Wall clock time and date at job start Tue Mar 31 2020 03:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46911 * 306.40641 * 3 2 1 5 5 C 1.52998 * 109.46873 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47156 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47203 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99841 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00370 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00280 * 180.02562 * 9 7 6 11 11 H 1.09001 * 110.78109 * 31.76202 * 10 9 7 12 12 C 1.54326 * 110.72058 * 268.52245 * 10 9 7 13 13 N 1.47286 * 107.30568 * 219.45915 * 12 10 9 14 14 C 1.36940 * 125.79201 * 178.93073 * 13 12 10 15 15 H 1.07998 * 120.00050 * 341.50800 * 14 13 12 16 16 C 1.38813 * 119.99845 * 161.51683 * 14 13 12 17 17 N 1.31625 * 119.99502 * 157.60351 * 16 14 13 18 18 Si 1.86792 * 120.00162 * 337.60447 * 16 14 13 19 19 H 1.48498 * 109.47196 * 84.54220 * 18 16 14 20 20 H 1.48510 * 109.47106 * 204.53762 * 18 16 14 21 21 H 1.48492 * 109.47267 * 324.53766 * 18 16 14 22 22 C 1.47426 * 108.56017 * 358.92010 * 13 12 10 23 23 C 1.54905 * 104.92758 * 24.15797 * 22 13 12 24 24 H 1.09003 * 111.00206 * 81.01110 * 23 22 13 25 25 O 1.42894 * 111.00691 * 204.85955 * 23 22 13 26 26 C 1.42899 * 113.99983 * 268.54955 * 25 23 22 27 27 H 4.44652 * 5.63342 * 179.97438 * 4 1 2 28 28 H 1.08994 * 109.46916 * 186.40727 * 3 2 1 29 29 H 1.08999 * 109.46819 * 66.40395 * 3 2 1 30 30 H 1.08994 * 109.47260 * 60.00297 * 4 3 2 31 31 H 1.08997 * 109.47077 * 300.00066 * 4 3 2 32 32 H 1.09001 * 109.47477 * 60.00114 * 5 4 3 33 33 H 1.08997 * 109.47084 * 299.99769 * 5 4 3 34 34 H 1.08994 * 109.46923 * 60.00037 * 6 5 4 35 35 H 1.08997 * 109.47131 * 299.99980 * 6 5 4 36 36 H 0.97004 * 119.99257 * 359.97438 * 9 7 6 37 37 H 1.09004 * 109.87914 * 338.86268 * 12 10 9 38 38 H 1.08995 * 109.88141 * 100.02386 * 12 10 9 39 39 H 0.97002 * 119.99552 * 179.97438 * 17 16 14 40 40 H 1.09001 * 110.36505 * 265.26421 * 22 13 12 41 41 H 1.08996 * 110.36581 * 143.05237 * 22 13 12 42 42 H 1.09004 * 109.47150 * 179.97438 * 26 25 23 43 43 H 1.09004 * 109.47293 * 299.99395 * 26 25 23 44 44 H 1.08996 * 109.47403 * 60.00319 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.8553 1.1610 5 6 4.6864 -0.8541 1.1614 6 6 5.1968 -1.7095 2.3227 7 6 6.7037 -1.7088 2.3227 8 8 7.3099 -1.0851 1.4773 9 7 7.3780 -2.4004 3.2627 10 6 8.8430 -2.3992 3.2630 11 1 9.2290 -1.4532 2.8835 12 6 9.3901 -3.5828 2.4375 13 7 10.5608 -4.1141 3.1561 14 6 11.3224 -5.1833 2.7662 15 1 10.9324 -5.8918 2.0505 16 6 12.5957 -5.3566 3.2911 17 7 13.1521 -6.5495 3.2878 18 14 13.5194 -3.8971 4.0023 19 1 13.1092 -3.6921 5.4147 20 1 14.9800 -4.1596 3.9442 21 1 13.2037 -2.6794 3.2133 22 6 10.7766 -3.3015 4.3671 23 6 9.3918 -2.6849 4.6859 24 1 8.7585 -3.3984 5.2130 25 8 9.5297 -1.4753 5.4340 26 6 9.5051 -1.6620 6.8506 27 1 -1.0499 0.0000 0.0003 28 1 3.0089 1.0220 0.1147 29 1 3.0095 -0.4105 -0.9417 30 1 2.7936 -1.8766 1.0463 31 1 2.7928 -0.4441 2.1027 32 1 5.0489 0.1674 1.2763 33 1 5.0502 -1.2650 0.2197 34 1 4.8343 -2.7310 2.2083 35 1 4.8329 -1.2982 3.2642 36 1 6.8931 -2.8982 3.9395 37 1 8.6275 -4.3567 2.3487 38 1 9.6880 -3.2378 1.4474 39 1 14.0421 -6.6705 3.6542 40 1 11.5060 -2.5155 4.1714 41 1 11.1105 -3.9311 5.1918 42 1 9.6157 -0.6975 7.3462 43 1 8.5564 -2.1134 7.1411 44 1 10.3247 -2.3174 7.1450 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212143362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:12 Heat of formation + Delta-G solvation = -12.557805 kcal Electronic energy + Delta-G solvation = -23342.342955 eV Core-core repulsion = 19875.905057 eV Total energy + Delta-G solvation = -3466.437897 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.93718 -38.49505 -36.46221 -36.12634 -34.15314 -33.39661 -32.00657 -30.31430 -29.10720 -27.83338 -26.37074 -25.44306 -23.85270 -21.67236 -21.26745 -20.46809 -20.02410 -18.34913 -17.44529 -16.86649 -16.56394 -16.22699 -16.05668 -15.08259 -14.97119 -14.64480 -14.52628 -14.30483 -14.12486 -13.68602 -13.39450 -13.09947 -12.89011 -12.79918 -12.23023 -12.11713 -11.94209 -11.85033 -11.51654 -11.48973 -11.29480 -11.19543 -10.90934 -10.72190 -10.49193 -10.46235 -10.37534 -10.08083 -9.80766 -9.53137 -9.35784 -8.92685 -8.65081 -7.12409 -5.99076 -3.30887 2.51324 2.55430 2.74016 3.20018 3.31462 3.47394 3.52075 3.80848 4.05603 4.51283 4.61373 4.66938 4.68694 4.86128 5.04144 5.05509 5.11636 5.17012 5.25676 5.30487 5.35350 5.40951 5.43567 5.49033 5.52977 5.54134 5.67518 5.71439 5.75258 5.80224 5.86948 5.99801 6.13098 6.30449 6.37466 6.47391 6.57760 6.76018 7.32669 7.32788 7.58282 7.63490 8.25640 8.33405 8.76746 9.62910 10.08424 11.16495 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024884 B = 0.002865 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.932962 B = 9769.093317 C =10477.932169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.182 4.182 3 C -0.016 4.016 4 C -0.114 4.114 5 C -0.105 4.105 6 C -0.140 4.140 7 C 0.512 3.488 8 O -0.539 6.539 9 N -0.718 5.718 10 C 0.137 3.863 11 H 0.107 0.893 12 C 0.129 3.871 13 N -0.604 5.604 14 C -0.242 4.242 15 H 0.095 0.905 16 C 0.023 3.977 17 N -0.906 5.906 18 Si 0.881 3.119 19 H -0.286 1.286 20 H -0.300 1.300 21 H -0.274 1.274 22 C 0.095 3.905 23 C 0.068 3.932 24 H 0.077 0.923 25 O -0.379 6.379 26 C 0.031 3.969 27 H 0.215 0.785 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.398 0.602 37 H 0.040 0.960 38 H 0.043 0.957 39 H 0.264 0.736 40 H 0.039 0.961 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.039 0.961 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.056 11.339 2.285 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.182 4.182 3 C -0.053 4.053 4 C -0.152 4.152 5 C -0.143 4.143 6 C -0.180 4.180 7 C 0.299 3.701 8 O -0.415 6.415 9 N -0.369 5.369 10 C 0.032 3.968 11 H 0.124 0.876 12 C 0.002 3.998 13 N -0.333 5.333 14 C -0.369 4.369 15 H 0.113 0.887 16 C -0.176 4.176 17 N -0.549 5.549 18 Si 0.711 3.289 19 H -0.213 1.213 20 H -0.228 1.228 21 H -0.200 1.200 22 C -0.031 4.031 23 C 0.008 3.992 24 H 0.095 0.905 25 O -0.297 6.297 26 C -0.066 4.066 27 H 0.232 0.768 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.232 0.768 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.058 0.942 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -20.390 11.794 1.576 23.608 hybrid contribution 0.253 0.212 1.001 1.053 sum -20.137 12.006 2.577 23.586 Atomic orbital electron populations 1.24904 0.95999 1.01427 1.01252 1.23260 0.94689 1.00111 1.00176 1.18789 0.84423 1.01783 1.00276 1.21560 0.95465 1.00206 0.97929 1.21351 0.93702 1.00888 0.98379 1.21668 0.92043 1.02884 1.01381 1.20686 0.90103 0.78429 0.80929 1.90717 1.70487 1.42992 1.37349 1.45980 1.06948 1.51857 1.32127 1.22069 0.78926 1.01182 0.94604 0.87551 1.21759 0.90372 0.92598 0.95037 1.44666 1.32782 1.34649 1.21199 1.18634 0.95049 0.97935 1.25291 0.88720 1.25006 0.96684 0.96550 0.99329 1.69839 1.16633 1.20279 1.48153 0.87024 0.78814 0.84273 0.78823 1.21322 1.22815 1.19960 1.22362 0.94340 0.94860 0.91510 1.23653 0.97972 0.86147 0.91418 0.90511 1.87894 1.94250 1.30293 1.17230 1.22765 1.00039 1.02156 0.81597 0.76779 0.89384 0.89312 0.91434 0.91539 0.90875 0.90733 0.88823 0.88999 0.76767 0.94157 0.93885 0.92614 0.94327 0.91836 0.89862 0.94203 0.93797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.73 19.25 29.55 0.57 -1.16 16 2 C -0.18 -1.61 13.34 -37.12 -0.50 -2.10 16 3 C -0.02 -0.12 5.70 -29.52 -0.17 -0.29 16 4 C -0.11 -0.80 5.17 -26.73 -0.14 -0.94 16 5 C -0.11 -0.91 4.50 -26.73 -0.12 -1.03 16 6 C -0.14 -1.20 5.70 -27.88 -0.16 -1.36 16 7 C 0.51 6.83 7.83 -10.99 -0.09 6.74 16 8 O -0.54 -9.48 15.63 5.55 0.09 -9.39 16 9 N -0.72 -9.45 5.10 -52.03 -0.27 -9.72 16 10 C 0.14 2.36 3.05 -66.10 -0.20 2.16 16 11 H 0.11 2.05 7.55 -51.93 -0.39 1.66 16 12 C 0.13 2.62 7.01 -2.92 -0.02 2.60 16 13 N -0.60 -14.66 3.22 -169.86 -0.55 -15.21 16 14 C -0.24 -6.86 10.58 -15.06 -0.16 -7.02 16 15 H 0.10 2.83 8.06 -52.49 -0.42 2.40 16 16 C 0.02 0.68 5.43 -17.43 -0.09 0.58 16 17 N -0.91 -27.74 13.97 55.49 0.78 -26.97 16 18 Si 0.88 22.76 24.27 -169.99 -4.13 18.63 16 19 H -0.29 -7.04 6.48 56.52 0.37 -6.68 16 20 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 21 H -0.27 -7.13 6.65 56.52 0.38 -6.75 16 22 C 0.10 2.09 4.42 -2.53 -0.01 2.08 16 23 C 0.07 1.15 3.12 -24.58 -0.08 1.08 16 24 H 0.08 1.15 7.77 -51.93 -0.40 0.75 16 25 O -0.38 -6.17 10.51 -35.23 -0.37 -6.54 16 26 C 0.03 0.38 10.89 101.05 1.10 1.49 16 27 H 0.22 0.98 7.80 -54.10 -0.42 0.56 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.07 0.73 8.10 -51.93 -0.42 0.30 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.40 4.00 8.56 -40.82 -0.35 3.65 16 37 H 0.04 0.79 8.03 -51.93 -0.42 0.37 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.04 0.92 5.57 -51.93 -0.29 0.63 16 41 H 0.06 1.45 6.63 -51.93 -0.34 1.10 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.04 0.41 8.11 -51.93 -0.42 -0.01 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 364.82 15.07 5.50 5.50 Total: -1.00 -34.47 364.82 -6.31 -40.79 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.30 Total: 0.07 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -0.06 Total: 2.84 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.04 Total: -51.89 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.28 Total: -15.94 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.13 Total: 18.63 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.47 -6.31 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212143362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.229 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds