Wall clock time and date at job start Tue Mar 31 2020 03:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47327 * 2 1 4 4 C 1.47196 * 109.47020 * 120.00073 * 2 1 3 5 5 N 2.60800 * 109.47100 * 120.00124 * 2 1 3 6 6 C 1.52999 * 109.46796 * 240.00054 * 2 1 3 7 7 N 1.46502 * 109.47250 * 65.00317 * 6 2 1 8 8 C 1.46498 * 119.99623 * 269.99622 * 7 6 2 9 9 C 1.34774 * 120.00262 * 89.99999 * 7 6 2 10 10 O 1.21587 * 119.99614 * 359.97438 * 9 7 6 11 11 N 1.34771 * 119.99982 * 179.72490 * 9 7 6 12 12 C 1.46498 * 119.99951 * 179.97438 * 11 9 7 13 13 C 1.53036 * 109.46249 * 275.02555 * 12 11 9 14 14 C 1.53198 * 109.31532 * 178.60162 * 13 12 11 15 15 N 1.46918 * 108.76322 * 54.65507 * 14 13 12 16 16 C 1.36938 * 120.62875 * 126.41193 * 15 14 13 17 17 H 1.08004 * 119.99823 * 331.81480 * 16 15 14 18 18 C 1.38811 * 120.00190 * 151.82686 * 16 15 14 19 19 N 1.31618 * 119.99920 * 343.06533 * 18 16 15 20 20 Si 1.86798 * 120.00285 * 163.07985 * 18 16 15 21 21 H 1.48497 * 109.47511 * 59.98931 * 20 18 16 22 22 H 1.48498 * 109.47419 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46864 * 299.99099 * 20 18 16 24 24 C 1.46927 * 118.74234 * 306.38386 * 15 14 13 25 25 C 1.53041 * 109.46055 * 154.96915 * 12 11 9 26 26 H 1.08997 * 109.47327 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47367 * 300.00379 * 1 2 3 28 28 H 1.09006 * 109.47235 * 59.99858 * 1 2 3 29 29 H 1.08998 * 109.47357 * 304.99983 * 6 2 1 30 30 H 1.09006 * 109.46716 * 185.00268 * 6 2 1 31 31 H 1.09003 * 109.47278 * 269.99963 * 8 7 6 32 32 H 1.09002 * 109.47641 * 30.00024 * 8 7 6 33 33 H 1.08998 * 109.46975 * 150.00405 * 8 7 6 34 34 H 0.96998 * 120.00391 * 359.97438 * 11 9 7 35 35 H 1.09004 * 109.45985 * 34.99889 * 12 11 9 36 36 H 1.09003 * 109.50109 * 298.56765 * 13 12 11 37 37 H 1.09007 * 109.49501 * 58.66448 * 13 12 11 38 38 H 1.09005 * 109.59240 * 294.87040 * 14 13 12 39 39 H 1.09004 * 109.70380 * 174.51085 * 14 13 12 40 40 H 0.97003 * 120.00244 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.58388 * 293.82279 * 24 15 14 42 42 H 1.08998 * 109.70272 * 173.46773 * 24 15 14 43 43 H 1.08991 * 109.50250 * 301.34073 * 25 12 11 44 44 H 1.09003 * 109.49657 * 61.40656 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6939 1.2018 5 7 2.3993 -1.2295 2.1294 6 6 2.0399 -0.7212 -1.2493 7 7 1.6524 0.0354 -2.4424 8 6 0.3745 -0.2423 -3.1028 9 6 2.4715 0.9869 -2.9325 10 8 3.5318 1.2176 -2.3842 11 7 2.1174 1.6791 -4.0334 12 6 3.0075 2.7137 -4.5658 13 6 2.7524 4.0325 -3.8326 14 6 3.7088 5.1030 -4.3676 15 7 3.5576 5.1851 -5.8267 16 6 3.2960 6.3839 -6.4347 17 1 2.7644 7.1565 -5.8988 18 6 3.7136 6.6061 -7.7397 19 7 4.6299 5.8300 -8.2785 20 14 2.9755 8.0068 -8.7309 21 1 3.2448 9.2953 -8.0437 22 1 3.5862 8.0310 -10.0843 23 1 1.5089 7.8078 -8.8527 24 6 3.6931 3.9567 -6.6213 25 6 2.7371 2.8989 -6.0607 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.6053 -1.7198 -1.2952 30 1 3.1263 -0.7995 -1.2056 31 1 0.5170 -1.0127 -3.8607 32 1 -0.3485 -0.5886 -2.3642 33 1 0.0042 0.6677 -3.5749 34 1 1.2733 1.4923 -4.4732 35 1 4.0444 2.4113 -4.4191 36 1 1.7225 4.3483 -3.9995 37 1 2.9224 3.8939 -2.7648 38 1 4.7354 4.8320 -4.1213 39 1 3.4681 6.0675 -3.9204 40 1 4.9221 5.9855 -9.1904 41 1 4.7185 3.5923 -6.5587 42 1 3.4412 4.1623 -7.6616 43 1 2.8962 1.9535 -6.5791 44 1 1.7073 3.2250 -6.2065 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322566739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:38 Heat of formation + Delta-G solvation = 21.629825 kcal Electronic energy + Delta-G solvation = -24021.159388 eV Core-core repulsion = 20588.496729 eV Total energy + Delta-G solvation = -3432.662659 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.41808 -38.10829 -37.22141 -35.83115 -34.53144 -33.33175 -31.89289 -30.10660 -29.35018 -28.26594 -26.03999 -24.88105 -23.66669 -22.23921 -21.75001 -19.90575 -19.30531 -18.02240 -17.97958 -16.79312 -16.37847 -15.78081 -15.20304 -14.91778 -14.54774 -14.29714 -14.01198 -13.71124 -13.55599 -13.41777 -13.23686 -13.16782 -12.96967 -12.82836 -12.61189 -12.45225 -12.32281 -11.86900 -11.65544 -11.45753 -11.30466 -11.10773 -10.82918 -10.72030 -10.50440 -10.28524 -10.06272 -10.02769 -9.76006 -9.54638 -9.01183 -8.60296 -8.44108 -6.68573 -5.79969 -3.22160 2.32274 2.51734 2.65745 3.24908 3.37709 3.43636 3.44489 3.66115 3.98534 4.42965 4.49069 4.53183 4.75399 4.78936 5.02672 5.14417 5.29624 5.32949 5.33889 5.36806 5.43778 5.51293 5.59648 5.61493 5.70371 5.89172 6.07137 6.18924 6.28419 6.34870 6.48960 6.57103 6.60061 6.78022 6.83233 6.97243 7.04001 7.27688 7.31607 7.61445 7.78541 7.99470 8.44372 8.65824 9.20485 9.83746 10.40836 11.28978 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.034555 B = 0.002946 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.105329 B = 9502.093333 C = 9637.545899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.016 4.016 3 H 0.120 0.880 4 C 0.217 3.783 5 N -0.436 5.436 6 C 0.145 3.855 7 N -0.635 5.635 8 C 0.072 3.928 9 C 0.703 3.297 10 O -0.585 6.585 11 N -0.736 5.736 12 C 0.167 3.833 13 C -0.138 4.138 14 C 0.147 3.853 15 N -0.593 5.593 16 C -0.253 4.253 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.175 3.825 25 C -0.146 4.146 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.392 0.608 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.020 0.980 39 H 0.055 0.945 40 H 0.255 0.745 41 H 0.021 0.979 42 H 0.091 0.909 43 H 0.053 0.947 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.892 -13.628 9.588 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.039 4.039 3 H 0.138 0.862 4 C -0.102 4.102 5 N -0.111 5.111 6 C 0.019 3.981 7 N -0.373 5.373 8 C -0.071 4.071 9 C 0.404 3.596 10 O -0.462 6.462 11 N -0.391 5.391 12 C 0.063 3.937 13 C -0.179 4.179 14 C 0.020 3.980 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.733 3.267 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.211 1.211 24 C 0.048 3.952 25 C -0.186 4.186 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.226 0.774 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.039 0.961 42 H 0.109 0.891 43 H 0.072 0.928 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.433 -14.218 11.186 20.883 hybrid contribution -1.000 0.829 -1.114 1.711 sum -11.433 -13.388 10.072 20.283 Atomic orbital electron populations 1.21933 0.91955 1.02985 1.03668 1.19381 0.97298 1.00477 0.86743 0.86195 1.28995 0.93228 0.93564 0.94414 1.81231 1.08846 1.09651 1.11410 1.21151 1.02230 0.93370 0.81342 1.46939 1.20665 1.39850 1.29872 1.21897 0.85294 1.01695 0.98219 1.15972 0.83423 0.79054 0.81159 1.90938 1.23502 1.69987 1.61806 1.45698 1.24334 1.40087 1.28943 1.20941 0.93631 0.85668 0.93457 1.22385 1.00964 0.95811 0.98730 1.20878 0.95265 0.95892 0.85935 1.44085 1.82942 1.04390 1.00122 1.19149 1.29431 0.92889 0.96769 0.91698 1.25052 0.96879 0.98344 0.99368 1.70014 1.29171 1.40784 1.14818 0.86367 0.78863 0.82130 0.79377 1.20890 1.21658 1.21069 1.20735 0.94014 0.83433 0.97007 1.22540 1.02302 1.00466 0.93276 0.91734 0.91661 0.90144 0.89667 0.88774 0.92493 0.90318 0.91141 0.77354 0.90014 0.92475 0.92688 0.96178 0.92619 0.93542 0.96096 0.89060 0.92789 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 8.14 37.16 0.30 -0.40 16 2 C -0.02 -0.11 2.97 -93.41 -0.28 -0.39 16 3 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.22 2.09 14.65 -20.76 -0.30 1.79 16 5 N -0.44 -5.46 18.54 42.15 0.78 -4.67 16 6 C 0.14 1.11 4.85 -4.04 -0.02 1.09 16 7 N -0.64 -5.53 2.70 -187.35 -0.51 -6.03 16 8 C 0.07 0.37 9.27 59.85 0.55 0.92 16 9 C 0.70 9.32 8.24 -86.93 -0.72 8.60 16 10 O -0.58 -10.24 15.58 5.29 0.08 -10.15 16 11 N -0.74 -9.47 4.94 -58.64 -0.29 -9.76 16 12 C 0.17 2.77 2.42 -67.89 -0.16 2.60 16 13 C -0.14 -2.43 5.65 -26.61 -0.15 -2.58 16 14 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 15 N -0.59 -14.50 2.99 -172.32 -0.52 -15.02 16 16 C -0.25 -6.79 9.58 -15.06 -0.14 -6.94 16 17 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 18 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -25.75 11.19 55.49 0.62 -25.13 16 20 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.17 4.00 5.30 -3.71 -0.02 3.98 16 25 C -0.15 -2.55 5.55 -26.61 -0.15 -2.70 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.34 5.89 -51.93 -0.31 0.04 16 29 H 0.09 0.44 8.07 -51.93 -0.42 0.02 16 30 H 0.09 0.93 7.42 -51.93 -0.39 0.55 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.23 5.98 -51.93 -0.31 -0.08 16 33 H 0.07 0.34 6.37 -51.93 -0.33 0.01 16 34 H 0.39 3.95 6.34 -40.82 -0.26 3.69 16 35 H 0.08 1.56 7.57 -51.93 -0.39 1.17 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 2.33 6.07 -51.93 -0.31 2.01 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -32.98 354.17 -7.62 -40.60 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.91 Total: -0.41 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -1.20 Total: 9.03 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 0.09 Total: -60.61 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.98 -7.62 -40.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322566739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.233 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds