Wall clock time and date at job start Tue Mar 31 2020 03:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47327 * 2 1 4 4 C 1.47196 * 109.47020 * 120.00073 * 2 1 3 5 5 N 2.60800 * 109.47100 * 120.00124 * 2 1 3 6 6 C 1.52999 * 109.46796 * 240.00054 * 2 1 3 7 7 N 1.46502 * 109.47250 * 65.00317 * 6 2 1 8 8 C 1.46498 * 119.99623 * 269.99622 * 7 6 2 9 9 C 1.34774 * 120.00262 * 89.99999 * 7 6 2 10 10 O 1.21587 * 119.99614 * 359.97438 * 9 7 6 11 11 N 1.34771 * 119.99982 * 179.72490 * 9 7 6 12 12 C 1.46498 * 119.99951 * 179.97438 * 11 9 7 13 13 C 1.53036 * 109.46249 * 275.02555 * 12 11 9 14 14 C 1.53198 * 109.31532 * 178.60162 * 13 12 11 15 15 N 1.46918 * 108.76322 * 54.65507 * 14 13 12 16 16 C 1.36938 * 120.62875 * 126.41193 * 15 14 13 17 17 H 1.08004 * 119.99823 * 331.81480 * 16 15 14 18 18 C 1.38811 * 120.00190 * 151.82686 * 16 15 14 19 19 N 1.31618 * 119.99920 * 343.06533 * 18 16 15 20 20 Si 1.86798 * 120.00285 * 163.07985 * 18 16 15 21 21 H 1.48497 * 109.47511 * 59.98931 * 20 18 16 22 22 H 1.48498 * 109.47419 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46864 * 299.99099 * 20 18 16 24 24 C 1.46927 * 118.74234 * 306.38386 * 15 14 13 25 25 C 1.53041 * 109.46055 * 154.96915 * 12 11 9 26 26 H 1.08997 * 109.47327 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47367 * 300.00379 * 1 2 3 28 28 H 1.09006 * 109.47235 * 59.99858 * 1 2 3 29 29 H 1.08998 * 109.47357 * 304.99983 * 6 2 1 30 30 H 1.09006 * 109.46716 * 185.00268 * 6 2 1 31 31 H 1.09003 * 109.47278 * 269.99963 * 8 7 6 32 32 H 1.09002 * 109.47641 * 30.00024 * 8 7 6 33 33 H 1.08998 * 109.46975 * 150.00405 * 8 7 6 34 34 H 0.96998 * 120.00391 * 359.97438 * 11 9 7 35 35 H 1.09004 * 109.45985 * 34.99889 * 12 11 9 36 36 H 1.09003 * 109.50109 * 298.56765 * 13 12 11 37 37 H 1.09007 * 109.49501 * 58.66448 * 13 12 11 38 38 H 1.09005 * 109.59240 * 294.87040 * 14 13 12 39 39 H 1.09004 * 109.70380 * 174.51085 * 14 13 12 40 40 H 0.97003 * 120.00244 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.58388 * 293.82279 * 24 15 14 42 42 H 1.08998 * 109.70272 * 173.46773 * 24 15 14 43 43 H 1.08991 * 109.50250 * 301.34073 * 25 12 11 44 44 H 1.09003 * 109.49657 * 61.40656 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6939 1.2018 5 7 2.3993 -1.2295 2.1294 6 6 2.0399 -0.7212 -1.2493 7 7 1.6524 0.0354 -2.4424 8 6 0.3745 -0.2423 -3.1028 9 6 2.4715 0.9869 -2.9325 10 8 3.5318 1.2176 -2.3842 11 7 2.1174 1.6791 -4.0334 12 6 3.0075 2.7137 -4.5658 13 6 2.7524 4.0325 -3.8326 14 6 3.7088 5.1030 -4.3676 15 7 3.5576 5.1851 -5.8267 16 6 3.2960 6.3839 -6.4347 17 1 2.7644 7.1565 -5.8988 18 6 3.7136 6.6061 -7.7397 19 7 4.6299 5.8300 -8.2785 20 14 2.9755 8.0068 -8.7309 21 1 3.2448 9.2953 -8.0437 22 1 3.5862 8.0310 -10.0843 23 1 1.5089 7.8078 -8.8527 24 6 3.6931 3.9567 -6.6213 25 6 2.7371 2.8989 -6.0607 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.6053 -1.7198 -1.2952 30 1 3.1263 -0.7995 -1.2056 31 1 0.5170 -1.0127 -3.8607 32 1 -0.3485 -0.5886 -2.3642 33 1 0.0042 0.6677 -3.5749 34 1 1.2733 1.4923 -4.4732 35 1 4.0444 2.4113 -4.4191 36 1 1.7225 4.3483 -3.9995 37 1 2.9224 3.8939 -2.7648 38 1 4.7354 4.8320 -4.1213 39 1 3.4681 6.0675 -3.9204 40 1 4.9221 5.9855 -9.1904 41 1 4.7185 3.5923 -6.5587 42 1 3.4412 4.1623 -7.6616 43 1 2.8962 1.9535 -6.5791 44 1 1.7073 3.2250 -6.2065 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322566739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:37 Heat of formation + Delta-G solvation = 0.442826 kcal Electronic energy + Delta-G solvation = -24022.078125 eV Core-core repulsion = 20588.496729 eV Total energy + Delta-G solvation = -3433.581397 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.40038 -39.33115 -38.33938 -36.75111 -35.96252 -34.35560 -33.40282 -31.69257 -30.99016 -28.77625 -27.19307 -26.16245 -24.55760 -23.85144 -23.25504 -21.13174 -20.66692 -19.11050 -18.68170 -18.42779 -17.47155 -16.78746 -16.57973 -15.95429 -15.86947 -15.40665 -15.30551 -15.11111 -14.78460 -14.68211 -14.28432 -14.12567 -13.93611 -13.83620 -13.73728 -13.33227 -13.17477 -13.09103 -12.95512 -12.53424 -12.51051 -12.33384 -12.24831 -12.14117 -11.99616 -11.87111 -11.82023 -11.50233 -11.31137 -11.08747 -10.51979 -10.05696 -9.47210 -8.67473 -7.84975 -5.30592 1.50617 1.51646 1.53090 1.59997 1.74618 1.82214 2.23711 2.54699 2.87249 3.18521 3.31682 3.70647 3.87057 3.94786 3.97263 4.12914 4.25654 4.38563 4.40618 4.51586 4.60413 4.70426 4.71008 4.85572 4.86535 4.90745 4.94008 5.00820 5.07750 5.10870 5.13757 5.21638 5.34977 5.36398 5.51395 5.57981 5.67071 5.68390 5.74785 5.99329 6.41977 6.51888 7.07224 7.17597 7.66376 7.87540 8.40315 9.21964 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.034555 B = 0.002946 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.105329 B = 9502.093333 C = 9637.545899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.008 4.008 3 H 0.108 0.892 4 C 0.242 3.758 5 N -0.488 5.488 6 C 0.143 3.857 7 N -0.623 5.623 8 C 0.063 3.937 9 C 0.699 3.301 10 O -0.633 6.633 11 N -0.724 5.724 12 C 0.180 3.820 13 C -0.121 4.121 14 C 0.144 3.856 15 N -0.609 5.609 16 C -0.264 4.264 17 H 0.068 0.932 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.274 1.274 24 C 0.178 3.822 25 C -0.127 4.127 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.409 0.591 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.004 0.996 39 H 0.056 0.944 40 H 0.250 0.750 41 H -0.008 1.008 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.074 -14.563 9.711 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 H 0.125 0.875 4 C -0.076 4.076 5 N -0.165 5.165 6 C 0.018 3.982 7 N -0.359 5.359 8 C -0.078 4.078 9 C 0.400 3.600 10 O -0.514 6.514 11 N -0.380 5.380 12 C 0.075 3.925 13 C -0.162 4.162 14 C 0.018 3.982 15 N -0.332 5.332 16 C -0.394 4.394 17 H 0.085 0.915 18 C -0.245 4.245 19 N -0.582 5.582 20 Si 0.797 3.203 21 H -0.204 1.204 22 H -0.222 1.222 23 H -0.200 1.200 24 C 0.052 3.948 25 C -0.166 4.166 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.138 0.862 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.096 0.904 34 H 0.248 0.752 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.022 0.978 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.010 0.990 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.691 -15.197 11.331 23.383 hybrid contribution 0.027 1.098 -1.106 1.559 sum -13.664 -14.099 10.225 22.136 Atomic orbital electron populations 1.21960 0.89350 1.04426 1.04331 1.19446 0.99186 0.99189 0.85337 0.87465 1.29406 0.91739 0.92363 0.94098 1.81255 1.10651 1.11443 1.13147 1.21254 1.01067 0.94816 0.81065 1.46901 1.21169 1.38125 1.29690 1.22231 0.83730 1.02588 0.99299 1.16137 0.83317 0.79657 0.80889 1.90917 1.25868 1.71535 1.63117 1.45249 1.24438 1.39230 1.29116 1.20465 0.93000 0.86223 0.92843 1.22163 1.00254 0.94985 0.98768 1.20976 0.95470 0.97360 0.84441 1.44348 1.83132 1.04335 1.01424 1.19494 1.28920 0.93793 0.97158 0.91453 1.25816 0.97374 1.00938 1.00396 1.70181 1.30653 1.42637 1.14766 0.85326 0.78327 0.79292 0.77384 1.20434 1.22194 1.19963 1.20561 0.93858 0.84487 0.95884 1.22239 1.01168 0.99486 0.93749 0.89904 0.91605 0.88918 0.86229 0.91494 0.91286 0.87361 0.90422 0.75231 0.92879 0.91344 0.92176 0.97813 0.92522 0.94046 0.99012 0.91891 0.90605 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.14 71.98 0.59 -0.25 16 2 C -0.01 -0.10 2.97 -12.60 -0.04 -0.14 16 3 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 4 C 0.24 4.42 14.65 89.44 1.31 5.73 16 5 N -0.49 -12.09 18.54 20.01 0.37 -11.72 16 6 C 0.14 1.86 4.85 86.38 0.42 2.28 16 7 N -0.62 -8.99 2.70 -864.92 -2.33 -11.32 16 8 C 0.06 0.35 9.27 127.77 1.18 1.53 16 9 C 0.70 17.32 8.24 179.06 1.48 18.79 16 10 O -0.63 -22.11 15.58 -3.99 -0.06 -22.17 16 11 N -0.72 -16.91 4.94 -457.70 -2.26 -19.17 16 12 C 0.18 5.80 2.42 45.02 0.11 5.91 16 13 C -0.12 -4.13 5.65 30.67 0.17 -3.96 16 14 C 0.14 6.12 6.52 86.37 0.56 6.68 16 15 N -0.61 -30.23 2.99 -699.09 -2.09 -32.32 16 16 C -0.26 -14.26 9.58 84.03 0.81 -13.45 16 17 H 0.07 3.54 7.89 -2.91 -0.02 3.51 16 18 C -0.05 -2.74 4.92 84.86 0.42 -2.32 16 19 N -0.94 -54.76 11.19 21.65 0.24 -54.52 16 20 Si 0.97 43.84 29.59 68.60 2.03 45.87 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 C 0.18 8.34 5.30 86.36 0.46 8.80 16 25 C -0.13 -4.27 5.55 30.67 0.17 -4.10 16 26 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.09 0.36 5.89 -2.38 -0.01 0.35 16 29 H 0.12 0.77 8.07 -2.39 -0.02 0.75 16 30 H 0.07 1.28 7.42 -2.38 -0.02 1.27 16 31 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.11 0.02 5.98 -2.39 -0.01 0.00 16 33 H 0.08 0.37 6.37 -2.39 -0.02 0.35 16 34 H 0.41 6.72 6.34 -92.71 -0.59 6.13 16 35 H 0.05 2.05 7.57 -2.39 -0.02 2.04 16 36 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 38 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 39 H 0.06 2.35 7.93 -2.38 -0.02 2.33 16 40 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 41 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 42 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 43 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -74.95 354.17 3.94 -71.01 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.41 Total: 8.85 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: 7.63 Total: 25.49 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -6.07 Total: -129.05 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.06 Total: -22.17 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -74.95 3.94 -71.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322566739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.453 kcal (2) G-P(sol) polarization free energy of solvation -74.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds