Wall clock time and date at job start Tue Mar 31 2020 02:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99480 * 2 1 4 4 N 1.46503 * 109.46670 * 125.00611 * 3 2 1 5 5 C 1.46271 * 118.71402 * 90.00015 * 4 3 2 6 6 C 1.52563 * 109.56650 * 163.92105 * 5 4 3 7 7 C 1.53386 * 113.83604 * 176.52967 * 6 5 4 8 8 N 1.48062 * 86.02647 * 91.25561 * 7 6 5 9 9 C 1.46893 * 110.99861 * 137.22976 * 8 7 6 10 10 C 1.53009 * 109.47135 * 70.54686 * 9 8 7 11 11 C 1.52994 * 109.47045 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47156 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00120 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00377 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99862 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00219 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46784 * 60.00343 * 16 14 12 18 18 H 1.48501 * 109.46901 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47262 * 299.99900 * 16 14 12 20 20 C 1.48054 * 90.84388 * 24.30127 * 8 7 6 21 21 O 1.42681 * 112.47408 * 45.21743 * 6 5 4 22 22 C 1.43055 * 112.94678 * 295.89677 * 21 6 5 23 23 C 1.33712 * 118.71904 * 269.99894 * 4 3 2 24 24 O 1.21282 * 118.37931 * 3.26058 * 23 4 3 25 25 H 1.08006 * 120.00392 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.99742 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00162 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47696 * 5.01061 * 3 2 1 29 29 H 1.09000 * 109.47195 * 245.00250 * 3 2 1 30 30 H 1.08997 * 109.45817 * 43.88934 * 5 4 3 31 31 H 1.09004 * 109.45799 * 283.94482 * 5 4 3 32 32 H 1.09001 * 113.78355 * 205.53466 * 7 6 5 33 33 H 1.09007 * 113.78108 * 336.97316 * 7 6 5 34 34 H 1.09007 * 109.47224 * 190.54378 * 9 8 7 35 35 H 1.08997 * 109.47643 * 310.54707 * 9 8 7 36 36 H 1.08998 * 109.46995 * 299.99866 * 10 9 8 37 37 H 1.09000 * 109.46782 * 60.00045 * 10 9 8 38 38 H 1.09007 * 109.47506 * 299.99809 * 11 10 9 39 39 H 1.08997 * 109.47452 * 60.00193 * 11 10 9 40 40 H 0.96999 * 119.99929 * 179.97438 * 15 14 12 41 41 H 1.08993 * 113.78984 * 221.42158 * 20 8 7 42 42 H 1.09002 * 113.78491 * 89.97597 * 20 8 7 43 43 H 1.09000 * 109.34644 * 167.53374 * 22 21 6 44 44 H 1.08998 * 109.34591 * 287.08889 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3500 0.8194 0.9382 6 6 5.2441 1.2974 2.0783 7 6 6.6739 0.7455 2.0179 8 7 6.9999 1.9605 1.2370 9 6 8.2791 2.5376 1.6708 10 6 9.4256 1.6242 1.2321 11 6 10.7580 2.2255 1.6833 12 6 11.8872 1.3263 1.2507 13 1 11.6757 0.4165 0.7084 14 6 13.1905 1.6643 1.5479 15 7 13.4481 2.7719 2.2087 16 14 14.5901 0.5492 1.0122 17 1 14.5815 0.4201 -0.4672 18 1 15.8833 1.1324 1.4512 19 1 14.4181 -0.7914 1.6272 20 6 5.8589 2.6831 1.8437 21 8 4.6242 1.1520 3.3552 22 6 3.4564 1.9647 3.5041 23 6 2.5699 1.8238 2.3003 24 8 1.4122 2.1731 2.3929 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0897 29 1 2.6211 1.4028 -0.9314 30 1 4.7445 1.1845 -0.0100 31 1 4.3282 -0.2703 0.9265 32 1 7.1690 0.7004 2.9879 33 1 6.7642 -0.1801 1.4491 34 1 8.4055 3.5217 1.2194 35 1 8.2854 2.6324 2.7566 36 1 9.2992 0.6401 1.6835 37 1 9.4193 1.5294 0.1462 38 1 10.8842 3.2095 1.2316 39 1 10.7646 2.3207 2.7691 40 1 14.3650 3.0095 2.4182 41 1 5.3015 3.2974 1.1367 42 1 6.1122 3.2127 2.7621 43 1 2.9099 1.6519 4.3938 44 1 3.7538 3.0076 3.6135 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274039924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:18 Heat of formation + Delta-G solvation = -18.882059 kcal Electronic energy + Delta-G solvation = -23731.800836 eV Core-core repulsion = 20265.088698 eV Total energy + Delta-G solvation = -3466.712138 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.58166 -39.71266 -37.13004 -36.37338 -34.18507 -33.59377 -32.03840 -29.72058 -28.60606 -27.15143 -26.35161 -25.69363 -24.66897 -22.34340 -20.94281 -20.18728 -20.03645 -18.55626 -18.00542 -17.18310 -16.42325 -16.36921 -15.89508 -15.72163 -15.31694 -14.91249 -14.55512 -14.43601 -14.16430 -13.92567 -13.64160 -13.38469 -13.32725 -12.64644 -12.49160 -12.27130 -12.15026 -11.97794 -11.60203 -11.57172 -11.29182 -10.96420 -10.80395 -10.66699 -10.53063 -10.44413 -9.94658 -9.74792 -9.57992 -9.36011 -9.12805 -9.08273 -8.84287 -8.36262 -6.01562 -4.03977 1.79890 2.21175 2.64156 3.21053 3.32347 3.36769 3.39156 3.79943 4.00187 4.07091 4.34289 4.44775 4.56623 4.75753 4.81066 4.86170 4.98337 5.12213 5.14994 5.20213 5.23622 5.34241 5.39054 5.44574 5.49633 5.51183 5.58696 5.65356 5.77772 5.98072 6.17664 6.26408 6.34033 6.38041 6.55040 6.58586 6.72431 7.02642 7.07981 7.13250 7.64710 7.72712 7.78723 7.98024 8.40815 9.02842 9.60159 11.09801 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034308 B = 0.002602 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.928578 B =10759.284377 C =11178.036051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.177 4.177 3 C 0.137 3.863 4 N -0.599 5.599 5 C 0.116 3.884 6 C 0.062 3.938 7 C 0.033 3.967 8 N -0.472 5.472 9 C 0.024 3.976 10 C -0.104 4.104 11 C 0.022 3.978 12 C -0.520 4.520 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.020 4.020 21 O -0.355 6.355 22 C 0.051 3.949 23 C 0.490 3.510 24 O -0.544 6.544 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.261 0.739 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.130 0.870 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.414 -3.055 -1.935 23.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C 0.015 3.985 4 N -0.332 5.332 5 C -0.007 4.007 6 C 0.021 3.979 7 C -0.096 4.096 8 N -0.196 5.196 9 C -0.104 4.104 10 C -0.142 4.142 11 C -0.015 4.015 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.149 4.149 21 O -0.272 6.272 22 C -0.028 4.028 23 C 0.278 3.722 24 O -0.422 6.422 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.127 0.873 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.147 0.853 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.691 -2.900 -2.363 23.985 hybrid contribution 0.899 -0.344 0.480 1.076 sum -22.792 -3.245 -1.882 23.099 Atomic orbital electron populations 1.23884 0.95860 1.02033 0.98645 1.23190 0.96364 0.98559 1.01523 1.20656 0.92677 0.96557 0.88577 1.47526 1.12991 1.61515 1.11122 1.21809 0.79868 0.99815 0.99217 1.23521 0.93092 0.97557 0.83706 1.23968 0.89482 0.96961 0.99224 1.68615 1.02454 1.03241 1.45257 1.22827 0.89431 0.99886 0.98259 1.21600 0.94490 0.97412 1.00683 1.19066 0.89863 0.96210 0.96410 1.21197 0.91248 1.07405 1.35982 0.92722 1.25032 0.98968 0.95271 0.95233 1.69954 1.19859 1.23602 1.40148 0.86651 0.81385 0.80866 0.79060 1.20215 1.21310 1.20247 1.24517 0.94510 0.95867 0.99975 1.88180 1.40545 1.65522 1.32981 1.22721 0.85689 0.97873 0.96552 1.20925 0.89113 0.77255 0.84951 1.90728 1.18057 1.49772 1.83611 0.88285 0.88374 0.87278 0.89176 0.89335 0.88007 0.90221 0.89235 0.88041 0.90662 0.94176 0.93414 0.92526 0.96600 0.96793 0.92949 0.89137 0.90041 0.85274 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 14.32 29.01 0.42 -0.93 16 2 C -0.18 -1.49 9.84 -36.02 -0.35 -1.85 16 3 C 0.14 1.18 5.71 -5.19 -0.03 1.15 16 4 N -0.60 -5.86 2.82 -176.04 -0.50 -6.36 16 5 C 0.12 1.03 5.79 -4.39 -0.03 1.01 16 6 C 0.06 0.64 1.21 -90.51 -0.11 0.53 16 7 C 0.03 0.38 6.52 -2.99 -0.02 0.36 16 8 N -0.47 -6.20 6.15 -240.94 -1.48 -7.68 16 9 C 0.02 0.38 4.82 -3.82 -0.02 0.36 16 10 C -0.10 -2.05 5.22 -26.73 -0.14 -2.19 16 11 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 12 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 16 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C -0.02 -0.21 6.67 -2.99 -0.02 -0.23 16 21 O -0.35 -3.91 10.66 -35.23 -0.38 -4.29 16 22 C 0.05 0.49 6.67 35.75 0.24 0.73 16 23 C 0.49 5.59 7.57 -11.72 -0.09 5.50 16 24 O -0.54 -7.74 16.33 5.56 0.09 -7.65 16 25 H 0.10 0.80 7.84 -52.48 -0.41 0.39 16 26 H 0.10 0.67 8.06 -52.49 -0.42 0.24 16 27 H 0.11 0.85 8.06 -52.49 -0.42 0.43 16 28 H 0.09 0.86 6.94 -51.93 -0.36 0.50 16 29 H 0.09 0.59 7.96 -51.93 -0.41 0.17 16 30 H 0.10 0.85 7.88 -51.93 -0.41 0.44 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.13 7.78 -51.93 -0.40 0.73 16 33 H 0.10 1.08 8.09 -51.93 -0.42 0.66 16 34 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 35 H 0.04 0.64 7.70 -51.93 -0.40 0.24 16 36 H 0.05 0.92 7.54 -51.93 -0.39 0.53 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 42 H 0.08 0.90 7.79 -51.93 -0.40 0.50 16 43 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.09 0.75 7.92 -51.93 -0.41 0.34 16 LS Contribution 360.53 15.07 5.43 5.43 Total: -1.00 -32.02 360.53 -9.19 -41.21 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -7.37 Total: -2.59 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -0.70 Total: -8.51 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: -1.24 Total: -40.08 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.28 Total: -11.94 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.02 -9.19 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.327 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds