Wall clock time and date at job start Tue Mar 31 2020 02:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 120.00326 * 2 1 4 4 C 1.50702 * 120.00116 * 179.97438 * 2 1 3 5 5 N 1.46505 * 109.47282 * 94.99894 * 4 2 1 6 6 C 1.46264 * 118.81120 * 90.00246 * 5 4 2 7 7 C 1.52038 * 109.96499 * 162.90502 * 6 5 4 8 8 C 1.54313 * 110.67196 * 170.17138 * 7 6 5 9 9 C 1.54467 * 102.94607 * 152.96657 * 8 7 6 10 10 N 1.47504 * 107.26204 * 338.45207 * 9 8 7 11 11 C 1.46899 * 110.99964 * 236.78159 * 10 9 8 12 12 C 1.50703 * 109.47036 * 69.87766 * 11 10 9 13 13 H 1.07994 * 120.00052 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99839 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99917 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00048 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46919 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47064 * 119.99467 * 16 14 12 19 19 H 1.48498 * 109.46900 * 239.99665 * 16 14 12 20 20 C 1.48000 * 108.60316 * 359.07624 * 10 9 8 21 21 O 1.42098 * 110.97080 * 46.85027 * 7 6 5 22 22 C 1.43063 * 113.33331 * 294.28089 * 21 7 6 23 23 C 1.33838 * 118.81103 * 270.02380 * 5 4 2 24 24 O 1.21280 * 118.62525 * 2.73924 * 23 5 4 25 25 H 1.08003 * 120.00298 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99869 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46689 * 269.99987 * 3 2 1 28 28 H 1.08995 * 109.47083 * 29.99563 * 3 2 1 29 29 H 1.08997 * 109.47526 * 150.00199 * 3 2 1 30 30 H 1.08998 * 109.46743 * 335.00056 * 4 2 1 31 31 H 1.08997 * 109.47653 * 215.00380 * 4 2 1 32 32 H 1.09002 * 109.39019 * 42.75289 * 6 5 4 33 33 H 1.09002 * 109.39348 * 283.05385 * 6 5 4 34 34 H 1.08997 * 110.72255 * 34.60044 * 8 7 6 35 35 H 1.09002 * 110.71432 * 271.33036 * 8 7 6 36 36 H 1.08999 * 109.88095 * 97.86832 * 9 8 7 37 37 H 1.09002 * 109.87896 * 219.03757 * 9 8 7 38 38 H 1.09005 * 109.46583 * 189.87461 * 11 10 9 39 39 H 1.08995 * 109.46959 * 309.87217 * 11 10 9 40 40 H 0.97005 * 120.00172 * 179.97438 * 15 14 12 41 41 H 1.09002 * 110.38209 * 142.06030 * 20 10 9 42 42 H 1.08998 * 110.38085 * 264.42477 * 20 10 9 43 43 H 1.09001 * 109.37507 * 287.88766 * 22 21 7 44 44 H 1.08995 * 109.32510 * 168.12623 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4119 -1.6685 -1.3752 6 6 3.6852 -1.2049 -1.9258 7 6 4.0413 -2.0142 -3.1627 8 6 5.2454 -1.3868 -3.8961 9 6 5.8832 -2.5974 -4.6127 10 7 5.4372 -3.8111 -3.9028 11 6 6.5853 -4.5985 -3.4339 12 6 7.2762 -3.8621 -2.3152 13 1 6.9003 -2.9048 -1.9858 14 6 8.3888 -4.4102 -1.7130 15 7 8.8468 -5.5758 -2.1145 16 14 9.2457 -3.4972 -0.3267 17 1 8.5392 -2.2172 -0.0661 18 1 9.2276 -4.3320 0.9013 19 1 10.6515 -3.2163 -0.7138 20 6 4.5743 -3.4057 -2.7709 21 8 2.9253 -2.1277 -4.0349 22 6 1.8465 -2.8853 -3.4790 23 6 1.5534 -2.4123 -2.0831 24 8 0.4942 -2.7169 -1.5769 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 2.2452 1.6197 -1.0277 28 1 1.4745 2.0648 0.5137 29 1 3.0159 1.1748 0.5138 30 1 1.4385 -2.0852 0.4352 31 1 2.9741 -1.1987 0.5900 32 1 4.4683 -1.3249 -1.1771 33 1 3.6015 -0.1518 -2.1942 34 1 5.9444 -0.9477 -3.1844 35 1 4.9113 -0.6427 -4.6192 36 1 5.5507 -2.6314 -5.6502 37 1 6.9698 -2.5221 -4.5717 38 1 6.2384 -5.5664 -3.0721 39 1 7.2841 -4.7474 -4.2570 40 1 9.6298 -5.9612 -1.6910 41 1 3.7495 -4.1083 -2.6517 42 1 5.1574 -3.3440 -1.8521 43 1 2.1207 -3.9399 -3.4536 44 1 0.9589 -2.7569 -4.0984 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:24 Heat of formation + Delta-G solvation = -41.831365 kcal Electronic energy + Delta-G solvation = -25302.842738 eV Core-core repulsion = 21835.135444 eV Total energy + Delta-G solvation = -3467.707294 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.02661 -38.82582 -36.60179 -36.35646 -34.18414 -32.95732 -31.17249 -28.99534 -28.27894 -27.46599 -26.89847 -25.75950 -25.04033 -22.72562 -21.09242 -20.04487 -18.92089 -18.29427 -17.53530 -16.75417 -16.54514 -15.94557 -15.66065 -15.15268 -14.70903 -14.57011 -14.29434 -14.02542 -13.73313 -13.68529 -13.16431 -13.12075 -12.91820 -12.54114 -12.49155 -12.04123 -11.85417 -11.77705 -11.48572 -11.31696 -11.24780 -10.97456 -10.94126 -10.77752 -10.57598 -10.24272 -10.05669 -9.99971 -9.57905 -9.42966 -9.04645 -8.72862 -8.52681 -7.28609 -6.12455 -4.22356 1.96894 2.56319 3.04189 3.18067 3.26486 3.27407 3.75323 4.30148 4.31192 4.66594 4.71705 4.79832 4.83233 5.03713 5.18295 5.19926 5.25980 5.30490 5.41592 5.44268 5.47447 5.52649 5.65420 5.67813 5.70117 5.79088 5.85137 5.95538 6.05252 6.29207 6.30405 6.48183 6.50628 6.55405 6.65592 6.72829 7.09743 7.12564 7.41249 7.44333 7.80209 7.93362 8.07305 8.12988 8.19332 8.87906 9.44486 10.92728 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.005080 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.067069 B = 5510.987610 C = 6315.567332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.152 4.152 3 C -0.116 4.116 4 C 0.144 3.856 5 N -0.594 5.594 6 C 0.099 3.901 7 C 0.089 3.911 8 C -0.117 4.117 9 C 0.054 3.946 10 N -0.528 5.528 11 C 0.179 3.821 12 C -0.551 4.551 13 H 0.059 0.941 14 C 0.066 3.934 15 N -0.887 5.887 16 Si 0.887 3.113 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.022 3.978 21 O -0.348 6.348 22 C 0.050 3.950 23 C 0.492 3.508 24 O -0.548 6.548 25 H 0.105 0.895 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.031 0.969 39 H 0.032 0.968 40 H 0.263 0.737 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.383 11.667 1.286 16.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.172 4.172 4 C 0.022 3.978 5 N -0.326 5.326 6 C -0.024 4.024 7 C 0.048 3.952 8 C -0.156 4.156 9 C -0.074 4.074 10 N -0.251 5.251 11 C 0.053 3.947 12 C -0.590 4.590 13 H 0.077 0.923 14 C -0.137 4.137 15 N -0.525 5.525 16 Si 0.715 3.285 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.106 4.106 21 O -0.267 6.267 22 C -0.029 4.029 23 C 0.280 3.720 24 O -0.427 6.427 25 H 0.124 0.876 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.114 0.886 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.031 11.097 1.025 16.400 hybrid contribution 1.162 0.847 1.671 2.204 sum -10.869 11.945 2.695 16.373 Atomic orbital electron populations 1.23859 0.95370 1.02084 0.99156 1.22028 0.95762 0.95820 1.01754 1.20841 1.00031 0.94414 1.01955 1.20554 0.99956 0.94412 0.82836 1.47536 1.19484 1.51626 1.13966 1.22031 0.85231 0.98845 0.96301 1.22337 0.87310 0.96618 0.88920 1.22638 0.93938 0.99133 0.99857 1.22659 0.99456 0.87805 0.97475 1.63972 1.20470 1.18016 1.22670 1.19954 0.86625 0.93358 0.94757 1.21753 1.12493 1.05671 1.19093 0.92292 1.24975 0.96973 0.94802 0.96939 1.69950 1.24023 1.16844 1.41679 0.86627 0.79718 0.79853 0.82327 1.19857 1.20917 1.20866 1.23543 0.97267 0.92760 0.97011 1.87967 1.24560 1.72983 1.41152 1.22762 0.91901 0.97886 0.90376 1.21076 0.83747 0.77875 0.89257 1.90680 1.24002 1.57206 1.70823 0.87644 0.88775 0.91700 0.92007 0.91867 0.89090 0.89839 0.89248 0.90996 0.89760 0.90417 0.91952 0.91643 0.95105 0.94969 0.92747 0.91810 0.89840 0.88587 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 13.73 29.02 0.40 -1.49 16 2 C -0.15 -1.71 5.63 -101.06 -0.57 -2.28 16 3 C -0.12 -1.06 10.03 36.01 0.36 -0.70 16 4 C 0.14 1.77 5.44 -5.19 -0.03 1.74 16 5 N -0.59 -8.14 2.81 -176.28 -0.50 -8.64 16 6 C 0.10 1.30 5.39 -4.66 -0.03 1.28 16 7 C 0.09 1.35 0.82 -89.86 -0.07 1.28 16 8 C -0.12 -1.75 6.11 -25.27 -0.15 -1.90 16 9 C 0.05 0.98 6.46 -2.72 -0.02 0.96 16 10 N -0.53 -10.87 5.42 -232.96 -1.26 -12.14 16 11 C 0.18 4.42 5.04 -4.98 -0.03 4.39 16 12 C -0.55 -14.07 7.18 -34.44 -0.25 -14.31 16 13 H 0.06 1.44 6.45 -52.49 -0.34 1.11 16 14 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 16 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.02 0.41 5.18 -2.66 -0.01 0.40 16 21 O -0.35 -5.35 10.43 -35.23 -0.37 -5.72 16 22 C 0.05 0.70 6.37 35.80 0.23 0.93 16 23 C 0.49 7.49 7.44 -11.61 -0.09 7.40 16 24 O -0.55 -9.48 15.70 5.56 0.09 -9.39 16 25 H 0.11 1.34 7.48 -52.48 -0.39 0.95 16 26 H 0.09 0.91 8.04 -52.49 -0.42 0.49 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.50 8.06 -51.93 -0.42 0.08 16 29 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.09 1.21 7.15 -51.93 -0.37 0.84 16 31 H 0.08 0.89 7.91 -51.93 -0.41 0.48 16 32 H 0.09 1.15 7.70 -51.93 -0.40 0.75 16 33 H 0.07 0.85 8.13 -51.93 -0.42 0.42 16 34 H 0.08 1.22 8.01 -51.93 -0.42 0.80 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.28 7.21 -51.93 -0.37 0.90 16 38 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.03 0.85 8.04 -51.93 -0.42 0.44 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.06 1.17 5.96 -51.93 -0.31 0.86 16 42 H 0.08 1.70 5.26 -51.93 -0.27 1.43 16 43 H 0.10 1.37 6.64 -51.93 -0.34 1.02 16 44 H 0.13 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 347.88 15.07 5.24 5.24 Total: -1.00 -29.53 347.88 -8.41 -37.94 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.98 Total: 2.54 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -0.35 Total: -0.63 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -1.02 Total: -45.20 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.28 Total: -15.11 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.53 -8.41 -37.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.893 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds