Wall clock time and date at job start Tue Mar 31 2020 02:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00191 * 2 1 4 4 C 1.50700 * 120.00072 * 180.02562 * 2 1 3 5 5 N 1.46500 * 109.47251 * 93.90148 * 4 2 1 6 6 C 1.34320 * 119.40737 * 277.33284 * 5 4 2 7 7 O 1.21281 * 118.99143 * 2.02476 * 6 5 4 8 8 C 1.50276 * 122.01385 * 182.02597 * 6 5 4 9 9 O 1.42827 * 110.53711 * 341.45236 * 8 6 5 10 10 C 1.43401 * 113.34332 * 51.36471 * 9 8 6 11 11 C 1.45807 * 119.41104 * 97.35419 * 5 4 2 12 12 C 1.52966 * 114.29714 * 31.69911 * 11 5 4 13 13 N 1.47580 * 87.80440 * 271.71001 * 12 11 5 14 14 C 1.46901 * 110.99666 * 221.69456 * 13 12 11 15 15 C 1.53005 * 109.46903 * 170.00535 * 14 13 12 16 16 C 1.50699 * 109.46950 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00366 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00095 * 179.72081 * 16 15 14 19 19 N 1.31513 * 119.99625 * 0.27869 * 18 16 15 20 20 Si 1.86791 * 120.00359 * 180.27259 * 18 16 15 21 21 H 1.48500 * 109.47004 * 60.00171 * 20 18 16 22 22 H 1.48499 * 109.47460 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47574 * 300.00255 * 20 18 16 24 24 C 1.47561 * 87.94942 * 333.43227 * 13 12 11 25 25 H 1.07996 * 120.00334 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.99759 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47352 * 274.78152 * 3 2 1 28 28 H 1.08997 * 109.47170 * 34.77978 * 3 2 1 29 29 H 1.08996 * 109.47276 * 154.78294 * 3 2 1 30 30 H 1.09005 * 109.46615 * 333.90202 * 4 2 1 31 31 H 1.08993 * 109.47175 * 213.90156 * 4 2 1 32 32 H 1.08994 * 109.26531 * 221.18468 * 8 6 5 33 33 H 1.08995 * 109.26411 * 101.72358 * 8 6 5 34 34 H 1.09005 * 109.70127 * 174.87737 * 10 9 8 35 35 H 1.08998 * 109.70876 * 54.26315 * 10 9 8 36 36 H 1.09002 * 113.49400 * 156.97553 * 12 11 5 37 37 H 1.09003 * 113.49580 * 26.44601 * 12 11 5 38 38 H 1.08999 * 109.47489 * 50.00197 * 14 13 12 39 39 H 1.09000 * 109.47436 * 289.99832 * 14 13 12 40 40 H 1.08994 * 109.47149 * 59.99989 * 15 14 13 41 41 H 1.09000 * 109.46979 * 299.99640 * 15 14 13 42 42 H 0.97000 * 119.99897 * 180.02562 * 19 18 16 43 43 H 1.08997 * 113.49780 * 141.29437 * 24 13 12 44 44 H 1.08998 * 113.49907 * 271.82838 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.3891 -1.6804 -1.3788 6 6 1.4654 -2.3046 -2.1280 7 8 0.3672 -2.5106 -1.6565 8 6 1.7512 -2.7557 -3.5327 9 8 2.8917 -2.0733 -4.0558 10 6 4.0356 -2.1344 -3.1932 11 6 3.7100 -1.3701 -1.9123 12 6 4.8307 -1.3933 -0.8714 13 7 4.5348 0.0276 -0.6043 14 6 5.7729 0.8023 -0.4457 15 6 5.4403 2.2955 -0.4200 16 6 6.7105 3.0902 -0.2580 17 1 7.6598 2.5812 -0.1806 18 6 6.6611 4.4674 -0.2138 19 7 5.5050 5.0873 -0.3075 20 14 8.2361 5.4528 -0.0206 21 1 9.1443 5.1628 -1.1592 22 1 7.9140 6.9023 -0.0005 23 1 8.9024 5.0768 1.2521 24 6 4.0228 0.1257 -1.9848 25 1 -0.5400 -0.9352 -0.0004 26 1 -0.5400 0.9354 0.0004 27 1 2.1710 1.6626 -1.0241 28 1 1.5142 2.0418 0.5862 29 1 3.0503 1.1549 0.4378 30 1 1.4458 -2.0814 0.4512 31 1 2.9838 -1.1935 0.5726 32 1 0.8863 -2.5443 -4.1613 33 1 1.9424 -3.8287 -3.5340 34 1 4.8929 -1.6764 -3.6866 35 1 4.2605 -3.1737 -2.9540 36 1 5.8190 -1.5583 -1.3005 37 1 4.6234 -2.0471 -0.0242 38 1 6.4418 0.5933 -1.2805 39 1 6.2595 0.5224 0.4886 40 1 4.7715 2.5045 0.4148 41 1 4.9538 2.5755 -1.3544 42 1 5.4703 6.0561 -0.2768 43 1 3.1350 0.7514 -2.0755 44 1 4.7913 0.3741 -2.7167 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274039342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:52 Heat of formation + Delta-G solvation = -4.243904 kcal Electronic energy + Delta-G solvation = -25402.518671 eV Core-core repulsion = 21936.441292 eV Total energy + Delta-G solvation = -3466.077380 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.64204 -39.21729 -37.76337 -35.79673 -34.12448 -33.04875 -31.11848 -29.24666 -28.41008 -26.97348 -26.12354 -25.76640 -24.80237 -23.19911 -21.23734 -20.25442 -19.09500 -18.05284 -17.44096 -16.90683 -16.46948 -16.07077 -15.53957 -15.23953 -14.95122 -14.65729 -14.48676 -14.40468 -13.83893 -13.62982 -13.51217 -13.07419 -12.80988 -12.50761 -12.38558 -12.12225 -11.67440 -11.44302 -11.31096 -11.13799 -11.09237 -10.93305 -10.86833 -10.64974 -10.58281 -10.51584 -9.96820 -9.63604 -9.40957 -9.18894 -8.73588 -8.65601 -8.44632 -8.32774 -6.04858 -4.08214 2.26010 2.42946 3.04722 3.29212 3.34673 3.35995 3.46535 4.07390 4.16408 4.36448 4.42952 4.53952 4.81604 5.02267 5.11856 5.19235 5.27176 5.31259 5.31501 5.33501 5.45079 5.55746 5.69677 5.76530 5.80424 5.91931 6.02228 6.13249 6.15927 6.31098 6.39759 6.51389 6.61054 6.65571 6.80922 6.94668 7.02884 7.19141 7.33308 7.43654 7.63939 7.77839 7.97762 7.99503 8.34840 8.98423 9.56115 11.06034 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021855 B = 0.004349 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.840450 B = 6436.570807 C = 7142.635221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.129 4.129 3 C -0.123 4.123 4 C 0.151 3.849 5 N -0.564 5.564 6 C 0.487 3.513 7 O -0.538 6.538 8 C 0.049 3.951 9 O -0.366 6.366 10 C 0.066 3.934 11 C 0.099 3.901 12 C -0.009 4.009 13 N -0.461 5.461 14 C 0.026 3.974 15 C 0.032 3.968 16 C -0.526 4.526 17 H 0.053 0.947 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.000 4.000 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.129 0.871 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.031 0.969 39 H 0.065 0.935 40 H 0.026 0.974 41 H 0.015 0.985 42 H 0.261 0.739 43 H 0.096 0.904 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.566 -16.404 -4.516 17.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.130 4.130 3 C -0.179 4.179 4 C 0.030 3.970 5 N -0.295 5.295 6 C 0.275 3.725 7 O -0.415 6.415 8 C -0.031 4.031 9 O -0.283 6.283 10 C -0.012 4.012 11 C 0.011 3.989 12 C -0.139 4.139 13 N -0.183 5.183 14 C -0.102 4.102 15 C -0.005 4.005 16 C -0.565 4.565 17 H 0.071 0.929 18 C -0.141 4.141 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.130 4.130 25 H 0.117 0.883 26 H 0.109 0.891 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.146 0.854 33 H 0.104 0.896 34 H 0.136 0.864 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.049 0.951 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.114 0.886 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.604 -16.024 -3.852 17.407 hybrid contribution 1.497 0.536 -0.305 1.619 sum -4.107 -15.488 -4.157 16.554 Atomic orbital electron populations 1.23801 0.95615 1.01486 1.01585 1.22048 0.95103 0.96333 0.99512 1.21159 1.02190 0.92641 1.01897 1.20628 1.00855 0.93874 0.81669 1.47218 1.11927 1.56592 1.13775 1.21105 0.84559 0.78067 0.88787 1.90710 1.22005 1.56101 1.72731 1.22758 0.90984 0.97728 0.91604 1.88189 1.20277 1.75702 1.44160 1.22962 0.89464 0.99911 0.88819 1.21973 0.84320 0.97865 0.94715 1.24156 0.96815 0.95049 0.97855 1.69104 1.24892 1.01413 1.22864 1.22903 0.89178 0.98220 0.99885 1.19019 0.96935 0.86837 0.97758 1.21124 0.93247 0.91377 1.50739 0.92907 1.24973 0.95993 0.97929 0.95210 1.69952 1.24117 1.08832 1.50033 0.86676 0.83700 0.79060 0.78658 1.20312 1.21263 1.20250 1.24317 1.01964 0.94471 0.92242 0.88276 0.89099 0.92043 0.93285 0.88147 0.90727 0.87738 0.85373 0.89613 0.86386 0.91600 0.90075 0.89425 0.95105 0.91636 0.95599 0.96649 0.92889 0.88561 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.82 13.35 29.02 0.39 -2.43 16 2 C -0.13 -1.99 5.46 -101.07 -0.55 -2.54 16 3 C -0.12 -2.08 8.20 36.01 0.30 -1.79 16 4 C 0.15 2.11 4.70 -5.19 -0.02 2.08 16 5 N -0.56 -7.44 2.68 -161.70 -0.43 -7.87 16 6 C 0.49 6.57 7.56 -11.39 -0.09 6.48 16 7 O -0.54 -8.72 15.12 5.56 0.08 -8.64 16 8 C 0.05 0.50 6.93 35.80 0.25 0.75 16 9 O -0.37 -4.06 10.84 -35.23 -0.38 -4.44 16 10 C 0.07 0.63 6.14 36.99 0.23 0.85 16 11 C 0.10 1.17 1.66 -132.97 -0.22 0.95 16 12 C -0.01 -0.10 6.28 -7.29 -0.05 -0.15 16 13 N -0.46 -7.02 2.32 -244.59 -0.57 -7.59 16 14 C 0.03 0.48 4.76 -3.82 -0.02 0.46 16 15 C 0.03 0.77 4.81 -27.88 -0.13 0.63 16 16 C -0.53 -14.20 9.11 -34.44 -0.31 -14.51 16 17 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 20 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.00 0.00 5.48 -7.29 -0.04 -0.04 16 25 H 0.10 1.53 7.09 -52.49 -0.37 1.16 16 26 H 0.09 1.31 8.05 -52.48 -0.42 0.88 16 27 H 0.06 1.11 6.07 -51.92 -0.32 0.80 16 28 H 0.05 0.83 8.10 -51.93 -0.42 0.41 16 29 H 0.10 1.84 4.84 -51.93 -0.25 1.58 16 30 H 0.07 1.05 7.46 -51.93 -0.39 0.66 16 31 H 0.10 1.44 5.25 -51.93 -0.27 1.17 16 32 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.12 0.96 7.85 -51.93 -0.41 0.56 16 35 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 36 H 0.08 0.83 7.72 -51.93 -0.40 0.43 16 37 H 0.09 0.96 7.17 -51.93 -0.37 0.59 16 38 H 0.03 0.55 7.57 -51.93 -0.39 0.16 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.03 0.68 7.43 -51.93 -0.39 0.29 16 41 H 0.02 0.39 7.66 -51.93 -0.40 0.00 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.10 1.61 5.37 -51.93 -0.28 1.33 16 44 H 0.08 1.16 7.45 -51.93 -0.39 0.77 16 LS Contribution 338.71 15.07 5.10 5.10 Total: -1.00 -30.69 338.71 -7.55 -38.24 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.70 Total: 2.11 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.38 Total: -7.67 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: -0.26 Total: -40.79 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.30 Total: -13.08 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.69 -7.55 -38.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.001 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds