Wall clock time and date at job start Tue Mar 31 2020 02:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 120.00326 * 2 1 4 4 C 1.50702 * 120.00116 * 179.97438 * 2 1 3 5 5 N 1.46505 * 109.47282 * 94.99894 * 4 2 1 6 6 C 1.46264 * 118.81120 * 90.00246 * 5 4 2 7 7 C 1.52038 * 109.96499 * 162.90502 * 6 5 4 8 8 C 1.54313 * 110.67196 * 170.17138 * 7 6 5 9 9 C 1.54467 * 102.94607 * 152.96657 * 8 7 6 10 10 N 1.47504 * 107.26204 * 338.45207 * 9 8 7 11 11 C 1.46899 * 110.99964 * 236.78159 * 10 9 8 12 12 C 1.50703 * 109.47036 * 69.87766 * 11 10 9 13 13 H 1.07994 * 120.00052 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99839 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99917 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00048 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46919 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47064 * 119.99467 * 16 14 12 19 19 H 1.48498 * 109.46900 * 239.99665 * 16 14 12 20 20 C 1.48000 * 108.60316 * 359.07624 * 10 9 8 21 21 O 1.42098 * 110.97080 * 46.85027 * 7 6 5 22 22 C 1.43063 * 113.33331 * 294.28089 * 21 7 6 23 23 C 1.33838 * 118.81103 * 270.02380 * 5 4 2 24 24 O 1.21280 * 118.62525 * 2.73924 * 23 5 4 25 25 H 1.08003 * 120.00298 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99869 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46689 * 269.99987 * 3 2 1 28 28 H 1.08995 * 109.47083 * 29.99563 * 3 2 1 29 29 H 1.08997 * 109.47526 * 150.00199 * 3 2 1 30 30 H 1.08998 * 109.46743 * 335.00056 * 4 2 1 31 31 H 1.08997 * 109.47653 * 215.00380 * 4 2 1 32 32 H 1.09002 * 109.39019 * 42.75289 * 6 5 4 33 33 H 1.09002 * 109.39348 * 283.05385 * 6 5 4 34 34 H 1.08997 * 110.72255 * 34.60044 * 8 7 6 35 35 H 1.09002 * 110.71432 * 271.33036 * 8 7 6 36 36 H 1.08999 * 109.88095 * 97.86832 * 9 8 7 37 37 H 1.09002 * 109.87896 * 219.03757 * 9 8 7 38 38 H 1.09005 * 109.46583 * 189.87461 * 11 10 9 39 39 H 1.08995 * 109.46959 * 309.87217 * 11 10 9 40 40 H 0.97005 * 120.00172 * 179.97438 * 15 14 12 41 41 H 1.09002 * 110.38209 * 142.06030 * 20 10 9 42 42 H 1.08998 * 110.38085 * 264.42477 * 20 10 9 43 43 H 1.09001 * 109.37507 * 287.88766 * 22 21 7 44 44 H 1.08995 * 109.32510 * 168.12623 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4119 -1.6685 -1.3752 6 6 3.6852 -1.2049 -1.9258 7 6 4.0413 -2.0142 -3.1627 8 6 5.2454 -1.3868 -3.8961 9 6 5.8832 -2.5974 -4.6127 10 7 5.4372 -3.8111 -3.9028 11 6 6.5853 -4.5985 -3.4339 12 6 7.2762 -3.8621 -2.3152 13 1 6.9003 -2.9048 -1.9858 14 6 8.3888 -4.4102 -1.7130 15 7 8.8468 -5.5758 -2.1145 16 14 9.2457 -3.4972 -0.3267 17 1 8.5392 -2.2172 -0.0661 18 1 9.2276 -4.3320 0.9013 19 1 10.6515 -3.2163 -0.7138 20 6 4.5743 -3.4057 -2.7709 21 8 2.9253 -2.1277 -4.0349 22 6 1.8465 -2.8853 -3.4790 23 6 1.5534 -2.4123 -2.0831 24 8 0.4942 -2.7169 -1.5769 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 2.2452 1.6197 -1.0277 28 1 1.4745 2.0648 0.5137 29 1 3.0159 1.1748 0.5138 30 1 1.4385 -2.0852 0.4352 31 1 2.9741 -1.1987 0.5900 32 1 4.4683 -1.3249 -1.1771 33 1 3.6015 -0.1518 -2.1942 34 1 5.9444 -0.9477 -3.1844 35 1 4.9113 -0.6427 -4.6192 36 1 5.5507 -2.6314 -5.6502 37 1 6.9698 -2.5221 -4.5717 38 1 6.2384 -5.5664 -3.0721 39 1 7.2841 -4.7474 -4.2570 40 1 9.6298 -5.9612 -1.6910 41 1 3.7495 -4.1083 -2.6517 42 1 5.1574 -3.3440 -1.8521 43 1 2.1207 -3.9399 -3.4536 44 1 0.9589 -2.7569 -4.0984 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:24 Heat of formation + Delta-G solvation = -61.809326 kcal Electronic energy + Delta-G solvation = -25303.709048 eV Core-core repulsion = 21835.135444 eV Total energy + Delta-G solvation = -3468.573604 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.22369 -40.13848 -37.82427 -37.58081 -35.20481 -34.82345 -32.69794 -30.26123 -29.50088 -28.71625 -28.09287 -27.10029 -26.26352 -24.41819 -22.35527 -21.64092 -19.97349 -19.38789 -18.75449 -18.55575 -17.78770 -17.07863 -16.87797 -16.80053 -15.95967 -15.81968 -15.57681 -15.11946 -15.05434 -14.75199 -14.63560 -14.35442 -14.12900 -13.92089 -13.82735 -13.41366 -13.10235 -12.76441 -12.73522 -12.70848 -12.63670 -12.44028 -12.33523 -12.19762 -12.07673 -11.87614 -11.74700 -11.42261 -11.26674 -10.60398 -10.51645 -10.04631 -9.79908 -9.01101 -8.13389 -6.33056 1.06738 1.39406 1.39623 1.41081 1.51409 2.00655 2.38886 2.57698 3.11926 3.14105 3.42114 3.52813 3.71848 3.86015 3.88472 3.96672 4.18552 4.30690 4.36760 4.42463 4.45196 4.54493 4.66394 4.71484 4.73928 4.74663 4.83299 4.89212 4.99302 5.01722 5.02933 5.13677 5.20484 5.24379 5.27516 5.41025 5.65342 5.74816 5.85937 5.94857 6.02510 6.26259 6.28284 6.44396 6.87665 6.92663 7.38678 8.89959 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.005080 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.067069 B = 5510.987610 C = 6315.567332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.153 4.153 3 C -0.112 4.112 4 C 0.140 3.860 5 N -0.592 5.592 6 C 0.103 3.897 7 C 0.097 3.903 8 C -0.107 4.107 9 C 0.051 3.949 10 N -0.537 5.537 11 C 0.194 3.806 12 C -0.549 4.549 13 H 0.073 0.927 14 C 0.009 3.991 15 N -0.930 5.930 16 Si 0.956 3.044 17 H -0.253 1.253 18 H -0.286 1.286 19 H -0.282 1.282 20 C 0.024 3.976 21 O -0.352 6.352 22 C 0.051 3.949 23 C 0.487 3.513 24 O -0.576 6.576 25 H 0.084 0.916 26 H 0.112 0.888 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.046 0.954 38 H -0.004 1.004 39 H 0.004 0.996 40 H 0.263 0.737 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.589 14.814 1.990 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.169 4.169 4 C 0.018 3.982 5 N -0.323 5.323 6 C -0.020 4.020 7 C 0.056 3.944 8 C -0.146 4.146 9 C -0.077 4.077 10 N -0.260 5.260 11 C 0.067 3.933 12 C -0.587 4.587 13 H 0.091 0.909 14 C -0.190 4.190 15 N -0.570 5.570 16 Si 0.781 3.219 17 H -0.177 1.177 18 H -0.212 1.212 19 H -0.208 1.208 20 C -0.105 4.105 21 O -0.270 6.270 22 C -0.028 4.028 23 C 0.275 3.725 24 O -0.457 6.457 25 H 0.102 0.898 26 H 0.130 0.870 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.014 0.986 39 H 0.022 0.978 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.242 14.278 1.725 18.887 hybrid contribution 1.175 -0.209 1.394 1.836 sum -11.067 14.068 3.119 18.169 Atomic orbital electron populations 1.23890 0.95673 1.01979 0.99604 1.22138 0.95730 0.96205 1.01346 1.20848 1.00363 0.93251 1.02410 1.20678 1.00731 0.94640 0.82144 1.47601 1.19325 1.51010 1.14364 1.22067 0.85003 0.99614 0.95321 1.22228 0.87546 0.94615 0.90007 1.22615 0.93519 0.98078 1.00347 1.22702 0.98637 0.88228 0.98177 1.63855 1.19033 1.19616 1.23533 1.19578 0.87338 0.92706 0.93683 1.22032 1.12121 1.05912 1.18677 0.90895 1.25870 0.97946 0.95555 0.99608 1.70096 1.24754 1.18753 1.43402 0.85533 0.78446 0.79209 0.78702 1.17651 1.21176 1.20835 1.23500 0.96428 0.95125 0.95409 1.87963 1.24592 1.73057 1.41418 1.22835 0.92279 0.97328 0.90339 1.21256 0.83634 0.77941 0.89639 1.90673 1.25181 1.58364 1.71450 0.89754 0.86984 0.91427 0.90826 0.90879 0.90841 0.87981 0.88457 0.88335 0.88689 0.87651 0.90956 0.93525 0.98632 0.97787 0.92797 0.92424 0.91645 0.89197 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.67 13.73 67.79 0.93 -2.74 16 2 C -0.15 -3.07 5.63 -16.48 -0.09 -3.17 16 3 C -0.11 -1.65 10.03 71.24 0.71 -0.94 16 4 C 0.14 3.17 5.44 85.63 0.47 3.63 16 5 N -0.59 -15.01 2.81 -830.54 -2.34 -17.35 16 6 C 0.10 2.35 5.39 86.11 0.46 2.82 16 7 C 0.10 2.70 0.82 -10.30 -0.01 2.69 16 8 C -0.11 -2.86 6.11 31.54 0.19 -2.67 16 9 C 0.05 1.77 6.46 86.69 0.56 2.33 16 10 N -0.54 -22.26 5.42 -890.94 -4.82 -27.09 16 11 C 0.19 9.91 5.04 85.56 0.43 10.34 16 12 C -0.55 -28.08 7.18 25.60 0.18 -27.90 16 13 H 0.07 3.46 6.45 -2.91 -0.02 3.45 16 14 C 0.01 0.50 5.46 84.65 0.46 0.97 16 15 N -0.93 -54.06 13.29 21.45 0.28 -53.77 16 16 Si 0.96 41.01 29.54 68.60 2.03 43.04 16 17 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 18 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 20 C 0.02 0.86 5.18 86.45 0.45 1.30 16 21 O -0.35 -9.96 10.43 -148.98 -1.55 -11.52 16 22 C 0.05 1.37 6.37 71.11 0.45 1.82 16 23 C 0.49 14.26 7.44 87.67 0.65 14.91 16 24 O -0.58 -19.77 15.70 -3.03 -0.05 -19.82 16 25 H 0.08 2.14 7.48 -2.91 -0.02 2.12 16 26 H 0.11 1.92 8.04 -2.91 -0.02 1.90 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 0.92 8.06 -2.39 -0.02 0.90 16 29 H 0.07 0.94 8.08 -2.39 -0.02 0.92 16 30 H 0.07 1.93 7.15 -2.39 -0.02 1.91 16 31 H 0.10 1.91 7.91 -2.39 -0.02 1.89 16 32 H 0.10 2.14 7.70 -2.39 -0.02 2.12 16 33 H 0.10 1.83 8.13 -2.39 -0.02 1.81 16 34 H 0.09 2.37 8.01 -2.39 -0.02 2.35 16 35 H 0.11 2.29 8.14 -2.39 -0.02 2.28 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.05 1.80 7.21 -2.39 -0.02 1.78 16 38 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 39 H 0.00 0.22 8.04 -2.39 -0.02 0.20 16 40 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 41 H 0.06 2.14 5.96 -2.39 -0.01 2.12 16 42 H 0.07 2.62 5.26 -2.39 -0.01 2.61 16 43 H 0.09 2.53 6.64 -2.39 -0.02 2.51 16 44 H 0.15 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -64.79 347.88 0.39 -64.41 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.98 Total: 18.70 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 5.86 Total: 3.40 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -6.88 Total: -98.21 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -1.60 Total: -31.34 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -64.79 0.39 -64.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.596 kcal (2) G-P(sol) polarization free energy of solvation -64.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds