Wall clock time and date at job start Tue Mar 31 2020 03:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20758 * 120.00070 * 2 1 4 4 C 1.50697 * 119.99554 * 180.02562 * 2 1 3 5 5 H 1.09004 * 109.47461 * 319.99240 * 4 2 1 6 6 C 1.53005 * 109.47401 * 79.99717 * 4 2 1 7 7 N 1.46508 * 109.47159 * 199.99292 * 4 2 1 8 8 C 1.46901 * 124.37660 * 120.01840 * 7 4 2 9 9 C 1.54756 * 105.53681 * 196.78187 * 8 7 4 10 10 C 1.53375 * 101.44146 * 335.69100 * 9 8 7 11 11 C 1.53875 * 111.13922 * 262.14940 * 10 9 8 12 12 C 1.55128 * 101.52975 * 205.19787 * 11 10 9 13 13 N 1.47959 * 104.93924 * 35.80109 * 12 11 10 14 14 C 1.46902 * 111.00043 * 213.88752 * 13 12 11 15 15 C 1.50696 * 109.47470 * 290.78476 * 14 13 12 16 16 H 1.08003 * 120.00087 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99956 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00308 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99908 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 60.00735 * 19 17 15 21 21 H 1.48503 * 109.47399 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47295 * 300.00832 * 19 17 15 23 23 C 1.47758 * 108.52458 * 336.12951 * 13 12 11 24 24 C 1.34835 * 124.37231 * 300.02904 * 7 4 2 25 25 O 1.21273 * 125.18640 * 358.82127 * 24 7 4 26 26 H 1.09010 * 109.46769 * 269.99798 * 1 2 3 27 27 H 1.09001 * 109.47028 * 29.99105 * 1 2 3 28 28 H 1.08997 * 109.47317 * 150.00330 * 1 2 3 29 29 H 1.09002 * 109.46974 * 179.97438 * 6 4 2 30 30 H 1.08998 * 109.46610 * 299.99423 * 6 4 2 31 31 H 1.09000 * 109.46986 * 59.99819 * 6 4 2 32 32 H 1.09004 * 110.24079 * 315.79798 * 8 7 4 33 33 H 1.09003 * 110.23476 * 77.76532 * 8 7 4 34 34 H 1.09001 * 111.03427 * 217.65536 * 9 8 7 35 35 H 1.09006 * 111.03172 * 93.72985 * 9 8 7 36 36 H 1.08998 * 111.01353 * 323.26526 * 11 10 9 37 37 H 1.09003 * 111.01306 * 87.10228 * 11 10 9 38 38 H 1.09006 * 110.35247 * 276.93763 * 12 11 10 39 39 H 1.08996 * 110.34909 * 154.66442 * 12 11 10 40 40 H 1.09001 * 109.47165 * 170.78450 * 14 13 12 41 41 H 1.09004 * 109.46739 * 50.79116 * 14 13 12 42 42 H 0.97000 * 119.99806 * 0.02562 * 18 17 15 43 43 H 1.08993 * 109.98261 * 121.22660 * 23 13 12 44 44 H 1.09000 * 109.97824 * 242.51380 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 -0.0006 5 1 1.7603 -2.0137 0.6598 6 6 2.2984 -1.8715 -1.4214 7 7 3.6287 -1.0794 0.4718 8 6 4.2139 -1.7217 1.6563 9 6 5.4670 -0.8836 2.0058 10 6 5.7993 -0.2524 0.6479 11 6 6.9032 -1.0429 -0.0762 12 6 7.5135 0.0477 -0.9953 13 7 7.4498 1.2947 -0.2015 14 6 7.2102 2.4576 -1.0665 15 6 8.4302 2.7140 -1.9132 16 1 9.2968 2.0764 -1.8186 17 6 8.4396 3.7617 -2.8093 18 7 7.3842 4.5377 -2.9249 19 14 9.9517 4.0790 -3.8594 20 1 10.2303 2.8862 -4.6990 21 1 9.7094 5.2547 -4.7337 22 1 11.1174 4.3484 -2.9799 23 6 6.3790 1.1552 0.8070 24 6 4.5136 -0.2550 -0.1244 25 8 4.3023 0.3862 -1.1319 26 1 -0.3633 0.0000 1.0278 27 1 -0.3633 0.8901 -0.5137 28 1 -0.3634 -0.8900 -0.5138 29 1 2.8437 -2.8153 -1.4218 30 1 1.2804 -2.0396 -1.7728 31 1 2.7985 -1.1630 -2.0817 32 1 3.5051 -1.7031 2.4842 33 1 4.4991 -2.7483 1.4263 34 1 6.2809 -1.5217 2.3501 35 1 5.2321 -0.1185 2.7458 36 1 7.6434 -1.4176 0.6307 37 1 6.4793 -1.8575 -0.6636 38 1 6.9244 0.1483 -1.9069 39 1 8.5482 -0.1956 -1.2365 40 1 7.0054 3.3329 -0.4500 41 1 6.3546 2.2599 -1.7123 42 1 6.5992 4.3732 -2.3794 43 1 6.7921 1.2768 1.8082 44 1 5.6026 1.8997 0.6312 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:04 Heat of formation + Delta-G solvation = -57.361527 kcal Electronic energy + Delta-G solvation = -25289.728545 eV Core-core repulsion = 21821.347812 eV Total energy + Delta-G solvation = -3468.380733 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.21036 -39.37048 -37.23895 -36.21621 -34.18148 -32.81721 -30.99339 -29.81953 -28.95661 -27.93108 -26.04206 -24.74371 -23.25768 -22.42200 -21.52585 -20.31389 -19.79259 -18.43667 -16.88164 -16.71686 -16.19987 -15.96070 -15.07816 -15.00830 -14.78543 -14.34087 -14.22194 -13.69912 -13.59890 -13.47438 -13.10657 -12.94619 -12.76898 -12.54418 -12.40665 -12.29334 -12.25276 -12.17303 -11.89753 -11.86336 -11.30086 -11.01959 -10.79405 -10.64273 -10.51310 -10.40673 -10.11835 -9.94407 -9.90878 -9.24219 -8.62996 -8.47279 -8.21602 -7.20009 -6.19923 -3.87356 1.85818 2.75729 2.91232 3.53088 3.56722 3.75052 3.82256 4.33479 4.40957 4.62540 4.66125 4.71344 4.74991 4.82530 4.88296 5.08434 5.12439 5.17301 5.20657 5.26021 5.34716 5.44089 5.47476 5.57272 5.68295 5.72107 5.74845 5.84079 5.93722 5.99033 6.03716 6.26305 6.36282 6.53282 6.65179 6.70631 7.12827 7.14084 7.38499 7.43969 7.90879 8.12193 8.46250 8.47738 8.74717 9.04352 9.83907 11.19517 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019929 B = 0.004561 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.662887 B = 6137.284259 C = 6874.448994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.328 3.672 3 O -0.417 6.417 4 C 0.113 3.887 5 H 0.111 0.889 6 C -0.162 4.162 7 N -0.627 5.627 8 C 0.108 3.892 9 C -0.118 4.118 10 C -0.116 4.116 11 C -0.105 4.105 12 C 0.060 3.940 13 N -0.516 5.516 14 C 0.178 3.822 15 C -0.585 4.585 16 H 0.054 0.946 17 C 0.012 3.988 18 N -0.916 5.916 19 Si 1.073 2.927 20 H -0.289 1.289 21 H -0.284 1.284 22 H -0.288 1.288 23 C 0.066 3.934 24 C 0.538 3.462 25 O -0.488 6.488 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.014 0.986 41 H -0.007 1.007 42 H 0.268 0.732 43 H 0.073 0.927 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.142 -18.915 11.184 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.199 3.801 3 O -0.286 6.286 4 C 0.008 3.992 5 H 0.128 0.872 6 C -0.220 4.220 7 N -0.364 5.364 8 C -0.015 4.015 9 C -0.156 4.156 10 C -0.120 4.120 11 C -0.144 4.144 12 C -0.068 4.068 13 N -0.240 5.240 14 C 0.052 3.948 15 C -0.624 4.624 16 H 0.073 0.927 17 C -0.192 4.192 18 N -0.553 5.553 19 Si 0.902 3.098 20 H -0.216 1.216 21 H -0.209 1.209 22 H -0.215 1.215 23 C -0.063 4.063 24 C 0.325 3.675 25 O -0.359 6.359 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.032 0.968 41 H 0.011 0.989 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.884 -16.871 9.652 22.782 hybrid contribution -1.685 -1.301 0.923 2.321 sum -13.568 -18.172 10.576 25.024 Atomic orbital electron populations 1.22263 0.93956 1.04935 1.04448 1.25036 0.92019 0.90683 0.72407 1.90549 1.71466 1.34366 1.32253 1.21359 0.82811 0.96740 0.98258 0.87152 1.22059 1.03048 1.02154 0.94694 1.48363 1.11485 1.46817 1.29776 1.22112 0.95541 0.96593 0.87239 1.22536 0.97189 0.99526 0.96335 1.21783 0.94585 0.99896 0.95772 1.22571 0.95528 0.97523 0.98768 1.22888 1.00378 0.88256 0.95271 1.63814 1.41007 1.03817 1.15326 1.20022 0.96657 0.87227 0.90858 1.21954 1.00796 1.16687 1.22989 0.92744 1.25830 1.02752 0.93135 0.97454 1.70750 1.04740 1.39014 1.40754 0.83496 0.74371 0.76072 0.75902 1.21598 1.20934 1.21470 1.22588 0.93498 0.92062 0.98167 1.20264 0.85121 0.77784 0.84316 1.90761 1.79764 1.41564 1.23792 0.88782 0.89509 0.89732 0.91185 0.90937 0.90373 0.90873 0.91199 0.88872 0.89884 0.89961 0.91660 0.93357 0.90790 0.96763 0.98881 0.92204 0.90836 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.51 10.25 36.01 0.37 -1.14 16 2 C 0.33 4.10 6.43 -29.04 -0.19 3.91 16 3 O -0.42 -7.77 14.89 -15.04 -0.22 -7.99 16 4 C 0.11 1.17 3.20 -69.08 -0.22 0.95 16 5 H 0.11 0.67 8.07 -51.93 -0.42 0.25 16 6 C -0.16 -1.65 9.18 37.16 0.34 -1.31 16 7 N -0.63 -8.16 2.77 -166.29 -0.46 -8.62 16 8 C 0.11 0.98 7.32 -2.90 -0.02 0.96 16 9 C -0.12 -1.27 6.15 -25.61 -0.16 -1.43 16 10 C -0.12 -1.87 0.66 -155.32 -0.10 -1.97 16 11 C -0.11 -1.66 6.02 -25.15 -0.15 -1.81 16 12 C 0.06 1.28 6.09 -2.12 -0.01 1.27 16 13 N -0.52 -12.34 5.17 -232.99 -1.20 -13.54 16 14 C 0.18 5.19 3.64 -4.98 -0.02 5.17 16 15 C -0.59 -18.02 8.81 -34.44 -0.30 -18.32 16 16 H 0.05 1.65 7.77 -52.48 -0.41 1.24 16 17 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 18 N -0.92 -30.24 13.65 55.43 0.76 -29.49 16 19 Si 1.07 26.99 29.90 -169.99 -5.08 21.90 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C 0.07 1.33 5.95 -3.32 -0.02 1.31 16 24 C 0.54 9.66 5.30 -11.30 -0.06 9.60 16 25 O -0.49 -11.30 14.68 -15.48 -0.23 -11.52 16 26 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.41 8.00 -51.93 -0.42 -0.01 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.52 8.02 -51.93 -0.42 0.10 16 31 H 0.08 1.15 6.77 -51.93 -0.35 0.79 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.80 7.62 -51.93 -0.40 0.40 16 35 H 0.08 0.87 7.90 -51.93 -0.41 0.46 16 36 H 0.08 1.10 7.76 -51.93 -0.40 0.69 16 37 H 0.06 0.94 8.00 -51.93 -0.42 0.52 16 38 H 0.05 1.18 7.62 -51.93 -0.40 0.79 16 39 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.01 0.44 7.91 -51.93 -0.41 0.03 16 41 H -0.01 -0.21 7.71 -51.93 -0.40 -0.61 16 42 H 0.27 9.01 7.22 -40.82 -0.29 8.71 16 43 H 0.07 1.31 7.79 -51.93 -0.40 0.91 16 44 H 0.05 1.20 7.24 -51.93 -0.38 0.83 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -40.13 351.11 -9.04 -49.17 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -7.25 Total: -2.67 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -0.64 Total: -2.54 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.91 Total: -51.64 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.45 Total: -19.52 kcal Atomic # 14 Polarization: 26.99 SS G_CDS: -5.08 Total: 21.90 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -40.13 -9.04 -49.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.187 kcal (2) G-P(sol) polarization free energy of solvation -40.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds