Wall clock time and date at job start Tue Mar 31 2020 03:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47060 * 2 1 4 4 C 1.36932 * 120.00055 * 275.30895 * 3 2 1 5 5 H 1.08001 * 120.00106 * 37.57570 * 4 3 2 6 6 C 1.38815 * 120.00289 * 217.57967 * 4 3 2 7 7 N 1.31621 * 119.99978 * 21.42869 * 6 4 3 8 8 Si 1.86795 * 120.00245 * 201.43243 * 6 4 3 9 9 H 1.48499 * 109.47024 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47346 * 119.99666 * 8 6 4 11 11 H 1.48496 * 109.47348 * 239.99936 * 8 6 4 12 12 C 1.46502 * 120.00187 * 95.31235 * 3 2 1 13 13 C 1.53001 * 109.46891 * 269.99815 * 12 3 2 14 14 N 1.46508 * 109.47229 * 179.97438 * 13 12 3 15 15 C 1.34771 * 119.99991 * 179.97438 * 14 13 12 16 16 O 1.21277 * 120.00008 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99669 * 180.02562 * 15 14 13 18 18 C 1.53001 * 109.46906 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.46906 * 179.97438 * 18 17 15 20 20 N 1.30500 * 125.65001 * 270.26873 * 19 18 17 21 21 C 1.34128 * 109.25283 * 180.14748 * 20 19 18 22 22 C 1.34661 * 108.02272 * 359.62320 * 21 20 19 23 23 N 1.35040 * 125.64814 * 90.00457 * 19 18 17 24 24 C 1.46499 * 126.39895 * 359.97438 * 23 19 18 25 25 H 1.09006 * 109.47209 * 300.00228 * 1 2 3 26 26 H 1.08996 * 109.47076 * 59.99591 * 1 2 3 27 27 H 1.08998 * 109.47462 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46949 * 240.00140 * 2 1 3 29 29 H 1.09004 * 109.47043 * 119.99776 * 2 1 3 30 30 H 0.96995 * 119.99922 * 180.02562 * 7 6 4 31 31 H 1.08991 * 109.47344 * 149.99863 * 12 3 2 32 32 H 1.09007 * 109.47074 * 29.99499 * 12 3 2 33 33 H 1.09001 * 109.47463 * 60.00284 * 13 12 3 34 34 H 1.08998 * 109.47233 * 299.99613 * 13 12 3 35 35 H 0.97002 * 119.99070 * 0.02562 * 14 13 12 36 36 H 1.08998 * 109.47088 * 60.00153 * 17 15 14 37 37 H 1.08998 * 109.47031 * 300.00358 * 17 15 14 38 38 H 1.09008 * 109.47090 * 60.00369 * 18 17 15 39 39 H 1.08998 * 109.47233 * 299.99824 * 18 17 15 40 40 H 1.08009 * 125.98600 * 179.88542 * 21 20 19 41 41 H 1.08006 * 126.59090 * 180.24454 * 22 21 20 42 42 H 1.08997 * 109.47099 * 270.02690 * 24 23 19 43 43 H 1.09000 * 109.47196 * 30.02754 * 24 23 19 44 44 H 1.08998 * 109.47070 * 150.02775 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4106 1.9278 -1.9627 6 6 3.2112 2.9289 -1.3729 7 7 4.3027 2.7980 -0.6491 8 14 3.0993 4.2796 -2.6583 9 1 1.7776 4.2135 -3.3320 10 1 3.2550 5.6023 -2.0015 11 1 4.1766 4.0964 -3.6639 12 6 2.3733 2.0327 1.2633 13 6 1.1426 2.7383 1.8365 14 7 1.4973 3.3893 3.1002 15 6 0.5650 4.0767 3.7890 16 8 -0.5678 4.1560 3.3631 17 6 0.9300 4.7469 5.0885 18 6 -0.3006 5.4523 5.6618 19 6 0.0643 6.1220 6.9617 20 7 -0.0069 5.5759 8.1448 21 6 0.3928 6.4643 9.0667 22 6 0.7322 7.6014 8.4300 23 7 0.5239 7.3848 7.0946 24 6 0.7567 8.3436 6.0117 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.0489 3.4031 -0.7831 31 1 3.1617 2.7641 1.0860 32 1 2.7255 1.2833 1.9722 33 1 0.3541 2.0069 2.0140 34 1 0.7904 3.4877 1.1277 35 1 2.4035 3.3262 3.4405 36 1 1.7187 5.4780 4.9112 37 1 1.2820 3.9975 5.7974 38 1 -1.0891 4.7208 5.8392 39 1 -0.6530 6.2017 4.9531 40 1 0.4388 6.2957 10.1326 41 1 1.0985 8.5096 8.8855 42 1 1.7790 8.2400 5.6482 43 1 0.0597 8.1478 5.1969 44 1 0.6046 9.3566 6.3844 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691033264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:45 Heat of formation + Delta-G solvation = 34.246839 kcal Electronic energy + Delta-G solvation = -23289.142455 eV Core-core repulsion = 19857.026910 eV Total energy + Delta-G solvation = -3432.115545 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.26861 -39.34288 -36.35655 -34.28783 -34.09966 -33.66409 -31.90461 -29.93662 -29.02524 -27.58389 -27.16102 -24.88577 -23.93019 -21.70873 -21.55851 -20.43436 -20.00317 -19.71692 -17.46427 -16.87530 -16.36365 -15.91471 -15.70498 -15.29983 -14.98866 -14.65375 -14.08478 -13.93307 -13.73317 -13.50247 -13.31898 -13.28448 -13.00392 -12.62682 -12.46471 -12.39729 -12.09498 -12.01449 -11.51964 -11.22494 -11.14364 -10.80931 -10.64978 -10.50861 -10.12745 -10.10587 -9.87915 -9.85430 -9.80415 -9.52081 -8.59446 -8.55122 -8.46195 -6.64696 -5.86082 -3.44688 1.82536 2.56063 2.93986 2.96275 3.30649 3.40005 3.44177 3.57295 4.31234 4.42922 4.44655 4.58990 4.76761 4.85535 4.94654 5.09583 5.14573 5.25133 5.27783 5.41632 5.48315 5.55048 5.78574 5.94381 5.99239 6.09486 6.11681 6.16224 6.38238 6.41709 6.50742 6.57441 6.68668 6.87192 6.91014 6.96223 7.01110 7.16156 7.52197 7.78195 7.91774 7.94996 8.45501 8.57259 9.12310 9.74236 10.32482 11.13858 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.018801 B = 0.003075 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.961868 B = 9103.238951 C = 9999.600089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.581 5.581 4 C -0.258 4.258 5 H 0.062 0.938 6 C 0.012 3.988 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.289 1.289 12 C 0.137 3.863 13 C 0.097 3.903 14 N -0.720 5.720 15 C 0.508 3.492 16 O -0.549 6.549 17 C -0.135 4.135 18 C -0.018 4.018 19 C 0.211 3.789 20 N -0.489 5.489 21 C -0.029 4.029 22 C -0.064 4.064 23 N -0.459 5.459 24 C 0.067 3.933 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.046 0.954 29 H 0.034 0.966 30 H 0.254 0.746 31 H 0.098 0.902 32 H 0.029 0.971 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.398 0.602 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.169 0.831 41 H 0.173 0.827 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.623 9.218 15.450 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.301 5.301 4 C -0.388 4.388 5 H 0.080 0.920 6 C -0.188 4.188 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.200 1.200 10 H -0.215 1.215 11 H -0.216 1.216 12 C 0.010 3.990 13 C -0.028 4.028 14 N -0.370 5.370 15 C 0.293 3.707 16 O -0.428 6.428 17 C -0.176 4.176 18 C -0.057 4.057 19 C -0.051 4.051 20 N -0.208 5.208 21 C -0.177 4.177 22 C -0.197 4.197 23 N -0.141 5.141 24 C -0.075 4.075 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.116 0.884 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.231 0.769 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.104 0.896 40 H 0.186 0.814 41 H 0.190 0.810 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.494 8.636 15.132 17.993 hybrid contribution 0.801 1.762 -0.500 1.999 sum -3.693 10.398 14.632 18.326 Atomic orbital electron populations 1.22388 0.99879 0.99108 1.01404 1.20882 0.91789 0.86959 0.98898 1.43630 1.76043 1.08334 1.02114 1.19065 1.04703 1.21101 0.93952 0.92045 1.25190 0.94171 1.01294 0.98155 1.70009 1.03174 1.37261 1.42543 0.86332 0.77794 0.82111 0.81210 1.19960 1.21457 1.21589 1.21055 0.94575 0.96958 0.86416 1.22458 1.01061 0.96558 0.82767 1.46153 1.13162 1.53150 1.24572 1.20448 0.85482 0.79080 0.85644 1.90689 1.20530 1.61440 1.70126 1.21608 0.99099 1.01142 0.95731 1.19719 0.98105 0.99660 0.88256 1.23340 1.02482 0.82714 0.96550 1.70279 1.21042 1.31336 0.98120 1.22312 1.05468 0.90510 0.99444 1.22688 1.11386 1.02636 0.82945 1.45344 1.48750 1.12722 1.07318 1.22109 1.03514 0.92339 0.89556 0.93648 0.93118 0.94431 0.93588 0.94716 0.93610 0.88445 0.95309 0.92966 0.91817 0.76906 0.89364 0.88271 0.87840 0.89618 0.81385 0.80992 0.90206 0.89095 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 10.21 37.16 0.38 -2.74 16 2 C 0.14 2.94 6.44 -4.04 -0.03 2.92 16 3 N -0.58 -14.00 2.43 -173.24 -0.42 -14.42 16 4 C -0.26 -6.88 9.45 -15.06 -0.14 -7.02 16 5 H 0.06 1.66 7.92 -52.49 -0.42 1.24 16 6 C 0.01 0.32 4.95 -17.43 -0.09 0.24 16 7 N -0.89 -24.45 11.47 55.49 0.64 -23.81 16 8 Si 0.90 21.09 29.60 -169.99 -5.03 16.05 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.14 3.01 5.45 -4.04 -0.02 2.99 16 13 C 0.10 1.93 6.00 -4.04 -0.02 1.91 16 14 N -0.72 -11.61 5.56 -60.29 -0.33 -11.94 16 15 C 0.51 7.98 7.83 -10.99 -0.09 7.90 16 16 O -0.55 -10.69 15.98 5.56 0.09 -10.61 16 17 C -0.13 -1.55 5.68 -27.88 -0.16 -1.71 16 18 C -0.02 -0.21 4.81 -27.88 -0.13 -0.34 16 19 C 0.21 2.54 7.16 -155.42 -1.11 1.43 16 20 N -0.49 -6.68 11.25 -10.81 -0.12 -6.81 16 21 C -0.03 -0.32 11.87 -17.82 -0.21 -0.53 16 22 C -0.06 -0.58 11.58 -16.56 -0.19 -0.77 16 23 N -0.46 -4.43 3.15 -121.28 -0.38 -4.81 16 24 C 0.07 0.41 10.97 59.85 0.66 1.07 16 25 H 0.04 0.85 6.64 -51.93 -0.34 0.50 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 29 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 30 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 31 H 0.10 2.39 5.52 -51.93 -0.29 2.11 16 32 H 0.03 0.59 7.86 -51.92 -0.41 0.18 16 33 H 0.05 1.07 6.64 -51.93 -0.34 0.73 16 34 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.40 5.40 8.47 -40.82 -0.35 5.06 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.10 1.34 8.10 -51.92 -0.42 0.92 16 39 H 0.09 0.95 7.03 -51.93 -0.36 0.58 16 40 H 0.17 1.40 8.06 -52.48 -0.42 0.98 16 41 H 0.17 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.54 7.05 -51.93 -0.37 0.17 16 44 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 365.72 15.07 5.51 5.51 Total: -1.00 -33.02 365.72 -8.28 -41.30 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.06 Total: 4.21 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -1.16 Total: 5.33 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.62 Total: -61.80 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.02 -8.28 -41.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691033264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.546 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds