Wall clock time and date at job start Tue Mar 31 2020 03:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 C 1.52989 * 109.47113 * 179.97438 * 5 4 2 7 7 C 1.53009 * 109.47113 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47006 * 180.02562 * 7 6 5 9 9 C 1.36939 * 119.99758 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99912 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00114 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99840 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99849 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47167 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46932 * 120.00285 * 13 11 9 16 16 H 1.48501 * 109.46742 * 240.00181 * 13 11 9 17 17 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 18 18 C 1.34781 * 119.99732 * 274.99921 * 17 2 1 19 19 O 1.21566 * 119.99841 * 359.97438 * 18 17 2 20 20 C 1.47712 * 119.99904 * 179.97438 * 18 17 2 21 21 C 1.41505 * 126.51568 * 179.70974 * 20 18 17 22 22 C 1.35358 * 105.49812 * 179.90344 * 21 20 18 23 23 N 1.35038 * 107.23335 * 0.35658 * 22 21 20 24 24 C 1.46498 * 124.88575 * 179.76109 * 23 22 21 25 25 N 1.28466 * 110.22746 * 359.76869 * 23 22 21 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 30 30 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 31 31 H 1.08999 * 109.47112 * 300.00392 * 5 4 2 32 32 H 1.09001 * 109.46642 * 60.00139 * 5 4 2 33 33 H 1.08999 * 109.47464 * 300.00192 * 6 5 4 34 34 H 1.09001 * 109.47240 * 60.00521 * 6 5 4 35 35 H 1.08997 * 109.46604 * 300.00391 * 7 6 5 36 36 H 1.08993 * 109.46833 * 59.99859 * 7 6 5 37 37 H 0.96996 * 120.00415 * 0.02562 * 8 7 6 38 38 H 0.97001 * 119.99587 * 179.97438 * 12 11 9 39 39 H 0.96998 * 120.00364 * 94.99433 * 17 2 1 40 40 H 1.07997 * 127.24666 * 0.02562 * 21 20 18 41 41 H 1.08005 * 126.38432 * 180.08585 * 22 21 20 42 42 H 1.09004 * 109.47377 * 269.97870 * 24 23 22 43 43 H 1.09006 * 109.47132 * 29.97536 * 24 23 22 44 44 H 1.09001 * 109.46938 * 149.97400 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0748 -1.3351 -2.5626 7 6 5.5996 -1.2266 -2.6275 8 7 6.0878 -1.9173 -3.8237 9 6 7.4298 -1.9527 -4.0940 10 1 8.1283 -1.4719 -3.4251 11 6 7.8925 -2.6076 -5.2271 12 7 7.0414 -3.1940 -6.0420 13 14 9.7233 -2.6565 -5.5954 14 1 10.4616 -1.9286 -4.5324 15 1 10.1820 -4.0683 -5.6382 16 1 9.9814 -2.0122 -6.9082 17 7 2.0184 -0.6907 1.1961 18 6 2.1472 -0.0183 2.3571 19 8 1.8585 1.1613 2.4116 20 6 2.6390 -0.7148 3.5633 21 6 2.8316 -0.1458 4.8445 22 6 3.2878 -1.1544 5.6234 23 7 3.3685 -2.2554 4.8456 24 6 3.8250 -3.5710 5.3005 25 7 2.9875 -1.9830 3.6494 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7517 -1.7715 -1.2056 30 1 1.6053 -0.2617 -2.1370 31 1 3.8532 0.4369 -1.3574 32 1 3.9994 -1.0729 -0.4261 33 1 3.7864 -2.3854 -2.5186 34 1 3.6402 -0.8760 -3.4506 35 1 5.8875 -0.1763 -2.6718 36 1 6.0346 -1.6854 -1.7396 37 1 5.4605 -2.3488 -4.4246 38 1 7.3647 -3.6512 -6.8340 39 1 2.2491 -1.6318 1.1526 40 1 2.6506 0.8773 5.1393 41 1 3.5440 -1.0897 6.6706 42 1 4.9034 -3.6494 5.1620 43 1 3.5846 -3.6939 6.3566 44 1 3.3268 -4.3486 4.7216 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176564034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:13 Heat of formation + Delta-G solvation = 35.350550 kcal Electronic energy + Delta-G solvation = -22751.404709 eV Core-core repulsion = 19319.337024 eV Total energy + Delta-G solvation = -3432.067684 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.89631 -39.67878 -36.87222 -35.19154 -33.82496 -33.15842 -31.61951 -30.86930 -30.18020 -27.73655 -27.38267 -24.34010 -23.55222 -21.98134 -21.76444 -20.77290 -20.59493 -20.19948 -18.10116 -16.97010 -16.82041 -16.58497 -16.22889 -15.01665 -14.87819 -14.66438 -14.39703 -14.10624 -13.86968 -13.52842 -13.46887 -13.18079 -13.09222 -12.99319 -12.85811 -12.77533 -12.26428 -11.69577 -11.39568 -11.22037 -11.19204 -10.94180 -10.79046 -10.63842 -10.35855 -10.24992 -10.16910 -9.92466 -9.63116 -9.56946 -9.36831 -9.08610 -8.82523 -6.86060 -5.72104 -3.00109 1.36609 1.87191 2.13803 3.09029 3.31845 3.45965 3.51299 3.53924 4.02232 4.46374 4.53079 4.60809 4.63994 4.71527 4.91763 4.96761 5.04059 5.08379 5.34259 5.37875 5.47514 5.50338 5.54161 5.59770 5.69675 5.77723 5.85862 5.97501 6.03640 6.10591 6.18968 6.31366 6.38211 6.41188 6.44604 6.49393 6.54312 6.96293 7.00130 7.35201 7.66595 7.74937 8.13646 8.47551 9.58179 10.18044 10.52785 11.51226 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.014462 B = 0.002713 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.644002 B =10316.930353 C =11675.200980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.090 0.910 4 C -0.126 4.126 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.236 4.236 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.291 1.291 17 N -0.709 5.709 18 C 0.606 3.394 19 O -0.536 6.536 20 C -0.018 4.018 21 C -0.179 4.179 22 C -0.021 4.021 23 N -0.285 5.285 24 C 0.085 3.915 25 N -0.260 5.260 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.017 0.983 36 H 0.016 0.984 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.406 0.594 40 H 0.162 0.838 41 H 0.182 0.818 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.514 1.485 25.192 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.108 0.892 4 C -0.164 4.164 5 C -0.153 4.153 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.368 4.368 10 H 0.088 0.912 11 C -0.213 4.213 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.360 5.360 18 C 0.390 3.610 19 O -0.411 6.411 20 C -0.178 4.178 21 C -0.207 4.207 22 C -0.163 4.163 23 N -0.073 5.073 24 C -0.055 4.055 25 N -0.096 5.096 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.216 0.784 38 H 0.064 0.936 39 H 0.242 0.758 40 H 0.180 0.820 41 H 0.199 0.801 42 H 0.105 0.895 43 H 0.114 0.886 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.410 1.269 24.648 28.088 hybrid contribution 0.984 -0.087 0.114 0.994 sum -12.426 1.182 24.762 27.730 Atomic orbital electron populations 1.22180 0.95308 1.02127 1.02508 1.21094 0.93810 0.97770 0.83704 0.89155 1.21936 0.96880 1.00981 0.96630 1.21526 0.94006 1.01095 0.98673 1.21721 0.97183 1.00277 0.97115 1.20650 0.91092 0.95302 0.90482 1.42404 1.05340 1.64961 1.25209 1.19312 0.83967 1.28108 1.05380 0.91196 1.24750 0.97716 1.01054 0.97758 1.69676 1.32653 1.40927 1.15175 0.86108 0.85125 0.77187 0.77769 1.20565 1.21897 1.21860 1.45965 1.66449 1.14471 1.09155 1.16870 0.77062 0.85594 0.81444 1.90784 1.50767 1.14959 1.84583 1.21986 1.08676 0.90898 0.96250 1.21792 1.06275 1.00834 0.91822 1.22875 1.07407 0.86705 0.99353 1.45424 1.45586 1.10464 1.05821 1.22211 1.01753 0.80109 1.01416 1.73523 1.15604 1.17267 1.03224 0.92218 0.91429 0.92478 0.91316 0.90116 0.91958 0.92078 0.92143 0.92055 0.96556 0.96644 0.78354 0.93623 0.75822 0.82015 0.80059 0.89463 0.88594 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.48 37.16 0.35 -1.23 16 2 C 0.14 1.54 2.57 -67.93 -0.17 1.37 16 3 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 4 C -0.13 -1.36 4.75 -26.73 -0.13 -1.49 16 5 C -0.11 -1.54 5.10 -26.73 -0.14 -1.68 16 6 C -0.13 -2.09 5.33 -26.73 -0.14 -2.23 16 7 C 0.15 3.26 6.26 -4.04 -0.03 3.24 16 8 N -0.74 -19.67 5.60 -59.91 -0.34 -20.01 16 9 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 10 H 0.07 2.00 7.83 -52.49 -0.41 1.58 16 11 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 12 N -0.94 -29.10 13.06 55.49 0.72 -28.37 16 13 Si 0.91 22.99 29.55 -169.99 -5.02 17.96 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 16 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 17 N -0.71 -8.17 4.53 -54.79 -0.25 -8.42 16 18 C 0.61 8.16 7.79 -12.39 -0.10 8.07 16 19 O -0.54 -8.63 16.59 5.31 0.09 -8.54 16 20 C -0.02 -0.22 7.13 -82.76 -0.59 -0.81 16 21 C -0.18 -1.82 10.81 -39.36 -0.43 -2.24 16 22 C -0.02 -0.15 11.46 -17.17 -0.20 -0.35 16 23 N -0.28 -2.33 3.70 -68.12 -0.25 -2.58 16 24 C 0.09 0.31 11.31 59.85 0.68 0.99 16 25 N -0.26 -2.90 11.67 33.42 0.39 -2.51 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.84 7.75 -51.93 -0.40 0.43 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.38 10.65 7.67 -40.82 -0.31 10.34 16 38 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.41 4.30 8.33 -40.82 -0.34 3.96 16 40 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.18 0.59 8.06 -52.48 -0.42 0.17 16 42 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.10 0.07 8.13 -51.93 -0.42 -0.35 16 44 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -36.32 372.91 -7.50 -43.82 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.34 Total: 7.10 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.13 Total: -4.07 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: 0.28 Total: -61.89 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.32 -7.50 -43.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176564034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.172 kcal (2) G-P(sol) polarization free energy of solvation -36.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds