984 12 C 0.058 3.942 13 C 0.070 3.930 14 N -0.859 5.859 15 N -0.544 5.544 16 C 0.252 3.748 17 C -0.450 4.450 18 H 0.084 0.916 19 C 0.025 3.975 20 N -0.748 5.748 21 Si 0.985 3.015 22 H -0.263 1.263 23 H -0.266 1.266 24 H -0.260 1.260 25 H 0.047 0.953 26 H 0.111 0.889 27 H 0.047 0.953 28 H 0.132 0.868 29 H 0.118 0.882 30 H 0.393 0.607 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.026 0.974 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.073 0.927 41 H 0.035 0.965 42 H 0.354 0.646 43 H 0.347 0.653 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.282 14.305 0.535 14.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.252 6.252 3 C -0.146 4.146 4 C -0.137 4.137 5 C -0.369 4.369 6 C 0.137 3.863 7 N -0.371 5.371 8 C 0.027 3.973 9 C -0.070 4.070 10 N -0.267 5.267 11 C -0.132 4.132 12 C -0.070 4.070 13 C -0.061 4.061 14 N -0.390 5.390 15 N -0.267 5.267 16 C 0.123 3.877 17 C -0.483 4.483 18 H 0.102 0.898 19 C -0.197 4.197 20 N -0.371 5.371 21 Si 0.806 3.194 22 H -0.188 1.188 23 H -0.190 1.190 24 H -0.183 1.183 25 H 0.066 0.934 26 H 0.129 0.871 27 H 0.066 0.934 28 H 0.150 0.850 29 H 0.136 0.864 30 H 0.227 0.773 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.045 0.955 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.168 0.832 43 H 0.159 0.841 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.381 14.264 0.181 14.660 hybrid contribution -0.297 -0.399 0.243 0.554 sum -3.678 13.865 0.423 14.350 Atomic orbital electron populations 1.23026 0.79123 1.04010 1.00568 1.85854 1.21043 1.27238 1.91023 1.20078 0.93228 0.84573 1.16720 1.21038 0.98897 0.91614 1.02138 1.20700 0.92636 0.97471 1.26114 1.18853 0.88696 0.87202 0.91538 1.44085 1.07970 1.01549 1.83527 1.21028 0.93996 0.81528 1.00755 1.22057 0.94791 0.88504 1.01616 1.61795 1.27723 1.01427 1.35799 1.22574 0.98185 1.03403 0.89011 1.22057 0.94300 0.89636 1.00981 1.21654 0.94244 0.89436 1.00805 1.58646 1.23873 1.05632 1.50881 1.68315 1.36102 0.95747 1.26550 1.18215 0.86776 0.91640 0.91047 1.19730 0.91923 0.92936 1.43674 0.89803 1.26935 0.99260 1.00716 0.92799 1.70246 1.10792 1.26577 1.29452 0.85169 0.77282 0.77605 0.79375 1.18808 1.18992 1.18337 0.93437 0.87057 0.93448 0.85029 0.86411 0.77272 0.92719 0.92980 0.90016 0.94287 0.91249 0.89625 0.95529 0.90707 0.94565 0.90846 0.94648 0.83247 0.84055 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.83 113.37 1.11 2.06 16 2 O -0.34 -16.13 9.61 -89.33 -0.86 -16.99 16 3 C -0.10 -5.17 6.74 23.23 0.16 -5.02 16 4 C -0.11 -5.22 9.12 22.51 0.21 -5.01 16 5 C -0.34 -15.85 9.33 22.70 0.21 -15.63 16 6 C 0.38 18.75 7.65 133.45 1.02 19.77 16 7 N -0.73 -29.78 5.72 -344.84 -1.97 -31.75 16 8 C 0.15 4.73 4.81 86.38 0.42 5.14 16 9 C 0.06 1.47 5.07 86.31 0.44 1.91 16 10 N -0.54 -11.67 4.76 -922.46 -4.39 -16.06 16 11 C 0.02 0.31 9.13 127.69 1.17 1.48 16 12 C 0.06 1.08 5.22 86.30 0.45 1.53 16 13 C 0.07 1.07 6.72 86.31 0.58 1.65 16 14 N -0.86 -11.27 9.62 -186.71 -1.80 -13.07 16 15 N -0.54 -31.19 7.88 -186.17 -1.47 -32.66 16 16 C 0.25 14.80 6.56 40.23 0.26 15.07 16 17 C -0.45 -25.98 8.94 23.36 0.21 -25.77 16 18 H 0.08 4.74 7.31 -2.91 -0.02 4.71 16 19 C 0.02 1.30 5.50 85.28 0.47 1.77 16 20 N -0.75 -40.90 11.45 21.84 0.25 -40.65 16 21 Si 0.99 39.81 29.56 68.60 2.03 41.84 16 22 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 23 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 24 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 25 H 0.05 1.47 7.69 -2.39 -0.02 1.45 16 26 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 27 H 0.05 1.47 7.69 -2.39 -0.02 1.45 16 28 H 0.13 5.09 6.43 -2.91 -0.02 5.07 16 29 H 0.12 4.73 6.67 -2.91 -0.02 4.71 16 30 H 0.39 15.97 8.59 -92.71 -0.80 15.17 16 31 H 0.05 1.76 7.91 -2.39 -0.02 1.75 16 32 H 0.05 1.62 6.33 -2.39 -0.02 1.60 16 33 H 0.08 2.01 7.93 -2.39 -0.02 1.99 16 34 H 0.04 0.99 8.12 -2.39 -0.02 0.97 16 35 H 0.07 1.43 6.47 -2.38 -0.02 1.41 16 36 H 0.09 1.36 6.30 -2.39 -0.02 1.35 16 37 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.07 1.35 7.93 -2.39 -0.02 1.33 16 39 H 0.04 0.72 8.12 -2.39 -0.02 0.70 16 40 H 0.07 1.12 6.47 -2.38 -0.02 1.10 16 41 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.35 3.40 9.08 -89.69 -0.81 2.59 16 43 H 0.35 3.87 8.99 -89.69 -0.81 3.06 16 44 H 0.28 13.63 8.29 -92.71 -0.77 12.86 16 Total: -1.00 -68.74 355.28 -2.89 -71.63 By element: Atomic # 1 Polarization: 40.14 SS G_CDS: -1.38 Total: 38.77 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 6.70 Total: -1.05 kcal Atomic # 7 Polarization: -124.82 SS G_CDS: -9.38 Total: -134.20 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.86 Total: -16.99 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -68.74 -2.89 -71.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170499898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.391 kcal (2) G-P(sol) polarization free energy of solvation -68.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds