Wall clock time and date at job start Tue Mar 31 2020 03:11:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31003 * 1
3 3 C 1.50704 * 120.00215 * 2 1
4 4 O 1.42901 * 109.47181 * 134.99661 * 3 2 1
5 5 C 1.42900 * 113.99780 * 179.97438 * 4 3 2
6 6 C 1.50699 * 109.47036 * 180.02562 * 5 4 3
7 7 O 1.21288 * 119.99883 * 359.97438 * 6 5 4
8 8 N 1.34778 * 120.00217 * 179.97438 * 6 5 4
9 9 C 1.46495 * 120.00084 * 179.97438 * 8 6 5
10 10 H 1.09007 * 112.88436 * 23.65992 * 9 8 6
11 11 C 1.53949 * 113.66570 * 252.18858 * 9 8 6
12 12 C 1.53951 * 87.29734 * 220.79629 * 11 9 8
13 13 H 1.08996 * 113.66175 * 139.20610 * 12 11 9
14 14 N 1.46504 * 113.66187 * 270.26207 * 12 11 9
15 15 C 1.36933 * 119.99676 * 252.18514 * 14 12 11
16 16 H 1.07997 * 120.00318 * 0.02562 * 15 14 12
17 17 C 1.38809 * 119.99863 * 179.97438 * 15 14 12
18 18 N 1.31618 * 120.00271 * 0.02562 * 17 15 14
19 19 Si 1.86808 * 120.00245 * 180.02562 * 17 15 14
20 20 H 1.48502 * 109.46787 * 60.00169 * 19 17 15
21 21 H 1.48494 * 109.47063 * 180.02562 * 19 17 15
22 22 H 1.48502 * 109.46983 * 300.00292 * 19 17 15
23 23 C 1.52903 * 113.66201 * 155.00243 * 9 8 6
24 24 C 1.52910 * 121.13886 * 13.65415 * 23 9 8
25 25 C 1.53950 * 86.78717 * 209.38108 * 24 23 9
26 26 C 1.52917 * 121.14033 * 265.09502 * 23 9 8
27 27 H 1.08002 * 119.99430 * 0.02562 * 1 2 3
28 28 H 1.07990 * 120.00005 * 179.97438 * 1 2 3
29 29 H 1.08000 * 119.99842 * 179.97438 * 2 1 3
30 30 H 1.09000 * 109.46984 * 14.99904 * 3 2 1
31 31 H 1.08999 * 109.46713 * 254.99799 * 3 2 1
32 32 H 1.08992 * 109.46960 * 60.00020 * 5 4 3
33 33 H 1.09002 * 109.46934 * 299.99708 * 5 4 3
34 34 H 0.96996 * 119.99871 * 0.02562 * 8 6 5
35 35 H 1.09000 * 113.57567 * 335.40192 * 11 9 8
36 36 H 1.08998 * 113.57943 * 106.11270 * 11 9 8
37 37 H 0.96995 * 120.00051 * 72.18674 * 14 12 11
38 38 H 0.96999 * 120.00601 * 179.97438 * 18 17 15
39 39 H 1.09007 * 113.66009 * 323.85167 * 24 23 9
40 40 H 1.09002 * 113.66292 * 94.90250 * 24 23 9
41 41 H 1.09001 * 113.57502 * 270.13001 * 25 24 23
42 42 H 1.08998 * 113.58006 * 139.33297 * 25 24 23
43 43 H 1.09001 * 113.65915 * 265.09197 * 26 23 9
44 44 H 1.08997 * 113.66386 * 36.04920 * 26 23 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0636 1.3051 0.0000
4 8 3.1268 1.2413 0.9527
5 6 3.9085 2.4349 1.0321
6 6 4.9947 2.2564 2.0613
7 8 5.0897 1.2103 2.6675
8 7 5.8606 3.2594 2.3081
9 6 6.9162 3.0861 3.3090
10 1 7.1686 2.0398 3.4821
11 6 6.6803 3.8889 4.6012
12 6 8.1852 4.2130 4.5881
13 1 8.4135 5.2421 4.8652
14 7 9.0040 3.2329 5.3061
15 6 9.5648 3.5611 6.5114
16 1 9.4033 4.5422 6.9330
17 6 10.3401 2.6324 7.1920
18 7 10.5366 1.4365 6.6786
19 14 11.1047 3.0798 8.8367
20 1 10.0320 3.4284 9.8027
21 1 11.8799 1.9233 9.3531
22 1 12.0103 4.2436 8.6614
23 6 8.1342 3.9810 3.0776
24 6 8.0786 5.1546 2.0989
25 6 9.5853 4.9292 1.8779
26 6 9.3569 3.4706 2.3142
27 1 -0.5399 0.9354 -0.0004
28 1 -0.5400 -0.9352 -0.0004
29 1 1.8500 -0.9353 0.0004
30 1 1.3856 2.1161 0.2660
31 1 2.4756 1.4867 -0.9926
32 1 3.2690 3.2695 1.3191
33 1 4.3589 2.6394 0.0607
34 1 5.7844 4.0961 1.8235
35 1 6.0447 4.7633 4.4613
36 1 6.3728 3.2737 5.4468
37 1 9.1488 2.3517 4.9277
38 1 11.0787 0.7877 7.1540
39 1 7.4725 4.9583 1.2144
40 1 7.8436 6.1080 2.5721
41 1 10.2160 5.4956 2.5630
42 1 9.8932 5.0298 0.8371
43 1 10.1432 3.0787 2.9595
44 1 9.1103 2.7997 1.4913
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001202633043.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:11:56
Heat of formation + Delta-G solvation = -24.336087 kcal
Electronic energy + Delta-G solvation = -23617.643874 eV
Core-core repulsion = 20150.695232 eV
Total energy + Delta-G solvation = -3466.948642 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.173 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-41.90557 -40.32446 -38.64380 -36.48477 -35.63307 -34.76159 -34.05781 -31.68478
-29.41106 -26.74182 -26.70385 -25.97271 -25.45635 -24.09252 -21.71828 -21.67134
-20.86798 -19.53029 -18.86027 -18.25233 -17.85779 -17.33868 -16.94349 -16.65640
-16.26611 -16.22191 -15.78793 -15.56061 -15.14701 -14.79068 -14.31301 -14.17210
-13.84535 -13.53982 -13.28458 -13.20873 -13.09633 -13.05324 -12.79166 -12.66125
-12.61018 -12.23188 -12.00093 -11.88099 -11.78657 -11.31305 -11.22752 -10.97080
-10.90739 -10.78900 -10.67430 -10.25053 -9.87867 -9.01956 -7.95313 -5.24809
1.19883 1.45769 1.49449 1.55389 1.58959 1.94726 2.54206 3.10909
3.35923 3.43154 3.56366 3.73117 3.81965 3.97517 4.04568 4.07512
4.17443 4.19854 4.23569 4.25486 4.32012 4.47556 4.58796 4.61771
4.66425 4.80304 4.86470 4.90511 4.98321 5.06153 5.13230 5.16053
5.26111 5.33016 5.44340 5.52380 5.62380 5.65930 5.70144 5.74990
6.12335 6.26190 6.63535 7.31127 7.31195 8.07704 8.29728 9.27960
Molecular weight = 294.17amu
Principal moments of inertia in cm(-1)
A = 0.019737 B = 0.003138 C = 0.002845
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1418.322138 B = 8920.202061 C = 9838.583104
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C -0.180 4.180
3 C 0.084 3.916
4 O -0.402 6.402
5 C 0.051 3.949
6 C 0.500 3.500
7 O -0.586 6.586
8 N -0.693 5.693
9 C 0.146 3.854
10 H 0.064 0.936
11 C -0.171 4.171
12 C 0.178 3.822
13 H 0.075 0.925
14 N -0.716 5.716
15 C -0.241 4.241
16 H 0.081 0.919
17 C -0.078 4.078
18 N -0.972 5.972
19 Si 0.975 3.025
20 H -0.279 1.279
21 H -0.299 1.299
22 H -0.273 1.273
23 C -0.113 4.113
24 C -0.092 4.092
25 C -0.125 4.125
26 C -0.137 4.137
27 H 0.115 0.885
28 H 0.112 0.888
29 H 0.102 0.898
30 H 0.077 0.923
31 H 0.080 0.920
32 H 0.115 0.885
33 H 0.116 0.884
34 H 0.419 0.581
35 H 0.108 0.892
36 H 0.033 0.967
37 H 0.371 0.629
38 H 0.250 0.750
39 H 0.110 0.890
40 H 0.088 0.912
41 H 0.068 0.932
42 H 0.086 0.914
43 H 0.038 0.962
44 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.481 10.014 -19.384 27.343
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.199 4.199
3 C 0.009 3.991
4 O -0.322 6.322
5 C -0.028 4.028
6 C 0.287 3.713
7 O -0.465 6.465
8 N -0.346 5.346
9 C 0.041 3.959
10 H 0.082 0.918
11 C -0.213 4.213
12 C 0.067 3.933
13 H 0.093 0.907
14 N -0.353 5.353
15 C -0.373 4.373
16 H 0.099 0.901
17 C -0.270 4.270
18 N -0.622 5.622
19 Si 0.804 3.196
20 H -0.205 1.205
21 H -0.225 1.225
22 H -0.199 1.199
23 C -0.115 4.115
24 C -0.130 4.130
25 C -0.162 4.162
26 C -0.174 4.174
27 H 0.133 0.867
28 H 0.131 0.869
29 H 0.120 0.880
30 H 0.095 0.905
31 H 0.098 0.902
32 H 0.133 0.867
33 H 0.134 0.866
34 H 0.258 0.742
35 H 0.126 0.874
36 H 0.052 0.948
37 H 0.203 0.797
38 H 0.059 0.941
39 H 0.128 0.872
40 H 0.107 0.893
41 H 0.087 0.913
42 H 0.104 0.896
43 H 0.057 0.943
44 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -16.315 9.210 -18.683 26.459
hybrid contribution 0.739 -0.616 0.965 1.362
sum -15.576 8.594 -17.719 25.108
Atomic orbital electron populations
1.24054 0.94932 1.03540 0.97770 1.22821 0.96446 0.98203 1.02389
1.21807 0.88288 0.96509 0.92513 1.88028 1.45618 1.36645 1.61874
1.22352 0.92364 0.89402 0.98720 1.21220 0.83148 0.83291 0.83607
1.90749 1.73656 1.29784 1.52317 1.45650 1.30300 1.17407 1.41265
1.21906 0.87559 0.98008 0.88459 0.91826 1.24184 1.00350 1.00303
0.96453 1.20916 0.89480 0.93157 0.89758 0.90653 1.42261 1.58022
1.13686 1.21318 1.19648 1.22868 0.98311 0.96467 0.90072 1.25618
1.02367 0.96168 1.02834 1.69838 1.45029 1.06337 1.40998 0.85184
0.78136 0.76620 0.79650 1.20492 1.22536 1.19912 1.23459 0.93839
0.98188 0.96009 1.22572 0.96532 0.96226 0.97643 1.22687 0.97088
0.94742 1.01710 1.22683 0.97530 0.98170 0.99066 0.86702 0.86929
0.88036 0.90534 0.90245 0.86703 0.86603 0.74173 0.87417 0.94821
0.79703 0.94116 0.87154 0.89311 0.91289 0.89572 0.94309 0.90180
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.11 14.31 67.78 0.97 -1.14 16
2 C -0.18 -3.09 9.89 25.64 0.25 -2.84 16
3 C 0.08 1.30 6.35 71.24 0.45 1.76 16
4 O -0.40 -9.95 9.86 -129.94 -1.28 -11.23 16
5 C 0.05 0.90 6.42 71.24 0.46 1.35 16
6 C 0.50 14.47 7.91 87.66 0.69 15.16 16
7 O -0.59 -25.26 16.10 15.98 0.26 -25.00 16
8 N -0.69 -16.63 5.25 -441.16 -2.32 -18.94 16
9 C 0.15 4.91 4.03 45.28 0.18 5.09 16
10 H 0.06 2.84 7.46 -2.38 -0.02 2.82 16
11 C -0.17 -6.02 7.68 31.23 0.24 -5.78 16
12 C 0.18 6.88 4.36 45.28 0.20 7.08 16
13 H 0.08 2.79 8.10 -2.39 -0.02 2.77 16
14 N -0.72 -36.86 4.85 -321.57 -1.56 -38.42 16
15 C -0.24 -13.55 9.97 84.03 0.84 -12.71 16
16 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16
17 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16
18 N -0.97 -61.71 13.06 21.65 0.28 -61.43 16
19 Si 0.98 47.10 29.55 68.60 2.03 49.12 16
20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16
21 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16
22 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16
23 C -0.11 -3.39 0.92 -52.31 -0.05 -3.44 16
24 C -0.09 -1.78 7.15 30.88 0.22 -1.56 16
25 C -0.12 -2.94 8.08 31.23 0.25 -2.69 16
26 C -0.14 -4.34 7.62 30.89 0.24 -4.11 16
27 H 0.11 1.03 7.90 -2.91 -0.02 1.01 16
28 H 0.11 1.20 8.06 -2.92 -0.02 1.17 16
29 H 0.10 2.00 8.06 -2.91 -0.02 1.98 16
30 H 0.08 0.83 7.86 -2.39 -0.02 0.81 16
31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16
32 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16
33 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16
34 H 0.42 5.95 7.04 -92.71 -0.65 5.29 16
35 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16
36 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16
37 H 0.37 21.20 7.62 -92.71 -0.71 20.49 16
38 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16
39 H 0.11 1.42 7.03 -2.38 -0.02 1.40 16
40 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16
41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16
42 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16
43 H 0.04 1.57 7.58 -2.39 -0.02 1.55 16
44 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16
Total: -1.00 -81.35 366.31 2.46 -78.90
By element:
Atomic # 1 Polarization: 35.28 SS G_CDS: -0.37 Total: 34.92 kcal
Atomic # 6 Polarization: -13.33 SS G_CDS: 5.41 Total: -7.92 kcal
Atomic # 7 Polarization: -115.20 SS G_CDS: -3.59 Total: -118.79 kcal
Atomic # 8 Polarization: -35.20 SS G_CDS: -1.02 Total: -36.23 kcal
Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal
Total: -81.35 2.46 -78.90 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001202633043.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.563 kcal
(2) G-P(sol) polarization free energy of solvation -81.354 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.791 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.899 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.336 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds