Wall clock time and date at job start Tue Mar 31 2020 02:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 N 1.46499 * 109.46992 * 124.99738 * 3 2 1 5 5 C 1.34273 * 119.37694 * 89.99982 * 4 3 2 6 6 O 1.21280 * 118.97294 * 1.94810 * 5 4 3 7 7 C 1.50279 * 122.05666 * 181.96922 * 5 4 3 8 8 O 1.42817 * 110.49686 * 341.59453 * 7 5 4 9 9 C 1.43380 * 113.33776 * 51.30660 * 8 7 5 10 10 C 1.45920 * 119.38100 * 269.72392 * 4 3 2 11 11 C 1.53484 * 113.79528 * 32.97252 * 10 4 3 12 12 N 1.48037 * 86.05347 * 268.88955 * 11 10 4 13 13 C 1.46894 * 111.00265 * 222.70754 * 12 11 10 14 14 C 1.53006 * 109.47113 * 289.44343 * 13 12 11 15 15 C 1.53003 * 109.47197 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.46867 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00431 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99652 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00497 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00297 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47021 * 89.99614 * 20 18 16 22 22 H 1.48494 * 109.47463 * 210.00404 * 20 18 16 23 23 H 1.48501 * 109.46624 * 330.00164 * 20 18 16 24 24 C 1.48043 * 90.83620 * 335.63280 * 12 11 10 25 25 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 27 27 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 29 29 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 30 30 H 1.09001 * 109.27244 * 101.86355 * 7 5 4 31 31 H 1.09006 * 109.26911 * 221.33248 * 7 5 4 32 32 H 1.09001 * 109.70566 * 54.06690 * 9 8 7 33 33 H 1.09003 * 109.70722 * 174.64016 * 9 8 7 34 34 H 1.08993 * 113.77726 * 23.17938 * 11 10 4 35 35 H 1.09005 * 113.77412 * 154.60623 * 11 10 4 36 36 H 1.08996 * 109.47334 * 49.44045 * 13 12 11 37 37 H 1.09003 * 109.47388 * 169.44118 * 13 12 11 38 38 H 1.08999 * 109.46784 * 299.99516 * 14 13 12 39 39 H 1.09000 * 109.46734 * 59.99890 * 14 13 12 40 40 H 1.09006 * 109.46973 * 300.00007 * 15 14 13 41 41 H 1.09003 * 109.47147 * 59.99871 * 15 14 13 42 42 H 0.96995 * 120.00553 * 180.02562 * 19 18 16 43 43 H 1.09003 * 113.77771 * 270.08264 * 24 12 11 44 44 H 1.08997 * 113.78365 * 138.65167 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.2420 0.8648 0.9691 6 8 4.5815 0.4633 -0.1238 7 6 5.2314 0.8234 2.0994 8 8 4.8238 1.6970 3.1531 9 6 3.4683 1.4884 3.5715 10 6 2.5480 1.8714 2.4120 11 6 1.0615 1.6252 2.7040 12 7 0.8222 2.9330 2.0528 13 6 -0.1615 3.7234 2.8047 14 6 -1.5471 3.0928 2.6512 15 6 -2.5717 3.9157 3.4349 16 6 -3.9364 3.2949 3.2831 17 1 -4.0606 2.4026 2.6877 18 6 -5.0264 3.8657 3.9053 19 7 -4.8752 4.9522 4.6309 20 14 -6.7181 3.0960 3.7179 21 1 -6.9328 2.1030 4.8009 22 1 -7.7559 4.1545 3.8038 23 1 -6.8102 2.4184 2.3997 24 6 2.2025 3.3663 2.3667 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 2.6213 1.4026 -0.9314 29 1 1.3585 2.1317 0.0896 30 1 5.2982 -0.1951 2.4820 31 1 6.2098 1.1341 1.7326 32 1 3.3211 0.4401 3.8315 33 1 3.2498 2.1156 4.4358 34 1 0.6409 0.7797 2.1599 35 1 0.8187 1.6124 3.7666 36 1 0.1151 3.7402 3.8589 37 1 -0.1811 4.7423 2.4179 38 1 -1.8238 3.0760 1.5970 39 1 -1.5275 2.0739 3.0380 40 1 -2.2947 3.9321 4.4890 41 1 -2.5914 4.9347 3.0485 42 1 -5.6419 5.3535 5.0689 43 1 2.2973 3.8687 3.3294 44 1 2.6894 3.9056 1.5542 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040075.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:44 Heat of formation + Delta-G solvation = -15.755893 kcal Electronic energy + Delta-G solvation = -24563.996417 eV Core-core repulsion = 21097.419840 eV Total energy + Delta-G solvation = -3466.576577 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.69635 -39.32854 -37.85499 -35.73541 -34.21034 -33.09447 -31.86629 -30.00355 -28.56823 -27.22283 -26.40193 -25.13100 -24.47994 -22.27797 -21.06894 -20.19913 -19.89361 -18.72706 -17.86120 -17.04873 -16.47587 -16.18429 -15.86955 -15.38404 -15.22238 -14.90095 -14.76165 -14.40361 -14.21190 -13.97594 -13.59360 -13.33302 -12.82985 -12.58531 -12.37829 -12.30110 -11.81070 -11.65224 -11.54061 -11.37011 -11.23083 -11.10743 -10.88455 -10.74441 -10.58123 -10.51215 -9.78258 -9.76318 -9.40890 -9.29637 -9.10427 -8.89947 -8.67025 -8.38054 -6.03232 -4.05571 2.04967 2.24877 2.77090 3.29401 3.30805 3.36044 3.39389 3.78452 3.97287 4.19136 4.33817 4.43271 4.66818 4.83179 4.98162 4.99989 5.06179 5.19617 5.20688 5.24392 5.32752 5.39336 5.44919 5.52170 5.58957 5.72229 5.76453 5.88887 5.94291 6.15637 6.18048 6.36713 6.44496 6.58019 6.62100 6.72198 6.74410 7.07199 7.12903 7.21977 7.63334 7.77147 7.81378 7.96458 8.39378 9.01535 9.58812 11.08123 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025266 B = 0.003406 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.957259 B = 8218.728697 C = 8906.896302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.175 4.175 3 C 0.130 3.870 4 N -0.568 5.568 5 C 0.487 3.513 6 O -0.541 6.541 7 C 0.048 3.952 8 O -0.366 6.366 9 C 0.061 3.939 10 C 0.104 3.896 11 C -0.002 4.002 12 N -0.474 5.474 13 C 0.021 3.979 14 C -0.102 4.102 15 C 0.022 3.978 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.000 4.000 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.130 0.870 32 H 0.068 0.932 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.046 0.954 40 H 0.013 0.987 41 H 0.015 0.985 42 H 0.260 0.740 43 H 0.083 0.917 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.708 -7.891 -3.094 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.194 4.194 3 C 0.009 3.991 4 N -0.299 5.299 5 C 0.275 3.725 6 O -0.419 6.419 7 C -0.031 4.031 8 O -0.284 6.284 9 C -0.017 4.017 10 C 0.016 3.984 11 C -0.131 4.131 12 N -0.197 5.197 13 C -0.107 4.107 14 C -0.140 4.140 15 C -0.015 4.015 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.130 4.130 25 H 0.126 0.874 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.104 0.896 29 H 0.133 0.867 30 H 0.106 0.894 31 H 0.148 0.852 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.031 0.969 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.101 0.899 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 18.669 -7.778 -4.160 20.648 hybrid contribution -1.113 -0.511 0.812 1.469 sum 17.556 -8.289 -3.348 19.701 Atomic orbital electron populations 1.24012 0.95683 1.02612 0.98191 1.23144 0.96077 0.98426 1.01740 1.20862 0.92334 0.97176 0.88695 1.47233 1.11528 1.60003 1.11147 1.21159 0.83093 0.77518 0.90769 1.90736 1.77493 1.47588 1.26070 1.22773 0.98040 0.96590 0.85724 1.88170 1.28527 1.59082 1.52645 1.23097 0.80572 1.02407 0.95594 1.22433 0.95742 0.95672 0.84531 1.24406 0.91923 0.96562 1.00238 1.68575 1.02626 1.02629 1.45843 1.22828 0.94152 0.98273 0.95402 1.21579 0.92161 0.99139 1.01153 1.19069 0.92553 0.95094 0.94823 1.21229 0.92784 1.11251 1.30468 0.92714 1.25022 0.99151 0.94978 0.95302 1.69959 1.30667 1.20252 1.32679 0.86610 0.84057 0.78930 0.78515 1.20698 1.21220 1.19840 1.24391 0.91555 0.94913 1.02105 0.87363 0.88509 0.88077 0.89585 0.86687 0.89401 0.85232 0.91335 0.86329 0.87713 0.89744 0.94348 0.90780 0.92681 0.93571 0.96861 0.96616 0.93007 0.89904 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 12.85 29.02 0.37 -1.52 16 2 C -0.17 -2.02 8.66 -36.02 -0.31 -2.33 16 3 C 0.13 1.57 5.15 -5.19 -0.03 1.55 16 4 N -0.57 -6.50 2.64 -163.40 -0.43 -6.93 16 5 C 0.49 5.81 7.64 -11.42 -0.09 5.72 16 6 O -0.54 -8.17 16.45 5.56 0.09 -8.08 16 7 C 0.05 0.42 6.94 35.80 0.25 0.67 16 8 O -0.37 -3.42 10.84 -35.23 -0.38 -3.80 16 9 C 0.06 0.50 6.10 37.11 0.23 0.73 16 10 C 0.10 1.05 1.55 -135.09 -0.21 0.84 16 11 C 0.00 -0.02 5.85 -2.95 -0.02 -0.04 16 12 N -0.47 -6.08 4.35 -240.35 -1.05 -7.13 16 13 C 0.02 0.33 4.82 -3.82 -0.02 0.31 16 14 C -0.10 -1.98 5.22 -26.73 -0.14 -2.11 16 15 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 16 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 20 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 24 C 0.00 0.00 7.11 -2.94 -0.02 -0.02 16 25 H 0.11 1.33 7.84 -52.48 -0.41 0.92 16 26 H 0.10 0.99 8.06 -52.49 -0.42 0.57 16 27 H 0.10 1.19 8.06 -52.49 -0.42 0.77 16 28 H 0.09 1.12 7.30 -51.93 -0.38 0.74 16 29 H 0.12 1.46 5.67 -51.93 -0.29 1.16 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.49 8.13 -51.93 -0.42 0.06 16 33 H 0.12 0.80 7.87 -51.93 -0.41 0.39 16 34 H 0.10 1.26 4.95 -51.93 -0.26 1.00 16 35 H 0.08 0.91 7.73 -51.93 -0.40 0.51 16 36 H 0.04 0.58 7.70 -51.93 -0.40 0.18 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.87 7.54 -51.93 -0.39 0.48 16 40 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.08 0.81 7.56 -51.93 -0.39 0.42 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -31.50 351.31 -8.40 -39.90 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -7.10 Total: -0.78 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -0.53 Total: -9.00 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: -0.74 Total: -39.90 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.29 Total: -11.87 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.50 -8.40 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040075.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.145 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds