Wall clock time and date at job start Tue Mar 31 2020 03:11:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31003 * 1
3 3 C 1.50704 * 120.00215 * 2 1
4 4 O 1.42901 * 109.47181 * 134.99661 * 3 2 1
5 5 C 1.42900 * 113.99780 * 179.97438 * 4 3 2
6 6 C 1.50699 * 109.47036 * 180.02562 * 5 4 3
7 7 O 1.21288 * 119.99883 * 359.97438 * 6 5 4
8 8 N 1.34778 * 120.00217 * 179.97438 * 6 5 4
9 9 C 1.46495 * 120.00084 * 179.97438 * 8 6 5
10 10 H 1.09007 * 112.88436 * 23.65992 * 9 8 6
11 11 C 1.53949 * 113.66570 * 252.18858 * 9 8 6
12 12 C 1.53951 * 87.29734 * 220.79629 * 11 9 8
13 13 H 1.08996 * 113.66175 * 139.20610 * 12 11 9
14 14 N 1.46504 * 113.66187 * 270.26207 * 12 11 9
15 15 C 1.36933 * 119.99676 * 252.18514 * 14 12 11
16 16 H 1.07997 * 120.00318 * 0.02562 * 15 14 12
17 17 C 1.38809 * 119.99863 * 179.97438 * 15 14 12
18 18 N 1.31618 * 120.00271 * 0.02562 * 17 15 14
19 19 Si 1.86808 * 120.00245 * 180.02562 * 17 15 14
20 20 H 1.48502 * 109.46787 * 60.00169 * 19 17 15
21 21 H 1.48494 * 109.47063 * 180.02562 * 19 17 15
22 22 H 1.48502 * 109.46983 * 300.00292 * 19 17 15
23 23 C 1.52903 * 113.66201 * 155.00243 * 9 8 6
24 24 C 1.52910 * 121.13886 * 13.65415 * 23 9 8
25 25 C 1.53950 * 86.78717 * 209.38108 * 24 23 9
26 26 C 1.52917 * 121.14033 * 265.09502 * 23 9 8
27 27 H 1.08002 * 119.99430 * 0.02562 * 1 2 3
28 28 H 1.07990 * 120.00005 * 179.97438 * 1 2 3
29 29 H 1.08000 * 119.99842 * 179.97438 * 2 1 3
30 30 H 1.09000 * 109.46984 * 14.99904 * 3 2 1
31 31 H 1.08999 * 109.46713 * 254.99799 * 3 2 1
32 32 H 1.08992 * 109.46960 * 60.00020 * 5 4 3
33 33 H 1.09002 * 109.46934 * 299.99708 * 5 4 3
34 34 H 0.96996 * 119.99871 * 0.02562 * 8 6 5
35 35 H 1.09000 * 113.57567 * 335.40192 * 11 9 8
36 36 H 1.08998 * 113.57943 * 106.11270 * 11 9 8
37 37 H 0.96995 * 120.00051 * 72.18674 * 14 12 11
38 38 H 0.96999 * 120.00601 * 179.97438 * 18 17 15
39 39 H 1.09007 * 113.66009 * 323.85167 * 24 23 9
40 40 H 1.09002 * 113.66292 * 94.90250 * 24 23 9
41 41 H 1.09001 * 113.57502 * 270.13001 * 25 24 23
42 42 H 1.08998 * 113.58006 * 139.33297 * 25 24 23
43 43 H 1.09001 * 113.65915 * 265.09197 * 26 23 9
44 44 H 1.08997 * 113.66386 * 36.04920 * 26 23 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0636 1.3051 0.0000
4 8 3.1268 1.2413 0.9527
5 6 3.9085 2.4349 1.0321
6 6 4.9947 2.2564 2.0613
7 8 5.0897 1.2103 2.6675
8 7 5.8606 3.2594 2.3081
9 6 6.9162 3.0861 3.3090
10 1 7.1686 2.0398 3.4821
11 6 6.6803 3.8889 4.6012
12 6 8.1852 4.2130 4.5881
13 1 8.4135 5.2421 4.8652
14 7 9.0040 3.2329 5.3061
15 6 9.5648 3.5611 6.5114
16 1 9.4033 4.5422 6.9330
17 6 10.3401 2.6324 7.1920
18 7 10.5366 1.4365 6.6786
19 14 11.1047 3.0798 8.8367
20 1 10.0320 3.4284 9.8027
21 1 11.8799 1.9233 9.3531
22 1 12.0103 4.2436 8.6614
23 6 8.1342 3.9810 3.0776
24 6 8.0786 5.1546 2.0989
25 6 9.5853 4.9292 1.8779
26 6 9.3569 3.4706 2.3142
27 1 -0.5399 0.9354 -0.0004
28 1 -0.5400 -0.9352 -0.0004
29 1 1.8500 -0.9353 0.0004
30 1 1.3856 2.1161 0.2660
31 1 2.4756 1.4867 -0.9926
32 1 3.2690 3.2695 1.3191
33 1 4.3589 2.6394 0.0607
34 1 5.7844 4.0961 1.8235
35 1 6.0447 4.7633 4.4613
36 1 6.3728 3.2737 5.4468
37 1 9.1488 2.3517 4.9277
38 1 11.0787 0.7877 7.1540
39 1 7.4725 4.9583 1.2144
40 1 7.8436 6.1080 2.5721
41 1 10.2160 5.4956 2.5630
42 1 9.8932 5.0298 0.8371
43 1 10.1432 3.0787 2.9595
44 1 9.1103 2.7997 1.4913
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001202633043.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:11:56
Heat of formation + Delta-G solvation = -1.132520 kcal
Electronic energy + Delta-G solvation = -23616.637692 eV
Core-core repulsion = 20150.695232 eV
Total energy + Delta-G solvation = -3465.942460 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.173 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-40.58972 -39.19456 -37.72665 -35.03361 -34.11923 -34.03590 -32.39433 -29.84840
-28.43279 -25.88084 -25.52823 -24.27624 -24.16370 -22.52120 -20.63252 -20.35560
-20.10912 -17.93972 -17.42219 -17.03672 -16.73955 -16.55602 -15.76154 -15.32877
-15.13263 -14.87412 -14.49055 -14.18754 -13.82960 -13.39471 -13.05634 -12.68718
-12.65967 -12.39729 -12.30820 -12.13825 -11.91561 -11.61369 -11.38396 -11.27953
-10.88773 -10.81971 -10.72570 -10.25026 -10.19452 -10.05198 -9.82999 -9.76787
-9.64391 -9.53656 -9.40925 -8.85842 -8.59841 -6.99485 -5.78007 -3.08050
1.81465 2.72911 2.91229 3.44095 3.48533 3.49818 3.91878 4.51871
4.60789 4.75286 4.77644 4.80686 4.88402 4.91257 4.94179 4.99708
5.05630 5.17226 5.19685 5.34575 5.45554 5.53872 5.65402 5.80015
5.93110 5.95418 6.01500 6.05294 6.11696 6.23089 6.24886 6.30161
6.43365 6.57778 6.63849 6.71267 6.77537 6.84552 6.88159 7.09791
7.67003 7.70061 8.38712 8.39972 9.50934 10.07011 10.41490 11.43877
Molecular weight = 294.17amu
Principal moments of inertia in cm(-1)
A = 0.019737 B = 0.003138 C = 0.002845
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1418.322138 B = 8920.202061 C = 9838.583104
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C -0.148 4.148
3 C 0.086 3.914
4 O -0.358 6.358
5 C 0.044 3.956
6 C 0.508 3.492
7 O -0.516 6.516
8 N -0.714 5.714
9 C 0.140 3.860
10 H 0.114 0.886
11 C -0.182 4.182
12 C 0.198 3.802
13 H 0.068 0.932
14 N -0.700 5.700
15 C -0.246 4.246
16 H 0.072 0.928
17 C -0.009 4.009
18 N -0.929 5.929
19 Si 0.908 3.092
20 H -0.285 1.285
21 H -0.291 1.291
22 H -0.286 1.286
23 C -0.124 4.124
24 C -0.115 4.115
25 C -0.133 4.133
26 C -0.126 4.126
27 H 0.097 0.903
28 H 0.105 0.895
29 H 0.119 0.881
30 H 0.056 0.944
31 H 0.061 0.939
32 H 0.078 0.922
33 H 0.078 0.922
34 H 0.395 0.605
35 H 0.069 0.931
36 H 0.072 0.928
37 H 0.387 0.613
38 H 0.257 0.743
39 H 0.074 0.926
40 H 0.067 0.933
41 H 0.081 0.919
42 H 0.058 0.942
43 H 0.083 0.917
44 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.583 6.465 -17.115 23.397
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C -0.167 4.167
3 C 0.010 3.990
4 O -0.276 6.276
5 C -0.036 4.036
6 C 0.292 3.708
7 O -0.390 6.390
8 N -0.367 5.367
9 C 0.037 3.963
10 H 0.132 0.868
11 C -0.225 4.225
12 C 0.084 3.916
13 H 0.086 0.914
14 N -0.338 5.338
15 C -0.376 4.376
16 H 0.090 0.910
17 C -0.206 4.206
18 N -0.576 5.576
19 Si 0.739 3.261
20 H -0.212 1.212
21 H -0.217 1.217
22 H -0.212 1.212
23 C -0.127 4.127
24 C -0.153 4.153
25 C -0.171 4.171
26 C -0.163 4.163
27 H 0.115 0.885
28 H 0.123 0.877
29 H 0.137 0.863
30 H 0.074 0.926
31 H 0.078 0.922
32 H 0.096 0.904
33 H 0.096 0.904
34 H 0.230 0.770
35 H 0.087 0.913
36 H 0.091 0.909
37 H 0.222 0.778
38 H 0.067 0.933
39 H 0.092 0.908
40 H 0.086 0.914
41 H 0.100 0.900
42 H 0.077 0.923
43 H 0.101 0.899
44 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -14.375 5.550 -16.361 22.475
hybrid contribution 0.239 0.495 0.309 0.630
sum -14.136 6.045 -16.052 22.227
Atomic orbital electron populations
1.23829 0.95491 1.02282 1.00236 1.22737 0.95629 0.98274 1.00014
1.21614 0.88851 0.96193 0.92377 1.88076 1.44205 1.35010 1.60312
1.22243 0.93384 0.89159 0.98836 1.20200 0.82583 0.84388 0.83611
1.90769 1.71789 1.26948 1.49505 1.45950 1.31817 1.16537 1.42359
1.22434 0.85749 1.00606 0.87554 0.86771 1.24306 1.01303 0.99514
0.97353 1.20622 0.89386 0.94240 0.87354 0.91361 1.42103 1.57060
1.13240 1.21369 1.19195 1.24318 0.98313 0.95821 0.91046 1.24767
1.00764 0.96040 0.99029 1.69653 1.43423 1.05123 1.39421 0.86256
0.78970 0.77030 0.83821 1.21207 1.21689 1.21235 1.23627 0.94742
0.96401 0.97900 1.22527 0.97239 0.97525 0.98009 1.22735 0.95930
0.97905 1.00484 1.22632 0.98560 0.95855 0.99280 0.88457 0.87709
0.86342 0.92624 0.92153 0.90423 0.90443 0.77049 0.91252 0.90899
0.77826 0.93304 0.90778 0.91416 0.90036 0.92307 0.89874 0.91106
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.31 14.31 29.01 0.42 -0.90 16
2 C -0.15 -1.33 9.89 -36.02 -0.36 -1.69 16
3 C 0.09 0.77 6.35 36.01 0.23 1.00 16
4 O -0.36 -4.68 9.86 -55.14 -0.54 -5.22 16
5 C 0.04 0.46 6.42 36.00 0.23 0.69 16
6 C 0.51 7.62 7.91 -10.99 -0.09 7.53 16
7 O -0.52 -10.65 16.10 -14.36 -0.23 -10.89 16
8 N -0.71 -9.39 5.25 -53.37 -0.28 -9.67 16
9 C 0.14 2.35 4.03 -67.49 -0.27 2.08 16
10 H 0.11 2.35 7.46 -51.93 -0.39 1.97 16
11 C -0.18 -3.23 7.68 -25.75 -0.20 -3.42 16
12 C 0.20 3.81 4.36 -67.48 -0.29 3.51 16
13 H 0.07 1.31 8.10 -51.93 -0.42 0.88 16
14 N -0.70 -17.19 4.85 -52.99 -0.26 -17.45 16
15 C -0.25 -6.71 9.97 -15.06 -0.15 -6.86 16
16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16
17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16
18 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16
19 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16
20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
23 C -0.12 -1.94 0.92 -154.71 -0.14 -2.08 16
24 C -0.12 -1.38 7.15 -26.28 -0.19 -1.57 16
25 C -0.13 -1.76 8.08 -25.75 -0.21 -1.97 16
26 C -0.13 -2.00 7.62 -26.28 -0.20 -2.20 16
27 H 0.10 0.58 7.90 -52.49 -0.41 0.17 16
28 H 0.10 0.64 8.06 -52.49 -0.42 0.21 16
29 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16
30 H 0.06 0.40 7.86 -51.93 -0.41 0.00 16
31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16
32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16
33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16
34 H 0.40 3.78 7.04 -40.82 -0.29 3.49 16
35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
36 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16
37 H 0.39 10.27 7.62 -40.82 -0.31 9.96 16
38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16
39 H 0.07 0.72 7.03 -51.92 -0.36 0.36 16
40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
41 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16
42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
43 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16
44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
LS Contribution 366.31 15.07 5.52 5.52
Total: -1.00 -33.58 366.31 -8.59 -42.17
By element:
Atomic # 1 Polarization: 18.98 SS G_CDS: -7.18 Total: 11.80 kcal
Atomic # 6 Polarization: -4.93 SS G_CDS: -1.32 Total: -6.24 kcal
Atomic # 7 Polarization: -54.62 SS G_CDS: 0.19 Total: -54.43 kcal
Atomic # 8 Polarization: -15.33 SS G_CDS: -0.77 Total: -16.11 kcal
Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -33.58 -8.59 -42.17 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001202633043.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.040 kcal
(2) G-P(sol) polarization free energy of solvation -33.580 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.460 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.173 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.133 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds