Wall clock time and date at job start Tue Mar 31 2020 03:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 C 1.52989 * 109.47113 * 179.97438 * 5 4 2 7 7 C 1.53009 * 109.47113 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47006 * 180.02562 * 7 6 5 9 9 C 1.36939 * 119.99758 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99912 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00114 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99840 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99849 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47167 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46932 * 120.00285 * 13 11 9 16 16 H 1.48501 * 109.46742 * 240.00181 * 13 11 9 17 17 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 18 18 C 1.34781 * 119.99732 * 274.99921 * 17 2 1 19 19 O 1.21566 * 119.99841 * 359.97438 * 18 17 2 20 20 C 1.47712 * 119.99904 * 179.97438 * 18 17 2 21 21 C 1.41505 * 126.51568 * 179.70974 * 20 18 17 22 22 C 1.35358 * 105.49812 * 179.90344 * 21 20 18 23 23 N 1.35038 * 107.23335 * 0.35658 * 22 21 20 24 24 C 1.46498 * 124.88575 * 179.76109 * 23 22 21 25 25 N 1.28466 * 110.22746 * 359.76869 * 23 22 21 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 30 30 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 31 31 H 1.08999 * 109.47112 * 300.00392 * 5 4 2 32 32 H 1.09001 * 109.46642 * 60.00139 * 5 4 2 33 33 H 1.08999 * 109.47464 * 300.00192 * 6 5 4 34 34 H 1.09001 * 109.47240 * 60.00521 * 6 5 4 35 35 H 1.08997 * 109.46604 * 300.00391 * 7 6 5 36 36 H 1.08993 * 109.46833 * 59.99859 * 7 6 5 37 37 H 0.96996 * 120.00415 * 0.02562 * 8 7 6 38 38 H 0.97001 * 119.99587 * 179.97438 * 12 11 9 39 39 H 0.96998 * 120.00364 * 94.99433 * 17 2 1 40 40 H 1.07997 * 127.24666 * 0.02562 * 21 20 18 41 41 H 1.08005 * 126.38432 * 180.08585 * 22 21 20 42 42 H 1.09004 * 109.47377 * 269.97870 * 24 23 22 43 43 H 1.09006 * 109.47132 * 29.97536 * 24 23 22 44 44 H 1.09001 * 109.46938 * 149.97400 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0748 -1.3351 -2.5626 7 6 5.5996 -1.2266 -2.6275 8 7 6.0878 -1.9173 -3.8237 9 6 7.4298 -1.9527 -4.0940 10 1 8.1283 -1.4719 -3.4251 11 6 7.8925 -2.6076 -5.2271 12 7 7.0414 -3.1940 -6.0420 13 14 9.7233 -2.6565 -5.5954 14 1 10.4616 -1.9286 -4.5324 15 1 10.1820 -4.0683 -5.6382 16 1 9.9814 -2.0122 -6.9082 17 7 2.0184 -0.6907 1.1961 18 6 2.1472 -0.0183 2.3571 19 8 1.8585 1.1613 2.4116 20 6 2.6390 -0.7148 3.5633 21 6 2.8316 -0.1458 4.8445 22 6 3.2878 -1.1544 5.6234 23 7 3.3685 -2.2554 4.8456 24 6 3.8250 -3.5710 5.3005 25 7 2.9875 -1.9830 3.6494 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7517 -1.7715 -1.2056 30 1 1.6053 -0.2617 -2.1370 31 1 3.8532 0.4369 -1.3574 32 1 3.9994 -1.0729 -0.4261 33 1 3.7864 -2.3854 -2.5186 34 1 3.6402 -0.8760 -3.4506 35 1 5.8875 -0.1763 -2.6718 36 1 6.0346 -1.6854 -1.7396 37 1 5.4605 -2.3488 -4.4246 38 1 7.3647 -3.6512 -6.8340 39 1 2.2491 -1.6318 1.1526 40 1 2.6506 0.8773 5.1393 41 1 3.5440 -1.0897 6.6706 42 1 4.9034 -3.6494 5.1620 43 1 3.5846 -3.6939 6.3566 44 1 3.3268 -4.3486 4.7216 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176564034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:12 Heat of formation + Delta-G solvation = 9.992470 kcal Electronic energy + Delta-G solvation = -22752.504317 eV Core-core repulsion = 19319.337024 eV Total energy + Delta-G solvation = -3433.167293 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.57537 -40.66605 -38.04111 -36.83407 -34.82058 -34.38949 -32.98037 -31.91883 -31.35740 -28.83704 -28.28561 -25.97541 -24.59681 -23.48844 -22.41754 -22.06391 -21.69440 -21.07367 -19.14851 -18.79919 -17.64770 -17.23638 -17.09353 -16.69615 -16.27485 -15.83084 -15.49476 -15.27382 -15.16749 -14.72429 -14.64843 -14.22665 -14.08546 -14.03005 -13.54350 -13.34840 -13.24437 -13.03605 -12.90723 -12.87021 -12.47363 -12.30293 -12.12129 -11.96597 -11.89898 -11.81951 -11.52710 -11.41074 -11.20107 -10.96574 -10.31528 -10.13208 -9.93106 -9.03450 -7.98085 -5.27664 0.53530 1.21113 1.45539 1.47043 1.57452 1.62180 2.23136 2.38165 2.54103 3.35168 3.37953 3.59313 3.97332 4.01033 4.04056 4.06486 4.14766 4.34324 4.40635 4.41355 4.47938 4.59490 4.63749 4.71316 4.75629 4.76176 4.80340 4.86055 4.92709 4.97800 4.99956 5.10872 5.24981 5.31749 5.34670 5.42582 5.44402 5.51148 5.57068 5.90035 6.25021 6.45100 6.90941 7.18093 7.30485 8.06427 8.30810 9.25879 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.014462 B = 0.002713 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.644002 B =10316.930353 C =11675.200980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 H 0.073 0.927 4 C -0.116 4.116 5 C -0.105 4.105 6 C -0.111 4.111 7 C 0.149 3.851 8 N -0.749 5.749 9 C -0.251 4.251 10 H 0.072 0.928 11 C -0.077 4.077 12 N -0.970 5.970 13 Si 0.977 3.023 14 H -0.267 1.267 15 H -0.289 1.289 16 H -0.290 1.290 17 N -0.702 5.702 18 C 0.601 3.399 19 O -0.573 6.573 20 C -0.050 4.050 21 C -0.208 4.208 22 C 0.000 4.000 23 N -0.281 5.281 24 C 0.075 3.925 25 N -0.279 5.279 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.014 0.986 36 H 0.014 0.986 37 H 0.375 0.625 38 H 0.253 0.747 39 H 0.411 0.589 40 H 0.162 0.838 41 H 0.228 0.772 42 H 0.096 0.904 43 H 0.132 0.868 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.177 0.677 26.787 29.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 H 0.091 0.909 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.149 4.149 7 C 0.022 3.978 8 N -0.392 5.392 9 C -0.382 4.382 10 H 0.090 0.910 11 C -0.269 4.269 12 N -0.620 5.620 13 Si 0.805 3.195 14 H -0.192 1.192 15 H -0.216 1.216 16 H -0.217 1.217 17 N -0.353 5.353 18 C 0.387 3.613 19 O -0.451 6.451 20 C -0.209 4.209 21 C -0.236 4.236 22 C -0.143 4.143 23 N -0.070 5.070 24 C -0.064 4.064 25 N -0.117 5.117 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.032 0.968 36 H 0.032 0.968 37 H 0.206 0.794 38 H 0.062 0.938 39 H 0.248 0.752 40 H 0.180 0.820 41 H 0.244 0.756 42 H 0.115 0.885 43 H 0.150 0.850 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.075 0.447 26.262 29.340 hybrid contribution 0.898 0.122 -0.285 0.950 sum -12.177 0.569 25.977 28.695 Atomic orbital electron populations 1.22117 0.94013 1.02821 1.02498 1.21087 0.94769 0.96847 0.83552 0.90875 1.21847 0.94654 1.01895 0.96936 1.21421 0.95936 1.00237 0.96773 1.21590 0.93749 1.00882 0.98693 1.20838 0.94258 0.94284 0.88383 1.42631 1.04601 1.65371 1.26548 1.19695 0.85287 1.27754 1.05494 0.90956 1.25630 1.02407 1.01094 0.97743 1.69827 1.34695 1.41894 1.15620 0.85025 0.79668 0.77147 0.77626 1.19166 1.21634 1.21724 1.45964 1.65801 1.14598 1.08910 1.17165 0.76601 0.85307 0.82266 1.90744 1.52642 1.16461 1.85287 1.21956 1.10556 0.91794 0.96546 1.22029 1.07884 1.01892 0.91780 1.23490 1.04751 0.85322 1.00704 1.45924 1.44012 1.12047 1.05032 1.22628 1.02261 0.78015 1.03464 1.73457 1.16477 1.16769 1.05029 0.93757 0.89905 0.91386 0.90052 0.88842 0.92375 0.92376 0.91966 0.92025 0.96835 0.96794 0.79363 0.93832 0.75226 0.82005 0.75592 0.88538 0.85017 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.48 71.98 0.68 -2.22 16 2 C 0.14 3.05 2.57 44.99 0.12 3.17 16 3 H 0.07 1.86 7.58 -2.39 -0.02 1.84 16 4 C -0.12 -2.33 4.75 30.60 0.15 -2.18 16 5 C -0.11 -2.75 5.10 30.59 0.16 -2.59 16 6 C -0.11 -3.64 5.33 30.59 0.16 -3.48 16 7 C 0.15 6.36 6.26 86.38 0.54 6.90 16 8 N -0.75 -40.34 5.60 -343.45 -1.92 -42.26 16 9 C -0.25 -14.69 9.99 84.03 0.84 -13.85 16 10 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 11 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 12 N -0.97 -60.73 13.06 21.65 0.28 -60.44 16 13 Si 0.98 47.16 29.55 68.60 2.03 49.19 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 16 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 17 N -0.70 -16.31 4.53 -445.52 -2.02 -18.32 16 18 C 0.60 16.81 7.79 86.75 0.68 17.49 16 19 O -0.57 -19.40 16.59 -3.92 -0.07 -19.46 16 20 C -0.05 -1.25 7.13 42.46 0.30 -0.94 16 21 C -0.21 -4.17 10.81 22.41 0.24 -3.92 16 22 C 0.00 0.00 11.46 83.53 0.96 0.96 16 23 N -0.28 -4.07 3.70 -369.44 -1.37 -5.44 16 24 C 0.07 0.34 11.31 127.77 1.44 1.78 16 25 N -0.28 -6.09 11.67 -48.17 -0.56 -6.65 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.55 7.75 -2.39 -0.02 1.53 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.37 21.09 7.67 -92.71 -0.71 20.38 16 38 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.41 8.63 8.33 -92.71 -0.77 7.86 16 40 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 41 H 0.23 0.52 8.06 -2.91 -0.02 0.50 16 42 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 43 H 0.13 -0.34 8.13 -2.38 -0.02 -0.36 16 44 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -79.54 372.91 2.62 -76.92 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: -0.49 Total: 29.44 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 6.73 Total: -2.97 kcal Atomic # 7 Polarization: -127.53 SS G_CDS: -5.59 Total: -133.12 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.07 Total: -19.46 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -79.54 2.62 -76.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176564034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.911 kcal (2) G-P(sol) polarization free energy of solvation -79.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds