Wall clock time and date at job start Tue Mar 31 2020 03:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47142 * 239.99837 * 3 2 1 5 5 H 1.48498 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99771 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 163.08901 * 7 2 1 9 9 N 1.36934 * 120.00015 * 343.08772 * 7 2 1 10 10 C 1.46928 * 120.63265 * 331.83027 * 9 7 2 11 11 C 1.53201 * 108.89275 * 233.51651 * 10 9 7 12 12 C 1.53071 * 109.29371 * 305.57634 * 11 10 9 13 13 N 1.46903 * 109.45056 * 181.24459 * 12 11 10 14 14 C 1.46905 * 110.99864 * 84.78784 * 13 12 11 15 15 C 1.53005 * 109.46810 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.46659 * 60.00537 * 15 14 13 17 17 O 1.42896 * 109.47469 * 300.00272 * 15 14 13 18 18 C 1.52993 * 109.46778 * 179.97438 * 15 14 13 19 19 N 1.46499 * 109.46950 * 185.00168 * 18 15 14 20 20 C 1.34957 * 126.03595 * 124.71771 * 19 18 15 21 21 C 1.35315 * 107.74075 * 179.83804 * 20 19 18 22 22 C 1.39865 * 107.92566 * 0.42676 * 21 20 19 23 23 N 1.30842 * 108.20203 * 359.73472 * 22 21 20 24 24 C 1.53045 * 109.66047 * 61.15498 * 12 11 10 25 25 C 1.46932 * 120.63392 * 151.80754 * 9 7 2 26 26 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.58613 * 353.36947 * 10 9 7 28 28 H 1.08995 * 109.59058 * 113.65812 * 10 9 7 29 29 H 1.09002 * 109.49837 * 65.38934 * 11 10 9 30 30 H 1.09003 * 109.49550 * 185.48233 * 11 10 9 31 31 H 1.09001 * 109.33784 * 301.13345 * 12 11 10 32 32 H 1.00901 * 110.99759 * 208.74148 * 13 12 11 33 33 H 1.08993 * 109.46934 * 300.00085 * 14 13 12 34 34 H 1.08999 * 109.46588 * 60.00259 * 14 13 12 35 35 H 0.96710 * 113.99687 * 300.00042 * 17 15 14 36 36 H 1.09006 * 109.47480 * 305.00331 * 18 15 14 37 37 H 1.09001 * 109.47310 * 65.00369 * 18 15 14 38 38 H 1.07994 * 126.12299 * 0.02562 * 20 19 18 39 39 H 1.08010 * 126.03511 * 180.15832 * 21 20 19 40 40 H 1.08004 * 125.90141 * 179.76068 * 22 21 20 41 41 H 1.09002 * 109.49555 * 178.74703 * 24 12 11 42 42 H 1.08999 * 109.49562 * 58.65207 * 24 12 11 43 43 H 1.08996 * 109.59017 * 246.20330 * 25 9 7 44 44 H 1.09009 * 109.58200 * 6.48305 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3701 -2.3622 0.3460 10 6 0.2261 -2.3400 1.2678 11 6 0.4939 -3.3200 2.4145 12 6 0.8120 -4.7009 1.8358 13 7 1.0402 -5.6505 2.9332 14 6 -0.2288 -6.2099 3.4177 15 6 0.0490 -7.1925 4.5572 16 1 0.5510 -6.6711 5.3722 17 8 0.8848 -8.2495 4.0816 18 6 -1.2726 -7.7746 5.0622 19 7 -1.0183 -8.6227 6.2294 20 6 -1.5947 -8.4966 7.4431 21 6 -1.0964 -9.4706 8.2394 22 6 -0.1771 -10.2114 7.4895 23 7 -0.1294 -9.7040 6.2844 24 6 2.0674 -4.6174 0.9645 25 6 1.8137 -3.6528 -0.1983 26 1 -0.4850 0.8400 -0.0004 27 1 0.0993 -1.3344 1.6687 28 1 -0.6775 -2.6380 0.7360 29 1 1.3427 -2.9695 3.0019 30 1 -0.3882 -3.3843 3.0516 31 1 -0.0283 -5.0408 1.2304 32 1 1.6742 -6.3831 2.6514 33 1 -0.8664 -5.4036 3.7801 34 1 -0.7305 -6.7316 2.6028 35 1 0.5006 -8.7576 3.3539 36 1 -1.9438 -6.9627 5.3424 37 1 -1.7323 -8.3702 4.2735 38 1 -2.3252 -7.7536 7.7269 39 1 -1.3587 -9.6427 9.2729 40 1 0.3945 -11.0565 7.8438 41 1 2.3041 -5.6063 0.5718 42 1 2.9024 -4.2538 1.5634 43 1 1.0401 -4.0603 -0.8491 44 1 2.7332 -3.5129 -0.7669 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327977174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:15 Heat of formation + Delta-G solvation = 52.019074 kcal Electronic energy + Delta-G solvation = -23535.023708 eV Core-core repulsion = 20103.678825 eV Total energy + Delta-G solvation = -3431.344883 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.29178 -38.64229 -37.44556 -34.74814 -33.46279 -32.21580 -30.42683 -30.08737 -29.84958 -28.48846 -25.62496 -24.16002 -22.45970 -21.85347 -21.31621 -21.11868 -20.80862 -19.07259 -17.66845 -16.76376 -16.62049 -16.23834 -15.47035 -15.00811 -14.71730 -14.47044 -14.21652 -13.98551 -13.81179 -13.48288 -13.37592 -13.15162 -12.99242 -12.59073 -12.37800 -12.16148 -12.05080 -11.42615 -11.32977 -11.03287 -10.86116 -10.76408 -10.70138 -10.41110 -10.22752 -10.18563 -9.90939 -9.59076 -9.56449 -9.46431 -8.76738 -8.47886 -8.19195 -6.66806 -5.78375 -3.20633 1.73026 2.27941 2.69775 3.39233 3.44622 3.46642 3.82749 4.19360 4.46853 4.50560 4.59244 4.69703 4.78957 4.87341 4.93567 5.11015 5.32198 5.37767 5.41979 5.45061 5.56763 5.60140 5.69557 5.81076 5.82931 5.88852 6.12508 6.33134 6.39577 6.46922 6.56258 6.62517 6.74361 6.77224 6.78705 6.98860 7.31390 7.39372 7.46731 7.55745 7.61063 7.68454 7.80553 8.46268 9.22295 9.85640 10.42503 11.30380 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.035586 B = 0.002571 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.645534 B =10887.216123 C =11260.707820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.171 3.829 11 C -0.125 4.125 12 C 0.097 3.903 13 N -0.682 5.682 14 C 0.031 3.969 15 C 0.102 3.898 16 H 0.109 0.891 17 O -0.537 6.537 18 C 0.099 3.901 19 N -0.368 5.368 20 C 0.047 3.953 21 C -0.277 4.277 22 C 0.032 3.968 23 N -0.269 5.269 24 C -0.133 4.133 25 C 0.148 3.852 26 H 0.254 0.746 27 H 0.088 0.912 28 H 0.014 0.986 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.034 0.966 32 H 0.342 0.658 33 H 0.082 0.918 34 H 0.031 0.969 35 H 0.369 0.631 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.171 0.829 39 H 0.145 0.855 40 H 0.180 0.820 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.015 0.985 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.023 -17.891 12.328 22.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.044 3.956 11 C -0.165 4.165 12 C -0.012 4.012 13 N -0.314 5.314 14 C -0.100 4.100 15 C 0.041 3.959 16 H 0.127 0.873 17 O -0.340 6.340 18 C -0.023 4.023 19 N -0.150 5.150 20 C -0.099 4.099 21 C -0.306 4.306 22 C -0.154 4.154 23 N -0.090 5.090 24 C -0.172 4.172 25 C 0.021 3.979 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.032 0.968 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.161 0.839 33 H 0.100 0.900 34 H 0.049 0.951 35 H 0.215 0.785 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.189 0.811 39 H 0.162 0.838 40 H 0.197 0.803 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.033 0.967 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.219 -17.006 11.965 21.217 hybrid contribution -0.786 0.200 -0.214 0.839 sum -5.006 -16.806 11.751 21.108 Atomic orbital electron populations 1.70022 1.05275 1.25580 1.54044 1.25044 0.95297 0.98424 1.00924 0.86360 0.78909 0.83289 0.78165 1.20883 1.21655 1.20994 1.19151 0.92529 0.84851 1.41586 0.91750 1.44046 1.35885 1.01495 1.50003 1.20790 0.88470 0.98291 0.88018 1.22212 1.00126 0.94513 0.99600 1.21506 0.96957 0.93064 0.89672 1.60503 1.11535 1.20096 1.39256 1.22570 0.93572 0.97509 0.96333 1.22233 0.89468 0.87334 0.96818 0.87298 1.86732 1.45387 1.46665 1.55263 1.22514 0.99536 0.93524 0.86737 1.48628 1.32274 1.24711 1.09413 1.22601 1.00169 1.01091 0.86070 1.21499 1.06029 1.01207 1.01880 1.23949 0.99204 1.00598 0.91672 1.77554 1.10786 1.00020 1.20598 1.22201 0.97467 0.98955 0.98612 1.20860 0.97630 0.86903 0.92533 0.93622 0.89409 0.96798 0.92092 0.93847 0.94799 0.83899 0.89955 0.95129 0.78506 0.87592 0.89486 0.81148 0.83766 0.80296 0.93472 0.91448 0.96735 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.31 11.20 55.49 0.62 -25.69 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.81 29.59 -169.99 -5.03 16.78 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.25 -6.96 9.58 -15.06 -0.14 -7.11 16 8 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -14.93 3.00 -172.31 -0.52 -15.45 16 10 C 0.17 4.08 5.30 -3.71 -0.02 4.06 16 11 C -0.12 -2.41 5.60 -26.59 -0.15 -2.56 16 12 C 0.10 1.61 2.45 -67.65 -0.17 1.45 16 13 N -0.68 -9.50 6.31 -106.66 -0.67 -10.18 16 14 C 0.03 0.33 5.19 -3.82 -0.02 0.31 16 15 C 0.10 1.01 3.45 -26.73 -0.09 0.92 16 16 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 17 O -0.54 -5.98 11.71 -35.23 -0.41 -6.40 16 18 C 0.10 0.78 6.18 -4.05 -0.03 0.76 16 19 N -0.37 -3.72 3.68 -61.37 -0.23 -3.95 16 20 C 0.05 0.40 11.45 -17.22 -0.20 0.20 16 21 C -0.28 -2.44 10.80 -40.02 -0.43 -2.87 16 22 C 0.03 0.33 12.03 -17.36 -0.21 0.12 16 23 N -0.27 -3.26 11.56 30.63 0.35 -2.91 16 24 C -0.13 -2.32 5.37 -26.61 -0.14 -2.46 16 25 C 0.15 3.11 6.52 -3.71 -0.02 3.09 16 26 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.04 0.76 7.42 -51.93 -0.39 0.38 16 31 H 0.03 0.58 7.80 -51.93 -0.40 0.17 16 32 H 0.34 4.60 7.72 -39.29 -0.30 4.30 16 33 H 0.08 0.90 7.41 -51.93 -0.38 0.51 16 34 H 0.03 0.30 8.05 -51.93 -0.42 -0.11 16 35 H 0.37 3.01 9.05 45.56 0.41 3.42 16 36 H 0.11 0.59 8.07 -51.93 -0.42 0.17 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.18 1.28 8.06 -52.48 -0.42 0.86 16 41 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 1.15 7.93 -51.92 -0.41 0.74 16 LS Contribution 354.02 15.07 5.33 5.33 Total: -1.00 -32.86 354.02 -8.66 -41.52 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.40 Total: 5.08 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -1.71 Total: -4.14 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.44 Total: -58.17 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.41 Total: -6.40 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.86 -8.66 -41.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327977174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.540 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds