Wall clock time and date at job start Tue Mar 31 2020 02:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00029 * 2 1 4 4 N 1.46499 * 109.47167 * 124.99903 * 3 2 1 5 5 C 1.46789 * 124.35523 * 270.04926 * 4 3 2 6 6 C 1.54378 * 105.43066 * 196.94794 * 5 4 3 7 7 C 1.54497 * 101.87679 * 334.60133 * 6 5 4 8 8 C 1.34440 * 124.35180 * 90.02494 * 4 3 2 9 9 O 1.21279 * 124.94169 * 359.65487 * 8 4 3 10 10 C 1.54251 * 108.51627 * 88.91193 * 6 5 4 11 11 O 1.40361 * 108.69739 * 47.87106 * 10 6 5 12 12 C 1.44163 * 117.10645 * 92.95178 * 11 10 6 13 13 C 1.53858 * 112.87877 * 317.94255 * 12 11 10 14 14 N 1.44338 * 112.30524 * 318.36874 * 13 12 11 15 15 C 1.46904 * 110.99932 * 215.80225 * 14 13 12 16 16 C 1.50699 * 109.47050 * 66.89585 * 15 14 13 17 17 H 1.08002 * 120.00195 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99916 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99725 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00117 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46920 * 60.00267 * 20 18 16 22 22 H 1.48501 * 109.47390 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.47493 * 300.00433 * 20 18 16 24 24 C 1.46506 * 112.72076 * 213.49950 * 6 5 4 25 25 H 1.08005 * 120.00466 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00144 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00061 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47042 * 4.99838 * 3 2 1 29 29 H 1.08999 * 109.46772 * 244.99803 * 3 2 1 30 30 H 1.08998 * 110.25403 * 77.95447 * 5 4 3 31 31 H 1.09001 * 110.25172 * 315.93434 * 5 4 3 32 32 H 1.09001 * 110.49171 * 143.45755 * 7 6 5 33 33 H 1.08993 * 110.49268 * 266.12217 * 7 6 5 34 34 H 1.09000 * 109.59517 * 167.62811 * 10 6 5 35 35 H 1.08998 * 109.60283 * 288.10527 * 10 6 5 36 36 H 1.09003 * 108.79916 * 197.07283 * 12 11 10 37 37 H 1.08999 * 108.80152 * 78.82451 * 12 11 10 38 38 H 1.08998 * 108.91798 * 197.63374 * 13 12 11 39 39 H 1.09003 * 108.91047 * 79.09377 * 13 12 11 40 40 H 1.08999 * 109.47050 * 186.89643 * 15 14 13 41 41 H 1.08998 * 109.46941 * 306.89636 * 15 14 13 42 42 H 0.97007 * 119.99536 * 180.02562 * 19 18 16 43 43 H 1.08991 * 108.93183 * 58.81864 * 24 6 5 44 44 H 1.08997 * 108.92636 * 177.49814 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.6597 1.8425 2.4665 6 6 4.0150 2.0743 3.1685 7 6 4.9329 1.0791 2.4243 8 6 4.2630 0.8916 1.0806 9 8 4.7938 0.4141 0.1002 10 6 4.4911 3.5073 2.8535 11 8 3.4253 4.3939 3.0728 12 6 3.3359 5.0041 4.3759 13 6 3.6246 4.0166 5.5199 14 7 3.0120 2.7284 5.2993 15 6 2.5474 2.1430 6.5640 16 6 1.4136 2.9697 7.1136 17 1 1.0725 3.8429 6.5773 18 6 0.8116 2.6112 8.3011 19 7 1.2273 1.5482 8.9544 20 14 -0.5934 3.6363 8.9827 21 1 -1.7113 3.6558 8.0054 22 1 -1.0640 3.0437 10.2605 23 1 -0.1223 5.0239 9.2238 24 6 3.9559 1.8213 4.6104 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6213 1.4025 -0.9314 30 1 2.0713 1.1072 3.0153 31 1 2.1115 2.7811 2.3853 32 1 5.9300 1.5008 2.2981 33 1 4.9833 0.1318 2.9610 34 1 5.3237 3.7678 3.5070 35 1 4.8079 3.5667 1.8123 36 1 2.3322 5.4088 4.5062 37 1 4.0525 5.8237 4.4299 38 1 3.2437 4.4342 6.4518 39 1 4.7030 3.8845 5.6088 40 1 2.2021 1.1243 6.3877 41 1 3.3681 2.1295 7.2812 42 1 0.8035 1.2959 9.7897 43 1 3.6411 0.7911 4.7760 44 1 4.9504 1.9593 5.0346 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:10 Heat of formation + Delta-G solvation = -60.550382 kcal Electronic energy + Delta-G solvation = -25054.926542 eV Core-core repulsion = 21586.407530 eV Total energy + Delta-G solvation = -3468.519012 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.11931 -40.00009 -37.47261 -37.32363 -36.17016 -34.60247 -33.35357 -30.58015 -29.76485 -28.06094 -27.73704 -27.08743 -25.39262 -23.95480 -21.59289 -21.46641 -20.68155 -20.20579 -18.41771 -17.84411 -17.59426 -17.32578 -16.92863 -16.53196 -16.40773 -15.85105 -15.56178 -15.53080 -15.08944 -14.85220 -14.61140 -14.25667 -14.22414 -13.91466 -13.57416 -13.51887 -13.08624 -13.02983 -12.83562 -12.71140 -12.34564 -12.29763 -12.18207 -12.13020 -11.97707 -11.61611 -11.37647 -11.30909 -10.85508 -10.59163 -10.40104 -10.29199 -9.71786 -8.98734 -8.17038 -6.26002 1.18665 1.44846 1.46751 1.53989 1.54408 2.22852 2.42264 2.76845 3.16289 3.26148 3.37827 3.53191 3.75786 3.90162 3.98498 4.11288 4.17812 4.22621 4.39760 4.43797 4.45022 4.58545 4.64755 4.68249 4.72829 4.76358 4.79633 4.85775 4.94395 4.99364 5.06214 5.11236 5.20950 5.25107 5.33700 5.49435 5.64522 5.69902 5.79990 6.08727 6.13430 6.36037 6.56073 6.63681 6.91045 7.13682 7.43792 8.93287 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016156 B = 0.004611 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.697419 B = 6070.886447 C = 6781.717276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.191 4.191 3 C 0.150 3.850 4 N -0.608 5.608 5 C 0.136 3.864 6 C -0.084 4.084 7 C -0.136 4.136 8 C 0.515 3.485 9 O -0.579 6.579 10 C 0.085 3.915 11 O -0.386 6.386 12 C 0.080 3.920 13 C 0.028 3.972 14 N -0.527 5.527 15 C 0.213 3.787 16 C -0.517 4.517 17 H 0.065 0.935 18 C 0.005 3.995 19 N -0.934 5.934 20 Si 0.963 3.037 21 H -0.270 1.270 22 H -0.288 1.288 23 H -0.266 1.266 24 C 0.071 3.929 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.037 0.963 40 H 0.004 0.996 41 H -0.035 1.035 42 H 0.263 0.737 43 H 0.061 0.939 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.215 3.355 -13.579 14.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.210 4.210 3 C 0.029 3.971 4 N -0.340 5.340 5 C 0.014 3.986 6 C -0.085 4.085 7 C -0.176 4.176 8 C 0.304 3.696 9 O -0.460 6.460 10 C 0.007 3.993 11 O -0.304 6.304 12 C 0.003 3.997 13 C -0.102 4.102 14 N -0.251 5.251 15 C 0.087 3.913 16 C -0.556 4.556 17 H 0.084 0.916 18 C -0.193 4.193 19 N -0.575 5.575 20 Si 0.788 3.212 21 H -0.196 1.196 22 H -0.214 1.214 23 H -0.191 1.191 24 C -0.057 4.057 25 H 0.130 0.870 26 H 0.127 0.873 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.141 0.859 33 H 0.132 0.868 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.022 0.978 41 H -0.017 1.017 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.845 3.154 -14.410 15.244 hybrid contribution 0.038 -0.337 1.598 1.634 sum 3.882 2.816 -12.812 13.680 Atomic orbital electron populations 1.24081 0.95196 1.03259 0.97464 1.23226 0.96733 0.98414 1.02673 1.20570 0.91847 0.96227 0.88474 1.48496 1.12041 1.60932 1.12495 1.21910 0.96772 0.99719 0.80229 1.20933 0.95274 0.97590 0.94724 1.22385 1.00590 1.01900 0.92725 1.21202 0.82382 0.76014 0.90030 1.90670 1.69476 1.47456 1.38365 1.22400 0.89340 0.86379 1.01164 1.87362 1.50122 1.60743 1.32206 1.23051 1.02475 0.93240 0.80928 1.22405 0.96589 0.91629 0.99560 1.61297 1.37205 1.02538 1.24081 1.19409 0.93292 0.94178 0.84412 1.21411 1.16805 1.11736 1.05612 0.91648 1.25819 0.99895 0.96355 0.97268 1.70072 1.43508 1.26930 1.16990 0.85532 0.79376 0.78972 0.77319 1.19554 1.21401 1.19112 1.20927 0.94916 0.97163 0.92711 0.86982 0.87292 0.88736 0.88183 0.89780 0.92557 0.88968 0.85915 0.86784 0.91698 0.89154 0.89849 0.91020 0.91136 0.94470 0.97782 1.01731 0.92852 0.92008 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 14.32 67.79 0.97 -2.09 16 2 C -0.19 -4.31 9.85 25.65 0.25 -4.06 16 3 C 0.15 3.42 6.37 85.63 0.55 3.97 16 4 N -0.61 -15.90 2.92 -822.39 -2.40 -18.29 16 5 C 0.14 3.73 6.08 86.79 0.53 4.26 16 6 C -0.08 -2.11 0.64 -52.79 -0.03 -2.14 16 7 C -0.14 -3.06 5.78 30.55 0.18 -2.88 16 8 C 0.51 14.50 7.85 87.90 0.69 15.19 16 9 O -0.58 -20.11 17.59 -3.03 -0.05 -20.16 16 10 C 0.08 1.97 5.17 72.41 0.37 2.34 16 11 O -0.39 -10.54 8.68 -143.75 -1.25 -11.79 16 12 C 0.08 2.16 7.02 72.27 0.51 2.67 16 13 C 0.03 0.91 4.82 87.07 0.42 1.33 16 14 N -0.53 -19.87 4.18 -915.17 -3.83 -23.70 16 15 C 0.21 10.39 4.60 85.56 0.39 10.79 16 16 C -0.52 -27.21 8.11 25.60 0.21 -27.00 16 17 H 0.07 3.35 7.60 -2.91 -0.02 3.33 16 18 C 0.00 0.26 5.46 84.65 0.46 0.72 16 19 N -0.93 -54.04 13.29 21.45 0.28 -53.76 16 20 Si 0.96 42.32 29.54 68.60 2.03 44.34 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 C 0.07 2.16 3.76 84.10 0.32 2.48 16 25 H 0.11 1.83 7.84 -2.91 -0.02 1.81 16 26 H 0.11 1.82 8.06 -2.91 -0.02 1.79 16 27 H 0.09 2.36 8.06 -2.91 -0.02 2.34 16 28 H 0.10 1.94 7.79 -2.39 -0.02 1.92 16 29 H 0.08 1.96 7.93 -2.39 -0.02 1.94 16 30 H 0.06 1.75 7.96 -2.39 -0.02 1.73 16 31 H 0.09 2.71 6.61 -2.39 -0.02 2.69 16 32 H 0.12 2.26 7.86 -2.39 -0.02 2.24 16 33 H 0.11 2.42 7.95 -2.39 -0.02 2.40 16 34 H 0.06 1.35 7.15 -2.39 -0.02 1.33 16 35 H 0.09 1.93 7.81 -2.39 -0.02 1.92 16 36 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 38 H 0.07 2.69 6.64 -2.39 -0.02 2.67 16 39 H 0.04 1.11 6.73 -2.39 -0.02 1.09 16 40 H 0.00 0.22 7.80 -2.39 -0.02 0.20 16 41 H -0.04 -1.86 8.11 -2.39 -0.02 -1.88 16 42 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 43 H 0.06 2.01 7.61 -2.39 -0.02 1.99 16 44 H 0.05 1.30 7.41 -2.39 -0.02 1.29 16 Total: -1.00 -64.18 348.84 1.56 -62.61 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.97 Total: 15.18 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 5.81 Total: 5.57 kcal Atomic # 7 Polarization: -89.81 SS G_CDS: -5.94 Total: -95.75 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.30 Total: -31.95 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -64.18 1.56 -62.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.062 kcal (2) G-P(sol) polarization free energy of solvation -64.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds