Wall clock time and date at job start Tue Mar 31 2020 02:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00029 * 2 1 4 4 N 1.46499 * 109.47167 * 124.99903 * 3 2 1 5 5 C 1.46789 * 124.35523 * 270.04926 * 4 3 2 6 6 C 1.54378 * 105.43066 * 196.94794 * 5 4 3 7 7 C 1.54497 * 101.87679 * 334.60133 * 6 5 4 8 8 C 1.34440 * 124.35180 * 90.02494 * 4 3 2 9 9 O 1.21279 * 124.94169 * 359.65487 * 8 4 3 10 10 C 1.54251 * 108.51627 * 88.91193 * 6 5 4 11 11 O 1.40361 * 108.69739 * 47.87106 * 10 6 5 12 12 C 1.44163 * 117.10645 * 92.95178 * 11 10 6 13 13 C 1.53858 * 112.87877 * 317.94255 * 12 11 10 14 14 N 1.44338 * 112.30524 * 318.36874 * 13 12 11 15 15 C 1.46904 * 110.99932 * 215.80225 * 14 13 12 16 16 C 1.50699 * 109.47050 * 66.89585 * 15 14 13 17 17 H 1.08002 * 120.00195 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99916 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99725 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00117 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46920 * 60.00267 * 20 18 16 22 22 H 1.48501 * 109.47390 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.47493 * 300.00433 * 20 18 16 24 24 C 1.46506 * 112.72076 * 213.49950 * 6 5 4 25 25 H 1.08005 * 120.00466 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00144 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00061 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47042 * 4.99838 * 3 2 1 29 29 H 1.08999 * 109.46772 * 244.99803 * 3 2 1 30 30 H 1.08998 * 110.25403 * 77.95447 * 5 4 3 31 31 H 1.09001 * 110.25172 * 315.93434 * 5 4 3 32 32 H 1.09001 * 110.49171 * 143.45755 * 7 6 5 33 33 H 1.08993 * 110.49268 * 266.12217 * 7 6 5 34 34 H 1.09000 * 109.59517 * 167.62811 * 10 6 5 35 35 H 1.08998 * 109.60283 * 288.10527 * 10 6 5 36 36 H 1.09003 * 108.79916 * 197.07283 * 12 11 10 37 37 H 1.08999 * 108.80152 * 78.82451 * 12 11 10 38 38 H 1.08998 * 108.91798 * 197.63374 * 13 12 11 39 39 H 1.09003 * 108.91047 * 79.09377 * 13 12 11 40 40 H 1.08999 * 109.47050 * 186.89643 * 15 14 13 41 41 H 1.08998 * 109.46941 * 306.89636 * 15 14 13 42 42 H 0.97007 * 119.99536 * 180.02562 * 19 18 16 43 43 H 1.08991 * 108.93183 * 58.81864 * 24 6 5 44 44 H 1.08997 * 108.92636 * 177.49814 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.6597 1.8425 2.4665 6 6 4.0150 2.0743 3.1685 7 6 4.9329 1.0791 2.4243 8 6 4.2630 0.8916 1.0806 9 8 4.7938 0.4141 0.1002 10 6 4.4911 3.5073 2.8535 11 8 3.4253 4.3939 3.0728 12 6 3.3359 5.0041 4.3759 13 6 3.6246 4.0166 5.5199 14 7 3.0120 2.7284 5.2993 15 6 2.5474 2.1430 6.5640 16 6 1.4136 2.9697 7.1136 17 1 1.0725 3.8429 6.5773 18 6 0.8116 2.6112 8.3011 19 7 1.2273 1.5482 8.9544 20 14 -0.5934 3.6363 8.9827 21 1 -1.7113 3.6558 8.0054 22 1 -1.0640 3.0437 10.2605 23 1 -0.1223 5.0239 9.2238 24 6 3.9559 1.8213 4.6104 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6213 1.4025 -0.9314 30 1 2.0713 1.1072 3.0153 31 1 2.1115 2.7811 2.3853 32 1 5.9300 1.5008 2.2981 33 1 4.9833 0.1318 2.9610 34 1 5.3237 3.7678 3.5070 35 1 4.8079 3.5667 1.8123 36 1 2.3322 5.4088 4.5062 37 1 4.0525 5.8237 4.4299 38 1 3.2437 4.4342 6.4518 39 1 4.7030 3.8845 5.6088 40 1 2.2021 1.1243 6.3877 41 1 3.3681 2.1295 7.2812 42 1 0.8035 1.2959 9.7897 43 1 3.6411 0.7911 4.7760 44 1 4.9504 1.9593 5.0346 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:11 Heat of formation + Delta-G solvation = -41.496707 kcal Electronic energy + Delta-G solvation = -25054.100313 eV Core-core repulsion = 21586.407530 eV Total energy + Delta-G solvation = -3467.692782 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.96241 -38.75395 -36.26611 -35.92004 -35.11939 -32.74127 -32.18390 -29.28298 -28.23285 -26.94409 -26.46618 -25.74709 -24.10043 -22.29058 -20.51309 -20.13264 -19.56798 -19.08449 -16.76032 -16.50440 -16.34548 -16.12307 -15.65142 -15.38267 -14.80428 -14.59221 -14.46546 -14.22640 -13.79347 -13.53763 -13.34577 -13.05038 -12.78312 -12.54551 -12.31713 -12.09731 -11.92988 -11.80500 -11.39167 -11.22515 -11.10261 -10.89051 -10.68996 -10.66605 -10.49910 -10.22705 -9.99274 -9.74408 -9.48475 -9.29886 -9.13672 -8.58805 -8.52639 -7.41606 -6.11469 -4.13589 2.08107 2.68200 3.27619 3.28009 3.32835 3.34989 3.93613 4.33385 4.46339 4.52100 4.65650 4.84943 4.91959 5.05042 5.07868 5.24439 5.34804 5.38333 5.51256 5.53540 5.57114 5.60964 5.64498 5.71563 5.82363 5.84910 5.94504 6.02254 6.04600 6.19954 6.29612 6.40090 6.44696 6.49825 6.53585 6.77020 7.13667 7.20739 7.24290 7.62839 7.70062 7.97726 8.09990 8.27374 8.40013 8.93987 9.51312 10.99021 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016156 B = 0.004611 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.697419 B = 6070.886447 C = 6781.717276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.171 4.171 3 C 0.153 3.847 4 N -0.612 5.612 5 C 0.128 3.872 6 C -0.090 4.090 7 C -0.146 4.146 8 C 0.518 3.482 9 O -0.545 6.545 10 C 0.085 3.915 11 O -0.377 6.377 12 C 0.072 3.928 13 C 0.028 3.972 14 N -0.523 5.523 15 C 0.197 3.803 16 C -0.510 4.510 17 H 0.064 0.936 18 C 0.057 3.943 19 N -0.897 5.897 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.068 3.932 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.095 0.905 39 H 0.022 0.978 40 H 0.032 0.968 41 H -0.009 1.009 42 H 0.263 0.737 43 H 0.072 0.928 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.222 1.918 -12.781 13.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.190 4.190 3 C 0.032 3.968 4 N -0.345 5.345 5 C 0.006 3.994 6 C -0.091 4.091 7 C -0.186 4.186 8 C 0.306 3.694 9 O -0.424 6.424 10 C 0.007 3.993 11 O -0.295 6.295 12 C -0.004 4.004 13 C -0.102 4.102 14 N -0.247 5.247 15 C 0.072 3.928 16 C -0.549 4.549 17 H 0.082 0.918 18 C -0.144 4.144 19 N -0.536 5.536 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.061 4.061 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.126 0.874 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.113 0.887 39 H 0.040 0.960 40 H 0.050 0.950 41 H 0.009 0.991 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.857 1.695 -13.591 14.230 hybrid contribution 0.048 0.142 1.387 1.395 sum 3.906 1.837 -12.205 12.945 Atomic orbital electron populations 1.23873 0.95680 1.02110 0.99857 1.23320 0.96196 0.99074 1.00443 1.20427 0.91789 0.95449 0.89162 1.48414 1.11977 1.61662 1.12407 1.22093 0.96580 1.00735 0.79997 1.21068 0.95245 0.96402 0.96397 1.22399 1.00097 1.01726 0.94424 1.20874 0.82138 0.76609 0.89736 1.90685 1.68768 1.45852 1.37071 1.22292 0.89470 0.87508 1.00059 1.87365 1.49214 1.60374 1.32525 1.23131 1.01878 0.93500 0.81930 1.22369 0.96062 0.92392 0.99351 1.61372 1.35274 1.01359 1.26673 1.19799 0.94557 0.95577 0.82869 1.21086 1.16509 1.11734 1.05569 0.91823 1.24974 0.97355 0.95299 0.96799 1.69944 1.41991 1.25185 1.16517 0.86566 0.82479 0.80221 0.78173 1.20119 1.21380 1.20269 1.20913 0.95218 0.98370 0.91572 0.88261 0.88345 0.87418 0.89726 0.89559 0.90826 0.88248 0.88185 0.87648 0.93170 0.90429 0.89157 0.93977 0.88678 0.95951 0.95039 0.99103 0.92782 0.90956 0.94841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 14.32 29.02 0.42 -1.39 16 2 C -0.17 -1.98 9.85 -36.02 -0.35 -2.33 16 3 C 0.15 1.82 6.37 -5.19 -0.03 1.79 16 4 N -0.61 -8.29 2.92 -173.81 -0.51 -8.80 16 5 C 0.13 1.81 6.08 -3.16 -0.02 1.79 16 6 C -0.09 -1.21 0.64 -155.44 -0.10 -1.31 16 7 C -0.15 -1.79 5.78 -26.80 -0.15 -1.94 16 8 C 0.52 7.61 7.85 -10.84 -0.09 7.52 16 9 O -0.55 -9.66 17.59 5.56 0.10 -9.57 16 10 C 0.08 1.11 5.17 37.81 0.20 1.30 16 11 O -0.38 -5.63 8.68 -33.77 -0.29 -5.92 16 12 C 0.07 1.07 7.02 37.60 0.26 1.33 16 13 C 0.03 0.48 4.82 -4.75 -0.02 0.45 16 14 N -0.52 -9.91 4.18 -240.62 -1.01 -10.92 16 15 C 0.20 4.67 4.60 -4.97 -0.02 4.65 16 16 C -0.51 -13.28 8.11 -34.44 -0.28 -13.56 16 17 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 18 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -25.46 13.29 55.43 0.74 -24.72 16 20 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 C 0.07 1.06 3.76 -6.35 -0.02 1.04 16 25 H 0.10 0.92 7.84 -52.48 -0.41 0.50 16 26 H 0.10 0.90 8.06 -52.49 -0.42 0.48 16 27 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.08 0.89 7.79 -51.93 -0.40 0.48 16 29 H 0.09 1.03 7.93 -51.93 -0.41 0.62 16 30 H 0.07 1.14 7.96 -51.93 -0.41 0.73 16 31 H 0.10 1.52 6.61 -51.93 -0.34 1.18 16 32 H 0.10 1.08 7.86 -51.93 -0.41 0.67 16 33 H 0.11 1.21 7.95 -51.93 -0.41 0.80 16 34 H 0.05 0.62 7.15 -51.93 -0.37 0.25 16 35 H 0.08 0.96 7.81 -51.93 -0.41 0.56 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 1.82 6.64 -51.93 -0.34 1.48 16 39 H 0.02 0.36 6.73 -51.93 -0.35 0.01 16 40 H 0.03 0.81 7.80 -51.93 -0.40 0.41 16 41 H -0.01 -0.23 8.11 -51.93 -0.42 -0.65 16 42 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.07 1.17 7.61 -51.93 -0.40 0.78 16 44 H 0.03 0.51 7.41 -51.93 -0.38 0.12 16 LS Contribution 348.84 15.07 5.26 5.26 Total: -1.00 -29.67 348.84 -8.16 -37.83 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.11 Total: 0.39 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -0.32 Total: 0.80 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -0.78 Total: -44.44 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.20 Total: -15.49 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.67 -8.16 -37.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.665 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds