Wall clock time and date at job start Tue Mar 31 2020 03:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.52999 * 109.47451 * 184.99880 * 4 2 1 6 6 C 1.53002 * 109.46943 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.46754 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.46931 * 180.02562 * 7 6 5 9 9 C 1.36936 * 120.00186 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99698 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00556 * 179.97438 * 9 8 7 12 12 N 1.31625 * 119.99359 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00431 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47213 * 60.00117 * 13 11 9 15 15 H 1.48504 * 109.47222 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47214 * 299.99963 * 13 11 9 17 17 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 18 18 C 1.34780 * 119.99910 * 85.00011 * 17 2 1 19 19 O 1.21281 * 119.99723 * 0.02562 * 18 17 2 20 20 C 1.50693 * 120.00182 * 180.02562 * 18 17 2 21 21 C 1.50699 * 109.47318 * 179.97438 * 20 18 17 22 22 N 1.30493 * 125.64970 * 305.02462 * 21 20 18 23 23 C 1.34127 * 109.25525 * 180.02562 * 22 21 20 24 24 C 1.34664 * 108.02437 * 359.97438 * 23 22 21 25 25 N 1.35042 * 125.64921 * 124.71348 * 21 20 18 26 26 H 0.97000 * 126.40147 * 0.02562 * 25 21 20 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 31 31 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 32 32 H 1.08996 * 109.47443 * 300.00108 * 5 4 2 33 33 H 1.09000 * 109.46961 * 60.00367 * 5 4 2 34 34 H 1.09000 * 109.47511 * 300.00080 * 6 5 4 35 35 H 1.09000 * 109.47059 * 60.00345 * 6 5 4 36 36 H 1.08996 * 109.47287 * 299.99816 * 7 6 5 37 37 H 1.09000 * 109.47306 * 60.00190 * 7 6 5 38 38 H 0.97004 * 120.00316 * 359.97438 * 8 7 6 39 39 H 0.97006 * 119.99377 * 180.02562 * 12 11 9 40 40 H 0.96994 * 119.99975 * 265.00388 * 17 2 1 41 41 H 1.09007 * 109.46680 * 299.99959 * 20 18 17 42 42 H 1.09000 * 109.47439 * 59.99224 * 20 18 17 43 43 H 1.08010 * 125.98664 * 180.02562 * 23 22 21 44 44 H 1.07999 * 126.59445 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 6 4.0748 -1.3350 2.5627 7 6 5.5996 -1.2265 2.6274 8 7 6.0880 -1.9181 3.8230 9 6 7.4301 -1.9547 4.0926 10 1 8.1286 -1.4740 3.4236 11 6 7.8929 -2.6095 5.2257 12 7 7.0416 -3.1957 6.0407 13 14 9.7235 -2.6588 5.5938 14 1 10.2353 -1.2731 5.7462 15 1 9.9554 -3.4137 6.8515 16 1 10.4354 -3.3293 4.4762 17 7 2.0184 -0.6906 -1.1961 18 6 2.1471 -0.0183 -2.3571 19 8 1.8591 1.1586 -2.4115 20 6 2.6490 -0.7288 -3.5877 21 6 2.6992 0.2394 -4.7414 22 7 1.7011 0.9608 -5.1729 23 6 2.1093 1.7040 -6.2122 24 6 3.4098 1.4332 -6.4328 25 7 3.7861 0.5085 -5.4963 26 1 4.6680 0.1172 -5.3958 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.6054 -0.2617 2.1370 31 1 1.7517 -1.7714 1.2056 32 1 3.9995 -1.0728 0.4261 33 1 3.8532 0.4370 1.3574 34 1 3.6402 -0.8759 3.4506 35 1 3.7865 -2.3852 2.5186 36 1 6.0346 -1.6854 1.7396 37 1 5.8876 -0.1762 2.6717 38 1 5.4608 -2.3501 4.4237 39 1 7.3650 -3.6530 6.8328 40 1 2.2490 -1.6317 -1.1525 41 1 3.6482 -1.1213 -3.3984 42 1 1.9762 -1.5507 -3.8325 43 1 1.5015 2.3986 -6.7732 44 1 4.0365 1.8653 -7.1989 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175881068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:38 Heat of formation + Delta-G solvation = 11.402039 kcal Electronic energy + Delta-G solvation = -22583.498599 eV Core-core repulsion = 19150.392429 eV Total energy + Delta-G solvation = -3433.106169 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.29364 -39.87234 -36.96350 -35.24390 -33.29520 -32.75398 -32.52123 -31.23571 -30.19544 -27.58502 -27.42936 -24.23972 -22.53779 -21.83962 -21.58009 -20.79123 -20.63424 -20.42126 -18.23885 -17.35573 -17.00744 -16.35097 -15.68103 -15.07333 -14.99120 -14.72132 -14.36721 -14.14689 -13.87500 -13.78278 -13.59103 -13.23755 -13.11708 -13.01210 -12.91771 -12.42850 -12.24988 -11.74930 -11.43310 -11.25509 -10.98226 -10.80260 -10.70455 -10.43631 -10.30808 -10.25310 -10.17989 -10.01997 -9.95897 -9.66749 -9.17390 -8.86078 -8.67426 -6.91037 -5.75952 -3.04433 1.73669 2.51189 2.64271 2.92006 3.24234 3.43698 3.47710 3.49134 3.99680 4.50051 4.54199 4.61760 4.74437 4.87013 4.92874 4.97504 5.00855 5.17532 5.29272 5.41126 5.45028 5.49320 5.55076 5.63869 5.72044 5.80070 5.81174 5.93920 5.99243 6.14254 6.23907 6.30410 6.38201 6.42926 6.46261 6.49729 6.88888 6.92931 7.03465 7.35723 7.69369 7.88428 8.11541 8.43529 9.54017 10.13442 10.47964 11.47058 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.018746 B = 0.002349 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.292778 B =11917.521959 C =13163.000540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.087 0.913 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.724 5.724 18 C 0.518 3.482 19 O -0.515 6.515 20 C -0.057 4.057 21 C 0.218 3.782 22 N -0.461 5.461 23 C -0.028 4.028 24 C -0.056 4.056 25 N -0.566 5.566 26 H 0.418 0.582 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.015 0.985 37 H 0.016 0.984 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.400 0.600 41 H 0.108 0.892 42 H 0.119 0.881 43 H 0.169 0.831 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.821 4.543 -23.381 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.105 0.895 4 C -0.165 4.165 5 C -0.151 4.151 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.371 4.371 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.377 5.377 18 C 0.302 3.698 19 O -0.389 6.389 20 C -0.099 4.099 21 C -0.047 4.047 22 N -0.180 5.180 23 C -0.176 4.176 24 C -0.190 4.190 25 N -0.170 5.170 26 H 0.256 0.744 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.234 0.766 41 H 0.126 0.874 42 H 0.137 0.863 43 H 0.186 0.814 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -12.692 5.475 -23.107 26.925 hybrid contribution 2.272 -0.795 0.112 2.410 sum -10.419 4.680 -22.995 25.676 Atomic orbital electron populations 1.22176 0.95373 1.02060 1.02555 1.21015 0.93772 0.97627 0.83697 0.89462 1.21940 0.96772 1.00965 0.96800 1.21514 0.94048 1.01032 0.98548 1.21733 0.97194 1.00282 0.97177 1.20645 0.91053 0.95277 0.90521 1.42388 1.05325 1.64905 1.25292 1.19202 0.83926 1.28448 1.05498 0.91322 1.24758 0.97750 1.00973 0.97713 1.69658 1.32857 1.40693 1.15142 0.86249 0.85081 0.77478 0.77271 1.21269 1.21652 1.21302 1.46046 1.68038 1.14074 1.09585 1.20067 0.78296 0.87522 0.83963 1.90776 1.48193 1.15610 1.84321 1.19947 1.04612 0.96337 0.88978 1.22323 0.83379 1.01670 0.97305 1.70237 1.28977 1.08022 1.10793 1.22387 0.93605 1.03361 0.98289 1.22749 0.98624 0.98827 0.98792 1.43236 1.12734 1.34523 1.26478 0.74407 0.92511 0.92098 0.91632 0.90237 0.91314 0.92195 0.92056 0.92047 0.92107 0.96711 0.96620 0.78330 0.93481 0.76578 0.87354 0.86291 0.81373 0.80596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.48 37.16 0.35 -1.15 16 2 C 0.14 1.39 2.57 -67.93 -0.17 1.22 16 3 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 4 C -0.13 -1.21 4.75 -26.73 -0.13 -1.34 16 5 C -0.11 -1.35 5.10 -26.73 -0.14 -1.49 16 6 C -0.13 -1.96 5.33 -26.73 -0.14 -2.10 16 7 C 0.15 3.10 6.26 -4.04 -0.03 3.08 16 8 N -0.74 -19.09 5.60 -59.91 -0.34 -19.43 16 9 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 10 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 12 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 13 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 N -0.72 -6.21 4.53 -53.81 -0.24 -6.45 16 18 C 0.52 5.51 7.78 -10.99 -0.09 5.42 16 19 O -0.51 -7.95 15.21 5.56 0.08 -7.87 16 20 C -0.06 -0.42 6.33 -29.04 -0.18 -0.60 16 21 C 0.22 2.22 6.96 -155.42 -1.08 1.14 16 22 N -0.46 -6.03 10.58 -10.82 -0.11 -6.14 16 23 C -0.03 -0.29 11.87 -17.81 -0.21 -0.50 16 24 C -0.06 -0.44 12.04 -16.56 -0.20 -0.63 16 25 N -0.57 -4.27 6.15 -10.23 -0.06 -4.33 16 26 H 0.42 1.73 8.96 -40.82 -0.37 1.36 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.67 7.75 -51.93 -0.40 0.27 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.40 2.40 8.60 -40.82 -0.35 2.05 16 41 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.17 1.36 8.06 -52.48 -0.42 0.94 16 44 H 0.18 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -37.82 370.50 -8.94 -46.76 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -7.29 Total: 6.70 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -2.26 Total: -4.52 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -0.03 Total: -64.21 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.08 Total: -7.87 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.82 -8.94 -46.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175881068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.164 kcal (2) G-P(sol) polarization free energy of solvation -37.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds