Wall clock time and date at job start Tue Mar 31 2020 03:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47251 * 240.00210 * 3 2 1 5 5 H 1.48500 * 109.47337 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47092 * 120.00752 * 3 2 1 7 7 C 1.37882 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99849 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00055 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47031 * 180.02562 * 9 7 2 11 11 C 1.46955 * 111.00069 * 170.00090 * 10 9 7 12 12 C 1.53058 * 109.36629 * 183.18766 * 11 10 9 13 13 N 1.46961 * 109.36068 * 301.59814 * 12 11 10 14 14 C 1.46903 * 110.99706 * 183.18859 * 13 12 11 15 15 C 1.53000 * 109.47204 * 75.83240 * 14 13 12 16 16 H 1.08998 * 109.47283 * 300.52449 * 15 14 13 17 17 O 1.42896 * 109.46724 * 60.52363 * 15 14 13 18 18 C 1.53000 * 109.47020 * 180.52053 * 15 14 13 19 19 N 1.46496 * 109.47056 * 175.00105 * 18 15 14 20 20 C 1.34951 * 126.03769 * 124.99771 * 19 18 15 21 21 C 1.35316 * 107.74723 * 179.97438 * 20 19 18 22 22 C 1.39874 * 107.92171 * 0.02562 * 21 20 19 23 23 N 1.30841 * 108.19649 * 359.73165 * 22 21 20 24 24 C 1.46955 * 110.88090 * 59.32048 * 13 12 11 25 25 C 1.46965 * 111.00140 * 293.80056 * 10 9 7 26 26 H 0.97007 * 119.99906 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.46824 * 60.00361 * 9 7 2 28 28 H 1.08998 * 109.46956 * 300.00595 * 9 7 2 29 29 H 1.09002 * 109.49137 * 63.21712 * 11 10 9 30 30 H 1.09003 * 109.48906 * 303.14939 * 11 10 9 31 31 H 1.08993 * 109.48690 * 181.63194 * 12 11 10 32 32 H 1.09001 * 109.48523 * 61.56517 * 12 11 10 33 33 H 1.08998 * 109.47087 * 315.83400 * 14 13 12 34 34 H 1.08993 * 109.46853 * 195.83583 * 14 13 12 35 35 H 0.96710 * 114.00474 * 60.00166 * 17 15 14 36 36 H 1.08992 * 109.47241 * 295.00659 * 18 15 14 37 37 H 1.09002 * 109.46607 * 55.00553 * 18 15 14 38 38 H 1.08000 * 126.12009 * 0.02562 * 20 19 18 39 39 H 1.07999 * 126.04221 * 179.97438 * 21 20 19 40 40 H 1.07992 * 125.89750 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.48682 * 60.64397 * 24 13 12 42 42 H 1.09001 * 109.49096 * 180.70939 * 24 13 12 43 43 H 1.08998 * 109.48181 * 296.77855 * 25 10 9 44 44 H 1.08999 * 109.48568 * 56.84478 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6157 -0.0005 11 6 1.5207 -4.8940 0.2377 12 6 2.5562 -6.0188 0.3093 13 7 3.3192 -6.0593 -0.9461 14 6 4.2738 -7.1759 -0.9461 15 6 3.5242 -8.4877 -1.1875 16 1 2.7835 -8.6329 -0.4011 17 8 2.8683 -8.4350 -2.4559 18 6 4.5167 -9.6520 -1.1746 19 7 3.7867 -10.9172 -1.2862 20 6 3.9939 -11.8741 -2.2150 21 6 3.1194 -12.8784 -1.9746 22 6 2.3512 -12.5229 -0.8611 23 7 2.7540 -11.3499 -0.4444 24 6 4.0040 -4.7810 -1.1843 25 6 2.9686 -3.6563 -1.2559 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6245 -2.5570 0.8896 29 1 0.8251 -5.0915 -0.5779 30 1 0.9732 -4.8434 1.1789 31 1 2.0483 -6.9718 0.4570 32 1 3.2353 -5.8354 1.1419 33 1 4.7818 -7.2197 0.0173 34 1 5.0081 -7.0261 -1.7375 35 1 3.4679 -8.3072 -3.2038 36 1 5.2035 -9.5534 -2.0151 37 1 5.0802 -9.6388 -0.2416 38 1 4.7269 -11.8440 -3.0076 39 1 3.0299 -13.7926 -2.5427 40 1 1.5644 -13.1161 -0.4192 41 1 4.6995 -4.5836 -0.3686 42 1 4.5515 -4.8316 -2.1254 43 1 2.2894 -3.8397 -2.0884 44 1 3.4765 -2.7033 -1.4036 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349657984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:09 Heat of formation + Delta-G solvation = 18.878438 kcal Electronic energy + Delta-G solvation = -23622.169904 eV Core-core repulsion = 20189.387935 eV Total energy + Delta-G solvation = -3432.781968 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.96505 -40.36138 -38.56726 -36.30168 -34.53721 -34.09015 -31.91209 -31.38494 -30.75202 -29.30137 -27.30872 -25.46156 -24.47464 -23.50397 -22.55692 -21.83981 -21.49794 -20.65433 -18.52320 -18.45762 -17.26398 -17.10581 -16.88098 -16.36071 -16.18284 -15.93759 -15.74680 -15.38218 -15.07383 -14.88656 -14.79984 -14.44014 -14.13322 -13.92016 -13.62211 -13.45539 -13.08723 -12.96890 -12.78910 -12.63753 -12.51408 -12.27767 -12.26660 -12.11773 -11.82632 -11.54252 -11.46451 -11.31010 -11.07592 -10.63246 -10.25903 -9.43339 -9.26246 -9.06797 -8.22081 -6.33469 1.06993 1.40193 1.44254 1.52199 1.68049 2.02300 2.39119 2.79306 3.09746 3.26555 3.43834 3.62248 3.89632 3.93994 4.02033 4.08495 4.17068 4.19796 4.30678 4.34827 4.43271 4.45780 4.49946 4.63572 4.67544 4.73665 4.80494 4.93429 4.95529 4.99411 5.03342 5.07099 5.20408 5.21050 5.24237 5.61161 5.80144 5.97893 6.02394 6.10114 6.24031 6.32553 6.57572 6.82083 6.83077 6.94421 7.36409 8.89312 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.044315 B = 0.002571 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.682603 B =10888.731149 C =11186.813583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.002 4.002 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.066 0.934 9 C 0.209 3.791 10 N -0.543 5.543 11 C 0.056 3.944 12 C 0.074 3.926 13 N -0.541 5.541 14 C 0.029 3.971 15 C 0.112 3.888 16 H 0.075 0.925 17 O -0.562 6.562 18 C 0.101 3.899 19 N -0.370 5.370 20 C 0.057 3.943 21 C -0.293 4.293 22 C 0.027 3.973 23 N -0.343 5.343 24 C 0.073 3.927 25 C 0.067 3.933 26 H 0.265 0.735 27 H -0.044 1.044 28 H 0.000 1.000 29 H 0.013 0.987 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.108 0.892 35 H 0.384 0.616 36 H 0.140 0.860 37 H 0.101 0.899 38 H 0.209 0.791 39 H 0.164 0.836 40 H 0.195 0.805 41 H 0.041 0.959 42 H 0.102 0.898 43 H 0.011 0.989 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.440 -24.130 -6.000 28.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.562 4.562 8 H 0.084 0.916 9 C 0.082 3.918 10 N -0.267 5.267 11 C -0.073 4.073 12 C -0.054 4.054 13 N -0.265 5.265 14 C -0.099 4.099 15 C 0.052 3.948 16 H 0.093 0.907 17 O -0.369 6.369 18 C -0.020 4.020 19 N -0.153 5.153 20 C -0.089 4.089 21 C -0.322 4.322 22 C -0.158 4.158 23 N -0.165 5.165 24 C -0.055 4.055 25 C -0.062 4.062 26 H 0.074 0.926 27 H -0.026 1.026 28 H 0.018 0.982 29 H 0.032 0.968 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.126 0.874 35 H 0.232 0.768 36 H 0.158 0.842 37 H 0.119 0.881 38 H 0.226 0.774 39 H 0.182 0.818 40 H 0.212 0.788 41 H 0.059 0.941 42 H 0.120 0.880 43 H 0.029 0.971 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.688 -23.039 -4.751 27.217 hybrid contribution -0.010 0.497 -0.643 0.812 sum 13.678 -22.543 -5.393 26.914 Atomic orbital electron populations 1.70101 1.07935 1.28067 1.51580 1.26005 0.95786 1.03495 0.94665 0.85357 0.78073 0.77452 0.79251 1.18911 1.20915 1.19187 1.21403 0.93640 0.90810 1.50359 0.91599 1.19347 0.90144 0.89223 0.93061 1.62249 1.27133 1.02726 1.34642 1.22115 0.95778 0.89902 0.99529 1.22017 0.95552 0.97246 0.90600 1.61962 1.26673 1.03519 1.34385 1.22780 0.94025 0.90016 1.03081 1.22009 0.94335 0.91624 0.86860 0.90664 1.86701 1.38752 1.95493 1.15939 1.22637 0.93454 0.79220 1.06730 1.48719 1.27816 1.16040 1.22684 1.23198 1.01335 0.89064 0.95334 1.21850 1.02824 1.03910 1.03590 1.24321 1.00692 0.93683 0.97103 1.77282 1.05498 1.15372 1.18359 1.22130 0.94385 0.87297 1.01693 1.22016 0.95797 0.98862 0.89508 0.92639 1.02591 0.98151 0.96824 0.91529 0.90126 0.93995 0.92465 0.87354 0.76759 0.84233 0.88073 0.77392 0.81801 0.78789 0.94112 0.87975 0.97070 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.90 13.29 21.45 0.28 -57.62 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.52 -30.41 8.47 25.60 0.22 -30.20 16 8 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 9 C 0.21 11.75 4.72 85.56 0.40 12.16 16 10 N -0.54 -24.88 4.70 -900.28 -4.23 -29.11 16 11 C 0.06 2.21 5.61 86.31 0.48 2.70 16 12 C 0.07 2.28 5.43 86.31 0.47 2.75 16 13 N -0.54 -14.52 4.52 -895.72 -4.05 -18.57 16 14 C 0.03 0.50 4.66 86.30 0.40 0.90 16 15 C 0.11 2.03 3.15 30.59 0.10 2.12 16 16 H 0.08 1.92 6.79 -2.39 -0.02 1.90 16 17 O -0.56 -12.11 13.16 -148.98 -1.96 -14.07 16 18 C 0.10 1.18 6.15 86.38 0.53 1.71 16 19 N -0.37 -6.63 3.62 -348.07 -1.26 -7.89 16 20 C 0.06 0.77 11.45 83.54 0.96 1.73 16 21 C -0.29 -4.57 10.80 21.99 0.24 -4.33 16 22 C 0.03 0.54 12.03 85.24 1.03 1.56 16 23 N -0.34 -8.38 12.35 -57.02 -0.70 -9.09 16 24 C 0.07 2.07 5.56 86.31 0.48 2.55 16 25 C 0.07 2.66 5.43 86.31 0.47 3.13 16 26 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 27 H -0.04 -2.70 8.12 -2.39 -0.02 -2.72 16 28 H 0.00 0.02 8.03 -2.39 -0.02 0.00 16 29 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 2.65 8.07 -2.39 -0.02 2.63 16 31 H 0.08 2.33 6.79 -2.39 -0.02 2.31 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 0.89 7.99 -2.39 -0.02 0.87 16 34 H 0.11 1.18 7.84 -2.39 -0.02 1.16 16 35 H 0.38 4.81 9.05 -74.05 -0.67 4.14 16 36 H 0.14 0.46 8.07 -2.39 -0.02 0.44 16 37 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.21 0.94 8.06 -2.91 -0.02 0.92 16 39 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.20 2.83 8.06 -2.91 -0.02 2.80 16 41 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.10 2.28 8.00 -2.39 -0.02 2.26 16 43 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.07 3.02 6.79 -2.39 -0.02 3.01 16 Total: -1.00 -78.94 357.26 -3.35 -82.29 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.31 Total: 10.23 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 6.23 Total: -2.85 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -9.96 Total: -122.27 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -1.96 Total: -14.07 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -78.94 -3.35 -82.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349657984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.164 kcal (2) G-P(sol) polarization free energy of solvation -78.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds