Wall clock time and date at job start Tue Mar 31 2020 03:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20758 * 120.00070 * 2 1 4 4 C 1.50697 * 119.99554 * 180.02562 * 2 1 3 5 5 H 1.09004 * 109.47461 * 319.99240 * 4 2 1 6 6 C 1.53005 * 109.47401 * 79.99717 * 4 2 1 7 7 N 1.46508 * 109.47159 * 199.99292 * 4 2 1 8 8 C 1.46901 * 124.37660 * 120.01840 * 7 4 2 9 9 C 1.54756 * 105.53681 * 196.78187 * 8 7 4 10 10 C 1.53375 * 101.44146 * 335.69100 * 9 8 7 11 11 C 1.53875 * 111.13922 * 262.14940 * 10 9 8 12 12 C 1.55128 * 101.52975 * 205.19787 * 11 10 9 13 13 N 1.47959 * 104.93924 * 35.80109 * 12 11 10 14 14 C 1.46902 * 111.00043 * 213.88752 * 13 12 11 15 15 C 1.50696 * 109.47470 * 290.78476 * 14 13 12 16 16 H 1.08003 * 120.00087 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99956 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00308 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99908 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 60.00735 * 19 17 15 21 21 H 1.48503 * 109.47399 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47295 * 300.00832 * 19 17 15 23 23 C 1.47758 * 108.52458 * 336.12951 * 13 12 11 24 24 C 1.34835 * 124.37231 * 300.02904 * 7 4 2 25 25 O 1.21273 * 125.18640 * 358.82127 * 24 7 4 26 26 H 1.09010 * 109.46769 * 269.99798 * 1 2 3 27 27 H 1.09001 * 109.47028 * 29.99105 * 1 2 3 28 28 H 1.08997 * 109.47317 * 150.00330 * 1 2 3 29 29 H 1.09002 * 109.46974 * 179.97438 * 6 4 2 30 30 H 1.08998 * 109.46610 * 299.99423 * 6 4 2 31 31 H 1.09000 * 109.46986 * 59.99819 * 6 4 2 32 32 H 1.09004 * 110.24079 * 315.79798 * 8 7 4 33 33 H 1.09003 * 110.23476 * 77.76532 * 8 7 4 34 34 H 1.09001 * 111.03427 * 217.65536 * 9 8 7 35 35 H 1.09006 * 111.03172 * 93.72985 * 9 8 7 36 36 H 1.08998 * 111.01353 * 323.26526 * 11 10 9 37 37 H 1.09003 * 111.01306 * 87.10228 * 11 10 9 38 38 H 1.09006 * 110.35247 * 276.93763 * 12 11 10 39 39 H 1.08996 * 110.34909 * 154.66442 * 12 11 10 40 40 H 1.09001 * 109.47165 * 170.78450 * 14 13 12 41 41 H 1.09004 * 109.46739 * 50.79116 * 14 13 12 42 42 H 0.97000 * 119.99806 * 0.02562 * 18 17 15 43 43 H 1.08993 * 109.98261 * 121.22660 * 23 13 12 44 44 H 1.09000 * 109.97824 * 242.51380 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 -0.0006 5 1 1.7603 -2.0137 0.6598 6 6 2.2984 -1.8715 -1.4214 7 7 3.6287 -1.0794 0.4718 8 6 4.2139 -1.7217 1.6563 9 6 5.4670 -0.8836 2.0058 10 6 5.7993 -0.2524 0.6479 11 6 6.9032 -1.0429 -0.0762 12 6 7.5135 0.0477 -0.9953 13 7 7.4498 1.2947 -0.2015 14 6 7.2102 2.4576 -1.0665 15 6 8.4302 2.7140 -1.9132 16 1 9.2968 2.0764 -1.8186 17 6 8.4396 3.7617 -2.8093 18 7 7.3842 4.5377 -2.9249 19 14 9.9517 4.0790 -3.8594 20 1 10.2303 2.8862 -4.6990 21 1 9.7094 5.2547 -4.7337 22 1 11.1174 4.3484 -2.9799 23 6 6.3790 1.1552 0.8070 24 6 4.5136 -0.2550 -0.1244 25 8 4.3023 0.3862 -1.1319 26 1 -0.3633 0.0000 1.0278 27 1 -0.3633 0.8901 -0.5137 28 1 -0.3634 -0.8900 -0.5138 29 1 2.8437 -2.8153 -1.4218 30 1 1.2804 -2.0396 -1.7728 31 1 2.7985 -1.1630 -2.0817 32 1 3.5051 -1.7031 2.4842 33 1 4.4991 -2.7483 1.4263 34 1 6.2809 -1.5217 2.3501 35 1 5.2321 -0.1185 2.7458 36 1 7.6434 -1.4176 0.6307 37 1 6.4793 -1.8575 -0.6636 38 1 6.9244 0.1483 -1.9069 39 1 8.5482 -0.1956 -1.2365 40 1 7.0054 3.3329 -0.4500 41 1 6.3546 2.2599 -1.7123 42 1 6.5992 4.3732 -2.3794 43 1 6.7921 1.2768 1.8082 44 1 5.6026 1.8997 0.6312 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031451.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:03 Heat of formation + Delta-G solvation = -88.457532 kcal Electronic energy + Delta-G solvation = -25291.076969 eV Core-core repulsion = 21821.347812 eV Total energy + Delta-G solvation = -3469.729157 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.40002 -40.54208 -38.80448 -37.49913 -35.79152 -34.62217 -32.37790 -31.00402 -30.12213 -29.17895 -27.97147 -25.86915 -24.85976 -24.18996 -22.53422 -22.10998 -20.96889 -19.63114 -18.98618 -17.90888 -17.31411 -16.99848 -16.56646 -16.45358 -16.00247 -15.69846 -15.56663 -15.37740 -15.08371 -14.88724 -14.58208 -14.34574 -14.01041 -13.75532 -13.59285 -13.46594 -13.37281 -13.15186 -13.05655 -12.92917 -12.80968 -12.73695 -12.60536 -12.39837 -12.13968 -12.00312 -11.91766 -11.61941 -10.90319 -10.81792 -10.64776 -10.54299 -9.63164 -9.26185 -8.77265 -6.47397 0.92352 1.47114 1.53452 1.59054 1.78315 1.93330 2.52931 2.95518 3.07590 3.13938 3.30454 3.42000 3.50861 3.87076 3.91610 4.00008 4.08080 4.10515 4.26203 4.38600 4.42916 4.49090 4.53358 4.59529 4.60326 4.67317 4.69073 4.72180 4.74964 4.80536 4.84966 4.96846 5.04338 5.07123 5.11696 5.15983 5.18106 5.62614 5.68858 5.86194 6.06362 6.20289 6.29753 6.49167 6.54561 7.24351 7.37261 8.60278 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019929 B = 0.004561 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.662887 B = 6137.284259 C = 6874.448994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.322 3.678 3 O -0.496 6.496 4 C 0.103 3.897 5 H 0.174 0.826 6 C -0.156 4.156 7 N -0.621 5.621 8 C 0.104 3.896 9 C -0.109 4.109 10 C -0.119 4.119 11 C -0.084 4.084 12 C 0.054 3.946 13 N -0.520 5.520 14 C 0.200 3.800 15 C -0.598 4.598 16 H 0.061 0.939 17 C -0.046 4.046 18 N -0.938 5.938 19 Si 1.130 2.870 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.261 1.261 23 C 0.063 3.937 24 C 0.521 3.479 25 O -0.562 6.562 26 H 0.122 0.878 27 H 0.068 0.932 28 H 0.122 0.878 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.019 0.981 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.131 0.869 35 H 0.084 0.916 36 H 0.124 0.876 37 H 0.083 0.917 38 H 0.000 1.000 39 H 0.078 0.922 40 H -0.018 1.018 41 H -0.058 1.058 42 H 0.244 0.756 43 H 0.103 0.897 44 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.978 -23.395 13.607 30.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.198 3.802 3 O -0.371 6.371 4 C 0.000 4.000 5 H 0.192 0.808 6 C -0.214 4.214 7 N -0.355 5.355 8 C -0.017 4.017 9 C -0.146 4.146 10 C -0.123 4.123 11 C -0.122 4.122 12 C -0.074 4.074 13 N -0.243 5.243 14 C 0.073 3.927 15 C -0.636 4.636 16 H 0.079 0.921 17 C -0.241 4.241 18 N -0.575 5.575 19 Si 0.949 3.051 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.186 1.186 23 C -0.065 4.065 24 C 0.309 3.691 25 O -0.439 6.439 26 H 0.141 0.859 27 H 0.087 0.913 28 H 0.141 0.859 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.039 0.961 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.150 0.850 35 H 0.103 0.897 36 H 0.142 0.858 37 H 0.102 0.898 38 H 0.018 0.982 39 H 0.096 0.904 40 H 0.000 1.000 41 H -0.040 1.040 42 H 0.053 0.947 43 H 0.121 0.879 44 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -11.769 -21.450 12.160 27.322 hybrid contribution -1.854 0.054 0.211 1.867 sum -13.623 -21.396 12.371 28.221 Atomic orbital electron populations 1.22303 0.90075 1.05942 1.06473 1.26078 0.94433 0.90432 0.69261 1.90561 1.73309 1.37050 1.36202 1.21839 0.81694 0.96812 0.99633 0.80845 1.22034 1.04718 1.01071 0.93601 1.48519 1.11850 1.45147 1.30033 1.22540 0.95283 0.97308 0.86560 1.22643 0.99451 1.00030 0.92498 1.21806 0.93936 0.97202 0.99353 1.22547 0.95773 0.95659 0.98199 1.22928 1.00248 0.89436 0.94783 1.63760 1.42510 1.03217 1.14829 1.19573 0.94449 0.88493 0.90218 1.22287 1.01086 1.16892 1.23334 0.92094 1.27797 1.05136 0.92563 0.98652 1.70915 1.05032 1.40334 1.41233 0.82823 0.70759 0.76820 0.74710 1.19154 1.20733 1.18567 1.22678 0.91664 0.94227 0.97976 1.20715 0.86747 0.77857 0.83736 1.90731 1.81259 1.44709 1.27182 0.85940 0.91267 0.85916 0.89452 0.87526 0.96141 0.87294 0.87574 0.85041 0.89740 0.85778 0.89800 0.98165 0.90381 1.00038 1.04020 0.94662 0.87904 0.97814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 10.25 71.24 0.73 -1.78 16 2 C 0.32 8.00 6.43 29.10 0.19 8.19 16 3 O -0.50 -20.16 14.89 18.68 0.28 -19.88 16 4 C 0.10 1.88 3.20 44.24 0.14 2.02 16 5 H 0.17 1.00 8.07 -2.39 -0.02 0.98 16 6 C -0.16 -2.98 9.18 71.98 0.66 -2.32 16 7 N -0.62 -14.93 2.77 -798.39 -2.21 -17.14 16 8 C 0.10 1.33 7.32 86.90 0.64 1.96 16 9 C -0.11 -1.88 6.15 31.32 0.19 -1.69 16 10 C -0.12 -3.76 0.66 -52.71 -0.03 -3.79 16 11 C -0.08 -2.48 6.02 31.62 0.19 -2.29 16 12 C 0.05 2.41 6.09 86.83 0.53 2.94 16 13 N -0.52 -26.38 5.17 -891.06 -4.60 -30.99 16 14 C 0.20 12.78 3.64 85.56 0.31 13.09 16 15 C -0.60 -38.82 8.81 25.60 0.23 -38.59 16 16 H 0.06 3.80 7.77 -2.91 -0.02 3.78 16 17 C -0.05 -2.95 5.46 84.65 0.46 -2.49 16 18 N -0.94 -65.79 13.65 21.45 0.29 -65.49 16 19 Si 1.13 54.99 29.90 68.60 2.05 57.04 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 22 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 23 C 0.06 2.68 5.95 86.16 0.51 3.19 16 24 C 0.52 19.50 5.30 87.43 0.46 19.97 16 25 O -0.56 -29.02 14.68 17.11 0.25 -28.77 16 26 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.12 0.67 8.00 -2.39 -0.02 0.65 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.11 1.22 8.02 -2.39 -0.02 1.21 16 31 H 0.02 0.62 6.77 -2.39 -0.02 0.61 16 32 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.13 1.35 7.62 -2.39 -0.02 1.33 16 35 H 0.08 1.48 7.90 -2.38 -0.02 1.46 16 36 H 0.12 2.69 7.76 -2.39 -0.02 2.67 16 37 H 0.08 2.21 8.00 -2.39 -0.02 2.19 16 38 H 0.00 -0.01 7.62 -2.38 -0.02 -0.03 16 39 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 40 H -0.02 -1.26 7.91 -2.39 -0.02 -1.28 16 41 H -0.06 -4.22 7.71 -2.39 -0.02 -4.24 16 42 H 0.24 18.02 7.22 -92.71 -0.67 17.35 16 43 H 0.10 3.68 7.79 -2.39 -0.02 3.66 16 44 H 0.00 0.17 7.24 -2.39 -0.02 0.15 16 Total: -1.00 -105.45 351.11 2.34 -103.11 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: 1.07 Total: 3.70 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 5.21 Total: -1.58 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -6.52 Total: -113.62 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: 0.53 Total: -48.65 kcal Atomic # 14 Polarization: 54.99 SS G_CDS: 2.05 Total: 57.04 kcal Total: -105.45 2.34 -103.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031451.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.653 kcal (2) G-P(sol) polarization free energy of solvation -105.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds