Wall clock time and date at job start Tue Mar 31 2020 03:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00051 * 2 1 4 4 H 1.48502 * 109.47201 * 270.00024 * 3 2 1 5 5 H 1.48504 * 109.47233 * 30.00397 * 3 2 1 6 6 H 1.48496 * 109.47194 * 150.00130 * 3 2 1 7 7 C 1.37879 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99864 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.46956 * 111.00041 * 170.00344 * 10 9 7 12 12 C 1.53051 * 109.36372 * 183.18994 * 11 10 9 13 13 N 1.46951 * 109.36605 * 301.59766 * 12 11 10 14 14 C 1.46897 * 111.00221 * 183.19030 * 13 12 11 15 15 C 1.52992 * 109.47647 * 170.00106 * 14 13 12 16 16 H 1.09004 * 109.47256 * 59.99776 * 15 14 13 17 17 O 1.42903 * 109.47063 * 299.99964 * 15 14 13 18 18 C 1.53002 * 109.47564 * 179.97438 * 15 14 13 19 19 N 1.46500 * 109.47148 * 184.99803 * 18 15 14 20 20 C 1.34946 * 126.03644 * 124.95038 * 19 18 15 21 21 C 1.35316 * 107.74870 * 180.02562 * 20 19 18 22 22 C 1.39875 * 107.91722 * 0.02562 * 21 20 19 23 23 N 1.30829 * 108.20298 * 0.02562 * 22 21 20 24 24 C 1.46956 * 110.87907 * 59.32132 * 13 12 11 25 25 C 1.46961 * 111.00215 * 293.80280 * 10 9 7 26 26 H 0.96998 * 119.99989 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46751 * 60.00803 * 9 7 2 28 28 H 1.08995 * 109.47426 * 300.00537 * 9 7 2 29 29 H 1.08994 * 109.49124 * 63.22217 * 11 10 9 30 30 H 1.09000 * 109.48552 * 303.15965 * 11 10 9 31 31 H 1.09004 * 109.48774 * 181.63137 * 12 11 10 32 32 H 1.09002 * 109.49068 * 61.56757 * 12 11 10 33 33 H 1.09004 * 109.46975 * 49.99711 * 14 13 12 34 34 H 1.09005 * 109.47318 * 290.00239 * 14 13 12 35 35 H 0.96700 * 113.99890 * 299.99883 * 17 15 14 36 36 H 1.08996 * 109.46833 * 64.99795 * 18 15 14 37 37 H 1.08993 * 109.46978 * 305.00271 * 18 15 14 38 38 H 1.07999 * 126.12479 * 0.04451 * 20 19 18 39 39 H 1.07999 * 126.03957 * 180.26092 * 21 20 19 40 40 H 1.08004 * 125.89587 * 180.02562 * 22 21 20 41 41 H 1.09003 * 109.49168 * 60.65002 * 24 13 12 42 42 H 1.09000 * 109.48552 * 180.71034 * 24 13 12 43 43 H 1.08993 * 109.49190 * 296.77984 * 25 10 9 44 44 H 1.09001 * 109.48727 * 56.82623 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1941 -0.0011 10 7 4.0012 -2.5790 -0.0022 11 6 5.4505 -2.6250 -0.2410 12 6 5.9067 -4.0842 -0.3138 13 7 5.5608 -4.7661 0.9410 14 6 6.0504 -6.1511 0.9399 15 6 5.8965 -6.7477 2.3403 16 1 4.8450 -6.7343 2.6274 17 8 6.6549 -5.9751 3.2732 18 6 6.4059 -8.1904 2.3390 19 7 6.1495 -8.8000 3.6462 20 6 5.4714 -9.9453 3.8687 21 6 5.4558 -10.1626 5.2042 22 6 6.1475 -9.1138 5.8190 23 7 6.5630 -8.2960 4.8861 24 6 4.1115 -4.7201 1.1798 25 6 3.6552 -3.2610 1.2527 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6805 0.8889 28 1 3.8746 -0.6800 -0.8910 29 1 5.9696 -2.1220 0.5748 30 1 5.6801 -2.1248 -1.1818 31 1 6.9861 -4.1207 -0.4620 32 1 5.4081 -4.5800 -1.1467 33 1 7.1019 -6.1645 0.6528 34 1 5.4720 -6.7404 0.2284 35 1 7.6017 -5.9429 3.0792 36 1 7.4773 -8.1972 2.1388 37 1 5.8882 -8.7577 1.5656 38 1 5.0220 -10.5758 3.1158 39 1 4.9943 -11.0000 5.7064 40 1 6.3105 -8.9989 6.8804 41 1 3.5923 -5.2232 0.3640 42 1 3.8819 -5.2204 2.1206 43 1 4.1539 -2.7653 2.0855 44 1 2.5760 -3.2242 1.4010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349657986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:11 Heat of formation + Delta-G solvation = 54.077427 kcal Electronic energy + Delta-G solvation = -23753.152572 eV Core-core repulsion = 20321.896946 eV Total energy + Delta-G solvation = -3431.255626 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.28398 -39.20696 -37.46937 -34.87455 -33.39830 -32.42957 -30.62912 -30.35420 -29.91338 -28.22679 -26.09139 -24.05403 -23.35530 -21.77383 -21.21956 -20.97282 -20.82229 -19.26800 -17.70163 -16.79591 -16.55278 -16.08628 -15.61826 -15.37187 -14.61864 -14.51497 -14.40519 -14.16900 -14.12704 -13.85019 -13.55791 -13.35192 -12.98895 -12.88608 -12.52080 -12.29597 -12.02979 -11.84922 -11.43437 -11.34997 -10.95056 -10.82065 -10.76121 -10.57362 -10.43156 -10.24417 -10.01724 -9.81935 -9.50145 -9.26268 -8.75400 -8.56407 -8.19708 -7.36449 -6.05010 -4.02341 1.73992 2.28305 2.71805 3.29177 3.36703 3.39609 3.70350 4.16514 4.37645 4.42794 4.51672 4.60301 4.74430 4.79141 4.87358 4.93088 4.99456 5.22319 5.27314 5.37044 5.39372 5.47364 5.57132 5.62625 5.72315 5.73815 5.82734 5.85074 5.99613 6.09193 6.30241 6.48580 6.50627 6.65105 6.79060 6.84183 6.97998 7.11595 7.20443 7.57366 7.59916 7.65940 7.91177 8.05270 8.66136 9.02618 9.56900 11.08095 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.026851 B = 0.002877 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.535574 B = 9730.320363 C =10175.112187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.530 5.530 11 C 0.054 3.946 12 C 0.062 3.938 13 N -0.527 5.527 14 C 0.025 3.975 15 C 0.104 3.896 16 H 0.102 0.898 17 O -0.523 6.523 18 C 0.100 3.900 19 N -0.369 5.369 20 C 0.045 3.955 21 C -0.275 4.275 22 C 0.033 3.967 23 N -0.266 5.266 24 C 0.058 3.942 25 C 0.068 3.932 26 H 0.263 0.737 27 H -0.010 1.010 28 H 0.023 0.977 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.368 0.632 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.170 0.830 39 H 0.145 0.855 40 H 0.181 0.819 41 H 0.038 0.962 42 H 0.072 0.928 43 H 0.031 0.969 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.277 -20.251 4.508 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.547 4.547 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.255 5.255 11 C -0.075 4.075 12 C -0.066 4.066 13 N -0.251 5.251 14 C -0.104 4.104 15 C 0.043 3.957 16 H 0.120 0.880 17 O -0.325 6.325 18 C -0.023 4.023 19 N -0.151 5.151 20 C -0.101 4.101 21 C -0.305 4.305 22 C -0.154 4.154 23 N -0.087 5.087 24 C -0.070 4.070 25 C -0.061 4.061 26 H 0.073 0.927 27 H 0.007 0.993 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.214 0.786 36 H 0.106 0.894 37 H 0.121 0.879 38 H 0.188 0.812 39 H 0.162 0.838 40 H 0.197 0.803 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 15.183 -18.886 4.374 24.623 hybrid contribution 0.346 -0.034 -0.249 0.428 sum 15.529 -18.920 4.125 24.822 Atomic orbital electron populations 1.69893 1.06127 1.26849 1.51120 1.24900 0.94742 0.98882 0.94820 0.86856 0.80364 0.83978 0.78545 1.20179 1.21189 1.19226 1.21023 0.88726 0.94679 1.50318 0.90228 1.20151 0.97046 0.84084 0.95093 1.62124 1.10338 1.19103 1.33920 1.22103 0.90312 0.94663 1.00450 1.22147 0.99368 0.95178 0.89874 1.62058 1.15124 1.13263 1.34704 1.22713 1.00989 0.90686 0.96057 1.22144 0.97452 0.86713 0.89431 0.88041 1.86758 1.22451 1.72330 1.51011 1.22504 1.02856 0.96427 0.80510 1.48606 1.42354 1.17978 1.06188 1.22575 0.98620 0.90543 0.98364 1.21505 1.11803 1.04207 0.92971 1.23965 0.98541 0.93244 0.99641 1.77581 1.21812 1.21106 0.88161 1.22282 0.86199 0.98433 1.00103 1.21999 1.01745 0.91567 0.90740 0.92666 0.99264 0.95853 0.94980 0.90993 0.91182 0.94264 0.90469 0.94023 0.78570 0.89443 0.87949 0.81231 0.83755 0.80254 0.94336 0.90996 0.95073 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.46 6.54 56.52 0.37 -6.10 16 7 C -0.51 -14.60 9.03 -34.44 -0.31 -14.91 16 8 H 0.08 2.47 7.38 -52.49 -0.39 2.08 16 9 C 0.16 4.02 3.79 -4.98 -0.02 4.00 16 10 N -0.53 -11.30 4.70 -235.92 -1.11 -12.41 16 11 C 0.05 0.94 5.61 -3.77 -0.02 0.91 16 12 C 0.06 0.87 5.61 -3.77 -0.02 0.85 16 13 N -0.53 -7.28 4.58 -234.47 -1.07 -8.36 16 14 C 0.03 0.24 4.62 -3.83 -0.02 0.23 16 15 C 0.10 1.03 3.06 -26.73 -0.08 0.94 16 16 H 0.10 1.23 6.49 -51.93 -0.34 0.89 16 17 O -0.52 -6.41 12.24 -35.23 -0.43 -6.84 16 18 C 0.10 0.74 6.18 -4.04 -0.02 0.71 16 19 N -0.37 -3.71 3.68 -61.37 -0.23 -3.93 16 20 C 0.04 0.38 11.45 -17.22 -0.20 0.18 16 21 C -0.28 -2.46 10.80 -40.01 -0.43 -2.89 16 22 C 0.03 0.34 12.03 -17.37 -0.21 0.13 16 23 N -0.27 -3.29 11.56 30.63 0.35 -2.94 16 24 C 0.06 0.91 5.41 -3.77 -0.02 0.89 16 25 C 0.07 1.36 5.43 -3.77 -0.02 1.34 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H -0.01 -0.26 7.18 -51.93 -0.37 -0.64 16 28 H 0.02 0.57 7.45 -51.93 -0.39 0.19 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 31 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.61 8.03 -51.93 -0.42 0.19 16 34 H 0.04 0.38 8.12 -51.93 -0.42 -0.05 16 35 H 0.37 3.38 9.05 45.56 0.41 3.79 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.49 8.07 -51.93 -0.42 0.07 16 38 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.18 1.36 8.06 -52.48 -0.42 0.94 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 1.08 6.34 -51.93 -0.33 0.75 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 2.02 6.79 -51.93 -0.35 1.66 16 LS Contribution 351.64 15.07 5.30 5.30 Total: -1.00 -34.80 351.64 -8.95 -43.75 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.40 Total: 1.06 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -1.47 Total: -5.72 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -1.28 Total: -54.63 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.43 Total: -6.84 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.80 -8.95 -43.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349657986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.829 kcal (2) G-P(sol) polarization free energy of solvation -34.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds