Wall clock time and date at job start Tue Mar 31 2020 03:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47060 * 2 1 4 4 C 1.36932 * 120.00055 * 275.30895 * 3 2 1 5 5 H 1.08001 * 120.00106 * 37.57570 * 4 3 2 6 6 C 1.38815 * 120.00289 * 217.57967 * 4 3 2 7 7 N 1.31621 * 119.99978 * 21.42869 * 6 4 3 8 8 Si 1.86795 * 120.00245 * 201.43243 * 6 4 3 9 9 H 1.48499 * 109.47024 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47346 * 119.99666 * 8 6 4 11 11 H 1.48496 * 109.47348 * 239.99936 * 8 6 4 12 12 C 1.46502 * 120.00187 * 95.31235 * 3 2 1 13 13 C 1.53001 * 109.46891 * 269.99815 * 12 3 2 14 14 N 1.46508 * 109.47229 * 179.97438 * 13 12 3 15 15 C 1.34771 * 119.99991 * 179.97438 * 14 13 12 16 16 O 1.21277 * 120.00008 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99669 * 180.02562 * 15 14 13 18 18 C 1.53001 * 109.46906 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.46906 * 179.97438 * 18 17 15 20 20 N 1.30500 * 125.65001 * 270.26873 * 19 18 17 21 21 C 1.34128 * 109.25283 * 180.14748 * 20 19 18 22 22 C 1.34661 * 108.02272 * 359.62320 * 21 20 19 23 23 N 1.35040 * 125.64814 * 90.00457 * 19 18 17 24 24 C 1.46499 * 126.39895 * 359.97438 * 23 19 18 25 25 H 1.09006 * 109.47209 * 300.00228 * 1 2 3 26 26 H 1.08996 * 109.47076 * 59.99591 * 1 2 3 27 27 H 1.08998 * 109.47462 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46949 * 240.00140 * 2 1 3 29 29 H 1.09004 * 109.47043 * 119.99776 * 2 1 3 30 30 H 0.96995 * 119.99922 * 180.02562 * 7 6 4 31 31 H 1.08991 * 109.47344 * 149.99863 * 12 3 2 32 32 H 1.09007 * 109.47074 * 29.99499 * 12 3 2 33 33 H 1.09001 * 109.47463 * 60.00284 * 13 12 3 34 34 H 1.08998 * 109.47233 * 299.99613 * 13 12 3 35 35 H 0.97002 * 119.99070 * 0.02562 * 14 13 12 36 36 H 1.08998 * 109.47088 * 60.00153 * 17 15 14 37 37 H 1.08998 * 109.47031 * 300.00358 * 17 15 14 38 38 H 1.09008 * 109.47090 * 60.00369 * 18 17 15 39 39 H 1.08998 * 109.47233 * 299.99824 * 18 17 15 40 40 H 1.08009 * 125.98600 * 179.88542 * 21 20 19 41 41 H 1.08006 * 126.59090 * 180.24454 * 22 21 20 42 42 H 1.08997 * 109.47099 * 270.02690 * 24 23 19 43 43 H 1.09000 * 109.47196 * 30.02754 * 24 23 19 44 44 H 1.08998 * 109.47070 * 150.02775 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4106 1.9278 -1.9627 6 6 3.2112 2.9289 -1.3729 7 7 4.3027 2.7980 -0.6491 8 14 3.0993 4.2796 -2.6583 9 1 1.7776 4.2135 -3.3320 10 1 3.2550 5.6023 -2.0015 11 1 4.1766 4.0964 -3.6639 12 6 2.3733 2.0327 1.2633 13 6 1.1426 2.7383 1.8365 14 7 1.4973 3.3893 3.1002 15 6 0.5650 4.0767 3.7890 16 8 -0.5678 4.1560 3.3631 17 6 0.9300 4.7469 5.0885 18 6 -0.3006 5.4523 5.6618 19 6 0.0643 6.1220 6.9617 20 7 -0.0069 5.5759 8.1448 21 6 0.3928 6.4643 9.0667 22 6 0.7322 7.6014 8.4300 23 7 0.5239 7.3848 7.0946 24 6 0.7567 8.3436 6.0117 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.0489 3.4031 -0.7831 31 1 3.1617 2.7641 1.0860 32 1 2.7255 1.2833 1.9722 33 1 0.3541 2.0069 2.0140 34 1 0.7904 3.4877 1.1277 35 1 2.4035 3.3262 3.4405 36 1 1.7187 5.4780 4.9112 37 1 1.2820 3.9975 5.7974 38 1 -1.0891 4.7208 5.8392 39 1 -0.6530 6.2017 4.9531 40 1 0.4388 6.2957 10.1326 41 1 1.0985 8.5096 8.8855 42 1 1.7790 8.2400 5.6482 43 1 0.0597 8.1478 5.1969 44 1 0.6046 9.3566 6.3844 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691033264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:44 Heat of formation + Delta-G solvation = 13.503194 kcal Electronic energy + Delta-G solvation = -23290.041967 eV Core-core repulsion = 19857.026910 eV Total energy + Delta-G solvation = -3433.015057 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.02958 -40.69644 -38.11792 -35.62946 -35.00753 -34.62562 -33.82968 -31.45122 -30.16201 -29.07219 -27.83863 -26.37906 -25.35607 -23.27802 -22.29496 -22.14126 -21.35752 -20.59059 -18.77124 -18.17642 -17.59323 -17.06451 -16.96337 -16.72029 -16.39328 -15.90350 -15.45258 -15.41192 -15.01630 -14.73301 -14.36999 -14.13471 -13.97087 -13.92999 -13.70063 -13.62043 -13.41019 -13.20363 -13.02083 -12.97701 -12.64401 -12.35114 -12.29372 -12.16196 -12.02003 -11.66626 -11.50523 -10.96006 -10.92447 -10.55094 -10.54646 -9.99689 -9.31733 -8.59620 -7.85617 -5.48593 1.07922 1.43086 1.47628 1.57397 1.66123 1.89979 2.10389 2.31926 2.51830 3.21544 3.40923 3.74501 3.82221 3.89986 3.98528 4.15041 4.15739 4.33415 4.38679 4.45823 4.47731 4.52681 4.61407 4.68080 4.68801 4.77747 4.82944 4.84835 4.93744 5.02297 5.08807 5.24093 5.28828 5.36982 5.45769 5.56418 5.67040 5.75680 5.86156 6.23927 6.45315 6.62768 7.14852 7.16504 7.29371 7.82812 8.35449 9.10402 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.018801 B = 0.003075 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.961868 B = 9103.238951 C = 9999.600089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.599 5.599 4 C -0.269 4.269 5 H 0.051 0.949 6 C -0.029 4.029 7 N -0.911 5.911 8 Si 0.952 3.048 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.288 1.288 12 C 0.145 3.855 13 C 0.119 3.881 14 N -0.714 5.714 15 C 0.509 3.491 16 O -0.589 6.589 17 C -0.117 4.117 18 C -0.011 4.011 19 C 0.192 3.808 20 N -0.528 5.528 21 C -0.059 4.059 22 C -0.047 4.047 23 N -0.457 5.457 24 C 0.059 3.941 25 H 0.040 0.960 26 H 0.034 0.966 27 H 0.068 0.932 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.254 0.746 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.046 0.954 34 H 0.031 0.969 35 H 0.412 0.588 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.184 0.816 41 H 0.210 0.790 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 10.518 16.504 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.320 5.320 4 C -0.400 4.400 5 H 0.069 0.931 6 C -0.227 4.227 7 N -0.554 5.554 8 Si 0.780 3.220 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.215 1.215 12 C 0.018 3.982 13 C -0.008 4.008 14 N -0.366 5.366 15 C 0.297 3.703 16 O -0.469 6.469 17 C -0.158 4.158 18 C -0.050 4.050 19 C -0.071 4.071 20 N -0.248 5.248 21 C -0.207 4.207 22 C -0.181 4.181 23 N -0.139 5.139 24 C -0.082 4.082 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.248 0.752 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.201 0.799 41 H 0.227 0.773 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.046 9.936 16.197 19.427 hybrid contribution 0.652 1.347 -0.775 1.685 sum -3.394 11.283 15.422 19.407 Atomic orbital electron populations 1.22215 0.97982 1.00841 1.00383 1.21011 0.93181 0.85511 0.99224 1.43877 1.76403 1.09642 1.02099 1.19183 1.04372 1.21712 0.94709 0.93133 1.25772 0.93971 1.02903 1.00074 1.70096 1.03558 1.37906 1.43851 0.85469 0.77559 0.79753 0.79212 1.19869 1.21292 1.21458 1.20927 0.94470 0.96733 0.86094 1.21905 0.99768 0.95399 0.83686 1.46006 1.14208 1.53021 1.23369 1.21137 0.84557 0.78188 0.86441 1.90675 1.22240 1.62699 1.71327 1.21520 0.99706 1.01532 0.93060 1.19566 0.97517 0.99323 0.88629 1.23159 1.03996 0.83937 0.95984 1.70194 1.22166 1.33157 0.99304 1.22748 1.06614 0.91106 1.00209 1.23276 1.09172 1.03134 0.82506 1.45558 1.47645 1.12342 1.08359 1.22393 1.04184 0.92769 0.88835 0.94053 0.94664 0.91280 0.94499 0.93082 0.93687 0.90773 0.93885 0.93544 0.95055 0.75189 0.86835 0.87223 0.89826 0.89243 0.79867 0.77315 0.89069 0.89138 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.59 10.21 71.98 0.73 -4.86 16 2 C 0.14 5.60 6.44 86.38 0.56 6.15 16 3 N -0.60 -28.99 2.43 -702.00 -1.71 -30.70 16 4 C -0.27 -14.49 9.45 84.03 0.79 -13.70 16 5 H 0.05 2.78 7.92 -2.91 -0.02 2.75 16 6 C -0.03 -1.57 4.95 84.86 0.42 -1.15 16 7 N -0.91 -50.36 11.47 21.65 0.25 -50.11 16 8 Si 0.95 43.55 29.60 68.60 2.03 45.58 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 12 C 0.14 6.35 5.45 86.38 0.47 6.82 16 13 C 0.12 4.77 6.00 86.38 0.52 5.29 16 14 N -0.71 -22.57 5.56 -463.05 -2.57 -25.14 16 15 C 0.51 15.68 7.83 87.66 0.69 16.37 16 16 O -0.59 -23.07 15.98 -3.02 -0.05 -23.12 16 17 C -0.12 -2.54 5.68 29.85 0.17 -2.37 16 18 C -0.01 -0.25 4.81 29.85 0.14 -0.10 16 19 C 0.19 4.40 7.16 138.13 0.99 5.39 16 20 N -0.53 -14.15 11.25 -188.13 -2.12 -16.27 16 21 C -0.06 -1.22 11.87 83.52 0.99 -0.22 16 22 C -0.05 -0.73 11.58 83.08 0.96 0.23 16 23 N -0.46 -7.77 3.15 -537.62 -1.69 -9.47 16 24 C 0.06 0.56 10.97 127.77 1.40 1.96 16 25 H 0.04 1.51 6.64 -2.38 -0.02 1.49 16 26 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 29 H 0.05 1.91 7.83 -2.38 -0.02 1.89 16 30 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 31 H 0.07 3.66 5.52 -2.39 -0.01 3.65 16 32 H 0.04 1.73 7.86 -2.38 -0.02 1.72 16 33 H 0.05 1.92 6.64 -2.39 -0.02 1.90 16 34 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.41 10.66 8.47 -92.71 -0.79 9.88 16 36 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.08 2.23 8.10 -2.38 -0.02 2.21 16 39 H 0.09 1.93 7.03 -2.39 -0.02 1.91 16 40 H 0.18 2.84 8.06 -2.91 -0.02 2.82 16 41 H 0.21 1.47 8.06 -2.91 -0.02 1.44 16 42 H 0.09 0.68 8.14 -2.39 -0.02 0.67 16 43 H 0.09 0.88 7.05 -2.39 -0.02 0.86 16 44 H 0.11 0.50 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -72.00 365.72 3.18 -68.82 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.20 Total: 20.59 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 8.84 Total: 19.82 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -7.84 Total: -131.69 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.05 Total: -23.12 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -72.00 3.18 -68.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691033264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.327 kcal (2) G-P(sol) polarization free energy of solvation -72.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds