Wall clock time and date at job start Tue Mar 31 2020 02:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99480 * 2 1 4 4 N 1.46503 * 109.46670 * 125.00611 * 3 2 1 5 5 C 1.46271 * 118.71402 * 90.00015 * 4 3 2 6 6 C 1.52563 * 109.56650 * 163.92105 * 5 4 3 7 7 C 1.53386 * 113.83604 * 176.52967 * 6 5 4 8 8 N 1.48062 * 86.02647 * 91.25561 * 7 6 5 9 9 C 1.46893 * 110.99861 * 137.22976 * 8 7 6 10 10 C 1.53009 * 109.47135 * 70.54686 * 9 8 7 11 11 C 1.52994 * 109.47045 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47156 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00120 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00377 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99862 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00219 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46784 * 60.00343 * 16 14 12 18 18 H 1.48501 * 109.46901 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47262 * 299.99900 * 16 14 12 20 20 C 1.48054 * 90.84388 * 24.30127 * 8 7 6 21 21 O 1.42681 * 112.47408 * 45.21743 * 6 5 4 22 22 C 1.43055 * 112.94678 * 295.89677 * 21 6 5 23 23 C 1.33712 * 118.71904 * 269.99894 * 4 3 2 24 24 O 1.21282 * 118.37931 * 3.26058 * 23 4 3 25 25 H 1.08006 * 120.00392 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.99742 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00162 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47696 * 5.01061 * 3 2 1 29 29 H 1.09000 * 109.47195 * 245.00250 * 3 2 1 30 30 H 1.08997 * 109.45817 * 43.88934 * 5 4 3 31 31 H 1.09004 * 109.45799 * 283.94482 * 5 4 3 32 32 H 1.09001 * 113.78355 * 205.53466 * 7 6 5 33 33 H 1.09007 * 113.78108 * 336.97316 * 7 6 5 34 34 H 1.09007 * 109.47224 * 190.54378 * 9 8 7 35 35 H 1.08997 * 109.47643 * 310.54707 * 9 8 7 36 36 H 1.08998 * 109.46995 * 299.99866 * 10 9 8 37 37 H 1.09000 * 109.46782 * 60.00045 * 10 9 8 38 38 H 1.09007 * 109.47506 * 299.99809 * 11 10 9 39 39 H 1.08997 * 109.47452 * 60.00193 * 11 10 9 40 40 H 0.96999 * 119.99929 * 179.97438 * 15 14 12 41 41 H 1.08993 * 113.78984 * 221.42158 * 20 8 7 42 42 H 1.09002 * 113.78491 * 89.97597 * 20 8 7 43 43 H 1.09000 * 109.34644 * 167.53374 * 22 21 6 44 44 H 1.08998 * 109.34591 * 287.08889 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3500 0.8194 0.9382 6 6 5.2441 1.2974 2.0783 7 6 6.6739 0.7455 2.0179 8 7 6.9999 1.9605 1.2370 9 6 8.2791 2.5376 1.6708 10 6 9.4256 1.6242 1.2321 11 6 10.7580 2.2255 1.6833 12 6 11.8872 1.3263 1.2507 13 1 11.6757 0.4165 0.7084 14 6 13.1905 1.6643 1.5479 15 7 13.4481 2.7719 2.2087 16 14 14.5901 0.5492 1.0122 17 1 14.5815 0.4201 -0.4672 18 1 15.8833 1.1324 1.4512 19 1 14.4181 -0.7914 1.6272 20 6 5.8589 2.6831 1.8437 21 8 4.6242 1.1520 3.3552 22 6 3.4564 1.9647 3.5041 23 6 2.5699 1.8238 2.3003 24 8 1.4122 2.1731 2.3929 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0897 29 1 2.6211 1.4028 -0.9314 30 1 4.7445 1.1845 -0.0100 31 1 4.3282 -0.2703 0.9265 32 1 7.1690 0.7004 2.9879 33 1 6.7642 -0.1801 1.4491 34 1 8.4055 3.5217 1.2194 35 1 8.2854 2.6324 2.7566 36 1 9.2992 0.6401 1.6835 37 1 9.4193 1.5294 0.1462 38 1 10.8842 3.2095 1.2316 39 1 10.7646 2.3207 2.7691 40 1 14.3650 3.0095 2.4182 41 1 5.3015 3.2974 1.1367 42 1 6.1122 3.2127 2.7621 43 1 2.9099 1.6519 4.3938 44 1 3.7538 3.0076 3.6135 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:17 Heat of formation + Delta-G solvation = -41.158077 kcal Electronic energy + Delta-G solvation = -23732.766796 eV Core-core repulsion = 20265.088698 eV Total energy + Delta-G solvation = -3467.678098 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.44635 -40.63873 -38.08031 -37.15733 -35.95293 -34.38837 -33.79225 -30.96162 -29.43017 -28.49381 -27.27146 -26.44953 -26.14973 -23.77934 -22.08365 -21.48786 -20.84304 -19.38947 -18.90733 -18.42940 -17.94821 -17.22245 -16.87078 -16.71987 -16.51000 -16.14312 -15.78581 -15.50126 -15.07653 -14.94428 -14.65964 -14.35960 -14.28409 -14.08808 -13.71024 -13.61310 -13.19366 -13.10736 -12.85724 -12.73764 -12.51402 -12.37227 -12.25534 -12.14686 -11.86644 -11.49984 -11.44583 -11.27425 -11.06027 -10.65189 -10.53489 -10.30437 -9.95535 -9.85861 -8.18906 -6.29719 1.13912 1.37057 1.41417 1.44225 1.52071 1.90907 2.37596 2.42327 2.87769 3.14438 3.18164 3.21096 3.55372 3.86151 3.94761 4.04026 4.11802 4.17054 4.22304 4.34115 4.40069 4.46661 4.48450 4.50473 4.63921 4.67651 4.72033 4.74419 4.82170 4.92016 4.97677 5.08032 5.20691 5.24067 5.36238 5.53754 5.64388 5.70412 5.75015 5.81909 5.87300 5.91715 6.24335 6.27202 6.87409 6.89894 7.39572 8.92695 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034308 B = 0.002602 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.928578 B =10759.284377 C =11178.036051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.185 4.185 3 C 0.134 3.866 4 N -0.595 5.595 5 C 0.119 3.881 6 C 0.071 3.929 7 C 0.028 3.972 8 N -0.474 5.474 9 C 0.036 3.964 10 C -0.088 4.088 11 C 0.025 3.975 12 C -0.542 4.542 13 H 0.061 0.939 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.964 3.036 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.266 1.266 20 C -0.017 4.017 21 O -0.365 6.365 22 C 0.052 3.948 23 C 0.485 3.515 24 O -0.578 6.578 25 H 0.094 0.906 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.053 0.947 37 H 0.054 0.946 38 H -0.009 1.009 39 H -0.010 1.010 40 H 0.263 0.737 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.142 0.858 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.822 -4.432 -2.769 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.203 4.203 3 C 0.013 3.987 4 N -0.327 5.327 5 C -0.004 4.004 6 C 0.030 3.970 7 C -0.101 4.101 8 N -0.198 5.198 9 C -0.092 4.092 10 C -0.126 4.126 11 C -0.013 4.013 12 C -0.580 4.580 13 H 0.079 0.921 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.788 3.212 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.191 1.191 20 C -0.146 4.146 21 O -0.283 6.283 22 C -0.027 4.027 23 C 0.273 3.727 24 O -0.459 6.459 25 H 0.112 0.888 26 H 0.129 0.871 27 H 0.135 0.865 28 H 0.095 0.905 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.133 0.867 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.009 0.991 39 H 0.008 0.992 40 H 0.072 0.928 41 H 0.120 0.880 42 H 0.099 0.901 43 H 0.159 0.841 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -24.104 -4.295 -3.216 24.694 hybrid contribution 0.989 0.102 0.752 1.247 sum -23.115 -4.193 -2.463 23.621 Atomic orbital electron populations 1.24020 0.96024 1.02465 0.98294 1.23271 0.96527 0.98707 1.01840 1.20765 0.92659 0.96282 0.89014 1.47593 1.13415 1.60659 1.10990 1.21872 0.79021 1.00564 0.98902 1.23392 0.92756 0.96666 0.84136 1.24031 0.90335 0.96968 0.98786 1.68574 1.01412 1.04152 1.45622 1.22543 0.89922 0.98851 0.97917 1.21321 0.92992 0.97945 1.00323 1.18977 0.92626 0.95063 0.94639 1.21673 0.92392 1.07957 1.35964 0.92122 1.25990 1.01993 0.96796 0.95183 1.70091 1.20562 1.25462 1.41339 0.85517 0.77653 0.78952 0.79041 1.19139 1.20996 1.19109 1.24569 0.93490 0.96443 1.00115 1.88169 1.40942 1.65909 1.33241 1.22828 0.85056 0.98525 0.96316 1.21228 0.88838 0.76908 0.85698 1.90714 1.19463 1.51520 1.84245 0.88772 0.87145 0.86474 0.90504 0.87127 0.86886 0.88918 0.90231 0.86652 0.91169 0.94463 0.92869 0.92726 0.99106 0.99161 0.92823 0.88037 0.90064 0.84074 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 14.32 67.78 0.97 -1.59 16 2 C -0.18 -2.81 9.84 25.65 0.25 -2.56 16 3 C 0.13 2.09 5.71 85.63 0.49 2.58 16 4 N -0.60 -10.50 2.82 -829.86 -2.34 -12.84 16 5 C 0.12 1.80 5.79 86.28 0.50 2.30 16 6 C 0.07 1.32 1.21 -10.65 -0.01 1.31 16 7 C 0.03 0.60 6.52 86.20 0.56 1.16 16 8 N -0.47 -11.63 6.15 -920.47 -5.66 -17.30 16 9 C 0.04 1.14 4.82 86.31 0.42 1.55 16 10 C -0.09 -3.44 5.22 30.60 0.16 -3.28 16 11 C 0.02 1.27 4.97 29.85 0.15 1.42 16 12 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 13 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 14 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 15 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 16 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 C -0.02 -0.35 6.67 86.21 0.58 0.23 16 21 O -0.36 -7.36 10.66 -148.98 -1.59 -8.95 16 22 C 0.05 0.91 6.67 71.07 0.47 1.38 16 23 C 0.48 10.42 7.57 87.65 0.66 11.09 16 24 O -0.58 -16.16 16.33 -3.04 -0.05 -16.21 16 25 H 0.09 1.48 7.84 -2.91 -0.02 1.46 16 26 H 0.11 1.34 8.06 -2.91 -0.02 1.32 16 27 H 0.12 1.58 8.06 -2.91 -0.02 1.56 16 28 H 0.08 1.42 6.94 -2.39 -0.02 1.41 16 29 H 0.11 1.20 7.96 -2.39 -0.02 1.18 16 30 H 0.11 1.52 7.88 -2.39 -0.02 1.50 16 31 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.08 1.91 7.78 -2.39 -0.02 1.90 16 33 H 0.12 2.17 8.09 -2.38 -0.02 2.15 16 34 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.04 1.19 7.70 -2.39 -0.02 1.17 16 36 H 0.05 2.01 7.54 -2.39 -0.02 1.99 16 37 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 38 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 39 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 40 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 41 H 0.10 1.84 8.09 -2.39 -0.02 1.82 16 42 H 0.08 1.67 7.79 -2.39 -0.02 1.65 16 43 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.10 1.55 7.92 -2.39 -0.02 1.53 16 Total: -1.00 -68.75 360.53 -0.48 -69.23 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.96 Total: 10.93 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 5.89 Total: -14.35 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -7.72 Total: -86.51 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -1.64 Total: -25.16 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -68.75 -0.48 -69.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.071 kcal (2) G-P(sol) polarization free energy of solvation -68.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds