Wall clock time and date at job start Tue Mar 31 2020 03:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46963 * 110.99715 * 2 1 4 4 C 1.53052 * 109.36078 * 176.80917 * 3 2 1 5 5 N 1.46959 * 109.36533 * 58.40610 * 4 3 2 6 6 C 1.46901 * 111.00260 * 176.80959 * 5 4 3 7 7 C 1.46963 * 110.87789 * 300.67380 * 5 4 3 8 8 H 1.09000 * 109.50729 * 299.34916 * 7 5 4 9 9 C 1.50698 * 109.48980 * 179.28941 * 7 5 4 10 10 O 1.21283 * 119.99893 * 331.32166 * 9 7 5 11 11 N 1.34774 * 119.99926 * 151.32672 * 9 7 5 12 12 C 1.46498 * 120.00098 * 5.13859 * 11 9 7 13 13 C 1.50695 * 109.47154 * 89.99816 * 12 11 9 14 14 H 1.07998 * 120.00588 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00023 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99776 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00212 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47161 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47429 * 119.99621 * 17 15 13 20 20 H 1.48496 * 109.47142 * 239.99812 * 17 15 13 21 21 C 1.46507 * 119.99791 * 185.13508 * 11 9 7 22 22 C 1.52994 * 109.46782 * 94.72559 * 21 11 9 23 23 C 1.47198 * 109.47125 * 175.05525 * 22 21 11 24 24 N 9.32034 * 129.88219 * 223.13074 * 2 1 3 25 25 C 1.46959 * 111.00260 * 236.20388 * 2 1 3 26 26 H 1.09002 * 109.46873 * 183.79933 * 1 2 3 27 27 H 1.09003 * 109.47058 * 303.80157 * 1 2 3 28 28 H 1.08998 * 109.46968 * 63.80080 * 1 2 3 29 29 H 1.08999 * 109.48861 * 56.84936 * 3 2 1 30 30 H 1.08996 * 109.51095 * 296.78669 * 3 2 1 31 31 H 1.08999 * 109.49505 * 298.43155 * 4 3 2 32 32 H 1.09004 * 109.50312 * 178.37658 * 4 3 2 33 33 H 1.08997 * 109.47421 * 183.79386 * 6 5 4 34 34 H 1.08994 * 109.46858 * 303.79785 * 6 5 4 35 35 H 1.09000 * 109.46846 * 63.79367 * 6 5 4 36 36 H 1.09006 * 109.46824 * 209.99914 * 12 11 9 37 37 H 1.08997 * 109.46742 * 329.99751 * 12 11 9 38 38 H 0.96998 * 120.00017 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.46956 * 214.72431 * 21 11 9 40 40 H 1.08998 * 109.46714 * 334.72551 * 21 11 9 41 41 H 1.08999 * 109.47296 * 295.05104 * 22 21 11 42 42 H 1.09001 * 109.47470 * 55.05221 * 22 21 11 43 43 H 1.08994 * 109.48708 * 63.21533 * 25 2 1 44 44 H 1.09004 * 109.48472 * 303.15171 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 0.0804 5 7 4.0501 0.5660 -1.0598 6 6 5.5191 0.5660 -1.0598 7 6 3.5235 -0.8060 -1.0598 8 1 3.8254 -1.3118 -0.1425 9 6 4.0688 -1.5539 -2.2491 10 8 4.3625 -0.9528 -3.2607 11 7 4.2299 -2.8906 -2.1886 12 6 3.7712 -3.6311 -1.0107 13 6 2.3429 -4.0657 -1.2154 14 1 1.8283 -3.8158 -2.1315 15 6 1.6929 -4.7826 -0.2332 16 7 2.3196 -5.0874 0.8821 17 14 -0.0774 -5.3220 -0.4873 18 1 -0.5506 -4.8574 -1.8159 19 1 -0.1575 -6.8035 -0.4231 20 1 -0.9315 -4.7336 0.5754 21 6 4.8638 -3.6030 -3.3008 22 6 6.3572 -3.7708 -3.0139 23 6 6.9714 -4.5885 -4.0726 24 7 7.4453 -5.2196 -4.8896 25 6 1.9957 -0.7631 -1.1401 26 1 -0.3633 -1.0254 0.0681 27 1 -0.3633 0.5717 0.8540 28 1 -0.3633 0.4537 -0.9221 29 1 1.6013 1.9129 0.8603 30 1 1.6938 1.8778 -0.9171 31 1 3.8254 0.8481 1.0107 32 1 3.9180 2.3448 0.0515 33 1 5.8825 0.0522 -1.9497 34 1 5.8824 1.5936 -1.0597 35 1 5.8824 0.0522 -0.1697 36 1 4.4009 -4.5089 -0.8655 37 1 3.8334 -2.9898 -0.1315 38 1 1.8624 -5.5920 1.5729 39 1 4.4029 -4.5843 -3.4133 40 1 4.7322 -3.0322 -4.2199 41 1 6.8346 -2.7913 -2.9884 42 1 6.4890 -4.2644 -2.0510 43 1 1.6938 -0.2820 -2.0703 44 1 1.6014 -1.7789 -1.1110 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185258608.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:02 Heat of formation + Delta-G solvation = -4.873529 kcal Electronic energy + Delta-G solvation = -25206.652648 eV Core-core repulsion = 21772.840717 eV Total energy + Delta-G solvation = -3433.811931 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.46571 -39.44732 -37.91187 -36.85110 -36.13668 -34.68492 -33.06028 -31.57678 -30.12020 -29.02278 -26.49226 -26.01955 -24.99558 -24.36929 -23.58046 -21.04811 -19.82326 -18.76538 -18.27917 -18.12187 -17.35900 -16.70026 -16.49607 -16.16153 -15.93577 -15.72945 -15.54453 -15.30986 -15.01402 -14.90549 -14.43374 -14.22304 -13.95985 -13.67045 -13.49347 -13.39928 -13.25025 -13.18561 -12.93004 -12.76072 -12.70219 -12.57117 -12.47012 -12.37044 -12.11761 -11.93151 -11.77949 -11.69186 -11.57423 -10.64200 -10.43763 -9.49415 -9.35062 -9.18317 -8.13617 -6.23397 1.42237 1.47990 1.54852 1.56961 1.75812 1.78013 2.17336 2.46276 2.97056 3.03097 3.19321 3.23462 3.74487 3.97507 4.09042 4.13056 4.14934 4.18359 4.27562 4.42979 4.54229 4.56803 4.61559 4.66631 4.74109 4.75976 4.85718 4.91547 4.96345 5.02159 5.03008 5.07122 5.09899 5.10330 5.34418 5.69404 5.84999 5.93862 5.98406 6.13912 6.16541 6.23123 6.54452 6.56367 6.87844 7.34233 7.47770 8.92184 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.009609 B = 0.007778 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.183446 B = 3599.110237 C = 5927.691320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.552 5.552 3 C 0.054 3.946 4 C 0.059 3.941 5 N -0.539 5.539 6 C 0.024 3.976 7 C 0.085 3.915 8 H 0.064 0.936 9 C 0.527 3.473 10 O -0.568 6.568 11 N -0.594 5.594 12 C 0.249 3.751 13 C -0.535 4.535 14 H 0.052 0.948 15 C 0.033 3.967 16 N -0.912 5.912 17 Si 0.937 3.063 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.279 1.279 21 C 0.121 3.879 22 C -0.030 4.030 23 C 0.245 3.755 24 N -0.489 5.489 25 C 0.075 3.925 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.028 0.972 29 H 0.103 0.897 30 H 0.036 0.964 31 H 0.040 0.960 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.028 0.972 36 H 0.035 0.965 37 H 0.033 0.967 38 H 0.265 0.735 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.022 0.978 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.602 11.107 1.998 11.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.277 5.277 3 C -0.074 4.074 4 C -0.069 4.069 5 N -0.265 5.265 6 C -0.123 4.123 7 C -0.027 4.027 8 H 0.082 0.918 9 C 0.314 3.686 10 O -0.447 6.447 11 N -0.325 5.325 12 C 0.128 3.872 13 C -0.574 4.574 14 H 0.070 0.930 15 C -0.168 4.168 16 N -0.551 5.551 17 Si 0.764 3.236 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.205 1.205 21 C -0.004 4.004 22 C -0.071 4.071 23 C -0.072 4.072 24 N -0.167 5.167 25 C -0.054 4.054 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.047 0.953 29 H 0.122 0.878 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.125 0.875 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.142 0.858 42 H 0.147 0.853 43 H 0.041 0.959 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.436 10.372 0.432 10.663 hybrid contribution -1.258 -0.609 0.278 1.425 sum 1.178 9.762 0.710 9.859 Atomic orbital electron populations 1.22344 0.86079 1.02205 1.01266 1.62106 1.08996 1.14411 1.42209 1.22304 0.94683 0.88733 1.01643 1.22287 0.94584 0.99115 0.90910 1.61946 1.09100 1.11674 1.43778 1.22428 0.86084 1.03267 1.00559 1.21446 0.95773 0.89599 0.95835 0.91849 1.20388 0.77222 0.82247 0.88737 1.90596 1.52830 1.68453 1.32863 1.48141 1.57687 1.06209 1.20428 1.19231 0.93909 0.91716 0.82310 1.21577 0.98408 1.34939 1.02445 0.93006 1.25407 1.00815 0.95755 0.94828 1.69973 1.38235 1.39610 1.07268 0.85816 0.81641 0.77941 0.78177 1.19666 1.20984 1.20467 1.21190 0.90563 0.98290 0.90343 1.19690 0.94576 0.99165 0.93650 1.29197 0.92229 0.92435 0.93351 1.81209 1.11166 1.12004 1.12303 1.21986 0.92241 0.99950 0.91248 0.92531 0.89153 0.95310 0.87846 0.94547 0.94218 0.87483 0.92048 0.89239 0.95294 0.94675 0.94925 0.92557 0.89821 0.90089 0.85812 0.85339 0.95936 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 9.60 127.69 1.23 2.01 16 2 N -0.55 -17.29 4.97 -921.91 -4.58 -21.87 16 3 C 0.05 1.35 5.62 86.31 0.49 1.83 16 4 C 0.06 1.44 5.62 86.31 0.49 1.93 16 5 N -0.54 -16.41 4.53 -900.95 -4.08 -20.49 16 6 C 0.02 0.64 9.17 127.69 1.17 1.81 16 7 C 0.09 3.01 1.68 44.17 0.07 3.09 16 8 H 0.06 2.44 6.02 -2.39 -0.01 2.42 16 9 C 0.53 19.65 5.79 87.66 0.51 20.16 16 10 O -0.57 -23.03 14.86 -3.04 -0.05 -23.08 16 11 N -0.59 -21.36 2.46 -826.17 -2.03 -23.39 16 12 C 0.25 10.35 5.05 85.63 0.43 10.78 16 13 C -0.54 -25.17 7.32 25.60 0.19 -24.99 16 14 H 0.05 2.52 7.79 -2.91 -0.02 2.50 16 15 C 0.03 1.62 5.46 84.66 0.46 2.08 16 16 N -0.91 -46.94 13.29 21.45 0.28 -46.65 16 17 Si 0.94 39.85 29.54 68.60 2.03 41.88 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 21 C 0.12 3.67 5.45 86.38 0.47 4.14 16 22 C -0.03 -0.70 6.02 28.79 0.17 -0.52 16 23 C 0.25 6.63 15.43 89.44 1.38 8.01 16 24 N -0.49 -15.79 18.54 20.01 0.37 -15.42 16 25 C 0.07 2.73 4.88 86.31 0.42 3.15 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.09 1.95 8.13 -2.39 -0.02 1.93 16 28 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 2.01 8.13 -2.39 -0.02 1.99 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 2.02 8.13 -2.38 -0.02 2.00 16 33 H 0.06 1.81 6.18 -2.39 -0.01 1.80 16 34 H 0.09 1.88 8.13 -2.39 -0.02 1.87 16 35 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.04 1.49 8.07 -2.38 -0.02 1.48 16 37 H 0.03 1.46 5.75 -2.39 -0.01 1.45 16 38 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 39 H 0.08 2.60 8.11 -2.39 -0.02 2.58 16 40 H 0.08 2.56 7.23 -2.39 -0.02 2.54 16 41 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.09 3.75 5.86 -2.38 -0.01 3.74 16 Total: -1.00 -59.34 357.56 0.41 -58.93 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.98 Total: 16.61 kcal Atomic # 6 Polarization: 25.99 SS G_CDS: 7.48 Total: 33.47 kcal Atomic # 7 Polarization: -117.79 SS G_CDS: -10.03 Total: -127.82 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.05 Total: -23.08 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -59.34 0.41 -58.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185258608.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.058 kcal (2) G-P(sol) polarization free energy of solvation -59.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds