Wall clock time and date at job start Tue Mar 31 2020 02:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 N 1.46500 * 109.47089 * 124.72256 * 3 2 1 5 5 C 1.46202 * 118.77654 * 89.99867 * 4 3 2 6 6 C 1.52431 * 109.93712 * 162.44443 * 5 4 3 7 7 C 1.53777 * 110.31373 * 285.77599 * 6 5 4 8 8 C 1.54502 * 104.88356 * 240.74070 * 7 6 5 9 9 N 1.48605 * 104.60780 * 23.78200 * 8 7 6 10 10 C 1.46903 * 110.99784 * 201.22009 * 9 8 7 11 11 C 1.52997 * 109.47246 * 290.12364 * 10 9 8 12 12 C 1.50700 * 109.47168 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99758 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99687 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00297 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99778 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47150 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47241 * 119.99718 * 16 14 12 19 19 H 1.48498 * 109.47241 * 240.00268 * 16 14 12 20 20 C 1.48675 * 104.29645 * 320.81689 * 9 8 7 21 21 O 1.42565 * 110.12594 * 47.71104 * 6 5 4 22 22 C 1.43031 * 113.17324 * 293.26618 * 21 6 5 23 23 C 1.33850 * 118.77294 * 269.72926 * 4 3 2 24 24 O 1.21277 * 118.69840 * 2.42587 * 23 4 3 25 25 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 26 26 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 27 27 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 28 28 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 29 29 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 30 30 H 1.08995 * 109.39296 * 282.58642 * 5 4 3 31 31 H 1.08999 * 109.39228 * 42.39980 * 5 4 3 32 32 H 1.09004 * 110.35621 * 359.58794 * 7 6 5 33 33 H 1.09000 * 110.35784 * 121.88652 * 7 6 5 34 34 H 1.08995 * 110.41079 * 142.56423 * 8 7 6 35 35 H 1.09000 * 110.40659 * 264.99757 * 8 7 6 36 36 H 1.09002 * 109.47082 * 50.12725 * 10 9 8 37 37 H 1.09001 * 109.46810 * 170.12431 * 10 9 8 38 38 H 1.09001 * 109.47493 * 300.00723 * 11 10 9 39 39 H 1.09001 * 109.47161 * 60.00283 * 11 10 9 40 40 H 0.96999 * 120.00079 * 179.97438 * 15 14 12 41 41 H 1.08995 * 110.43643 * 280.27278 * 20 9 8 42 42 H 1.09000 * 110.42970 * 157.77536 * 20 9 8 43 43 H 1.09005 * 109.40071 * 168.78173 * 22 21 6 44 44 H 1.09003 * 109.40280 * 288.60413 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3347 1.1353 5 6 4.3458 0.8222 0.9507 6 6 5.2492 1.3284 2.0693 7 6 5.5807 2.8148 1.8564 8 6 7.1184 2.8621 1.7136 9 7 7.4949 1.4973 1.2618 10 6 8.9071 1.2171 1.5537 11 6 9.7947 2.0686 0.6440 12 6 11.2434 1.7816 0.9439 13 1 11.5048 1.0633 1.7068 14 6 12.2350 2.4360 0.2443 15 7 11.9167 3.3111 -0.6844 16 14 14.0307 2.0797 0.6156 17 1 14.1209 1.0642 1.6954 18 1 14.6960 1.5629 -0.6073 19 1 14.7028 3.3290 1.0545 20 6 6.6017 0.5950 2.0354 21 8 4.6176 1.1395 3.3334 22 6 3.4522 1.9503 3.5070 23 6 2.5627 1.8348 2.3013 24 8 1.4112 2.2052 2.3899 25 1 -0.5400 0.9353 -0.0045 26 1 -0.5400 -0.9353 0.0045 27 1 1.8500 -0.9353 0.0046 28 1 2.6252 1.4004 -0.9293 29 1 1.3582 2.1318 0.0846 30 1 4.3264 -0.2675 0.9664 31 1 4.7343 1.1636 -0.0088 32 1 5.1041 3.1833 0.9480 33 1 5.2617 3.4016 2.7178 34 1 7.4084 3.6026 0.9683 35 1 7.5826 3.0861 2.6740 36 1 9.1174 1.4581 2.5957 37 1 9.1121 0.1613 1.3766 38 1 9.5843 1.8276 -0.3981 39 1 9.5897 3.1244 0.8211 40 1 12.6143 3.7717 -1.1763 41 1 6.9845 0.4558 3.0464 42 1 6.5010 -0.3655 1.5301 43 1 2.9101 1.6200 4.3931 44 1 3.7506 2.9912 3.6323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039207.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:14 Heat of formation + Delta-G solvation = -63.899254 kcal Electronic energy + Delta-G solvation = -24235.998176 eV Core-core repulsion = 20767.333947 eV Total energy + Delta-G solvation = -3468.664230 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.25333 -40.14734 -38.12834 -37.15011 -35.44133 -34.38082 -33.24225 -30.92366 -30.43794 -29.20595 -27.22660 -26.41598 -25.78537 -23.46702 -22.31929 -21.61523 -20.89578 -19.64549 -18.66378 -18.52950 -17.92736 -17.15353 -16.85001 -16.68975 -16.43361 -15.99841 -15.69527 -15.38628 -15.08914 -15.01654 -14.55622 -14.37846 -14.21541 -14.06240 -13.83995 -13.54753 -13.12223 -13.04224 -12.77572 -12.73306 -12.46946 -12.36718 -12.30160 -12.22702 -11.95508 -11.72333 -11.46719 -11.28329 -11.21831 -10.64362 -10.53528 -10.28422 -9.87285 -9.42818 -8.18721 -6.29320 1.14491 1.38602 1.41564 1.42244 1.54937 1.93931 2.37246 2.45595 3.15262 3.15347 3.20087 3.45458 3.53177 3.64966 3.92779 4.09148 4.14253 4.18392 4.22984 4.37494 4.45352 4.46360 4.48653 4.55617 4.63114 4.69908 4.72257 4.73839 4.82672 4.96019 4.97489 5.02309 5.10433 5.24110 5.47822 5.58124 5.64038 5.72510 5.78947 5.80933 6.00331 6.08150 6.26288 6.30879 6.88425 6.91275 7.39918 8.93399 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032360 B = 0.002946 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.062960 B = 9502.364359 C = 9815.427551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.184 4.184 3 C 0.133 3.867 4 N -0.595 5.595 5 C 0.104 3.896 6 C 0.103 3.897 7 C -0.142 4.142 8 C 0.038 3.962 9 N -0.514 5.514 10 C 0.069 3.931 11 C 0.038 3.962 12 C -0.542 4.542 13 H 0.060 0.940 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.963 3.037 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.280 1.280 20 C 0.051 3.949 21 O -0.365 6.365 22 C 0.049 3.951 23 C 0.485 3.515 24 O -0.578 6.578 25 H 0.094 0.906 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.025 0.975 37 H 0.070 0.930 38 H -0.005 1.005 39 H -0.008 1.008 40 H 0.263 0.737 41 H 0.058 0.942 42 H 0.107 0.893 43 H 0.146 0.854 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.722 -5.532 4.517 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.203 4.203 3 C 0.011 3.989 4 N -0.326 5.326 5 C -0.018 4.018 6 C 0.063 3.937 7 C -0.180 4.180 8 C -0.090 4.090 9 N -0.239 5.239 10 C -0.059 4.059 11 C 0.001 3.999 12 C -0.581 4.581 13 H 0.078 0.922 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.788 3.212 17 H -0.186 1.186 18 H -0.204 1.204 19 H -0.206 1.206 20 C -0.078 4.078 21 O -0.284 6.284 22 C -0.030 4.030 23 C 0.274 3.726 24 O -0.459 6.459 25 H 0.112 0.888 26 H 0.130 0.870 27 H 0.135 0.865 28 H 0.125 0.875 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.014 0.986 39 H 0.010 0.990 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.125 0.875 43 H 0.164 0.836 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.200 -5.435 4.010 21.299 hybrid contribution 1.161 0.429 0.568 1.362 sum -19.038 -5.006 4.577 20.211 Atomic orbital electron populations 1.24022 0.95936 1.02508 0.98245 1.23261 0.96547 0.98615 1.01888 1.20759 0.92803 0.96380 0.88950 1.47625 1.13398 1.60446 1.11160 1.22174 0.79452 1.00364 0.99807 1.22075 0.92664 0.95398 0.83566 1.22955 0.95518 0.95834 1.03679 1.23021 0.94841 0.92202 0.98923 1.65496 1.03893 1.02781 1.51710 1.22153 0.86398 1.00229 0.97073 1.18860 0.92869 0.93909 0.94289 1.21666 0.92672 1.23658 1.20074 0.92152 1.25924 1.04045 0.94841 0.94815 1.70104 1.34481 1.27834 1.24700 0.85426 0.79221 0.78216 0.78338 1.18551 1.20424 1.20567 1.22968 0.89325 0.97282 0.98185 1.88110 1.40731 1.64418 1.35115 1.22942 0.84928 0.98889 0.96250 1.21312 0.88694 0.76830 0.85782 1.90705 1.19816 1.51047 1.84361 0.88755 0.87017 0.86503 0.87534 0.90460 0.89214 0.87775 0.89603 0.89176 0.91257 0.94188 0.95672 0.91174 0.98627 0.98952 0.92822 0.92377 0.87484 0.83643 0.87688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 14.32 67.78 0.97 -1.79 16 2 C -0.18 -3.12 9.84 25.64 0.25 -2.87 16 3 C 0.13 2.37 5.73 85.63 0.49 2.86 16 4 N -0.59 -11.82 2.79 -829.95 -2.31 -14.13 16 5 C 0.10 1.90 5.13 86.25 0.44 2.34 16 6 C 0.10 2.20 1.03 -10.42 -0.01 2.19 16 7 C -0.14 -3.19 5.65 31.37 0.18 -3.01 16 8 C 0.04 1.16 5.75 86.48 0.50 1.65 16 9 N -0.51 -16.56 5.37 -881.82 -4.74 -21.30 16 10 C 0.07 2.74 4.75 86.30 0.41 3.14 16 11 C 0.04 1.96 5.03 29.85 0.15 2.11 16 12 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16 13 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 14 C 0.00 0.10 5.46 84.66 0.46 0.56 16 15 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 16 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 17 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 C 0.05 1.25 5.78 86.26 0.50 1.75 16 21 O -0.37 -7.81 10.36 -148.98 -1.54 -9.35 16 22 C 0.05 0.91 6.42 71.11 0.46 1.36 16 23 C 0.49 11.15 7.41 87.67 0.65 11.80 16 24 O -0.58 -16.88 16.37 -3.02 -0.05 -16.93 16 25 H 0.09 1.60 7.84 -2.91 -0.02 1.58 16 26 H 0.11 1.47 8.06 -2.91 -0.02 1.45 16 27 H 0.12 1.79 8.06 -2.91 -0.02 1.77 16 28 H 0.11 1.48 7.94 -2.39 -0.02 1.46 16 29 H 0.08 1.59 6.94 -2.39 -0.02 1.57 16 30 H 0.09 1.45 7.93 -2.39 -0.02 1.43 16 31 H 0.10 1.83 7.85 -2.39 -0.02 1.81 16 32 H 0.09 1.85 7.62 -2.38 -0.02 1.83 16 33 H 0.09 1.80 6.16 -2.39 -0.01 1.78 16 34 H 0.07 2.35 7.78 -2.39 -0.02 2.33 16 35 H 0.04 1.25 7.82 -2.39 -0.02 1.24 16 36 H 0.03 0.99 7.88 -2.39 -0.02 0.97 16 37 H 0.07 2.68 8.13 -2.39 -0.02 2.66 16 38 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H -0.01 -0.44 7.26 -2.39 -0.02 -0.45 16 40 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 41 H 0.06 1.50 7.92 -2.39 -0.02 1.48 16 42 H 0.11 2.29 7.70 -2.39 -0.02 2.27 16 43 H 0.15 2.25 8.14 -2.38 -0.02 2.23 16 44 H 0.11 1.68 6.50 -2.39 -0.02 1.67 16 Total: -1.00 -67.71 352.15 0.32 -67.39 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.97 Total: 12.20 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 5.68 Total: -7.82 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -6.77 Total: -91.03 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -1.59 Total: -26.28 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -67.71 0.32 -67.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039207.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.491 kcal (2) G-P(sol) polarization free energy of solvation -67.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds