Wall clock time and date at job start Tue Mar 31 2020 03:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47487 * 2 1 4 4 C 1.46499 * 119.99794 * 270.00317 * 3 2 1 5 5 C 1.52994 * 109.46918 * 269.99733 * 4 3 2 6 6 N 1.46502 * 109.47324 * 180.02562 * 5 4 3 7 7 C 1.36938 * 120.00336 * 179.97438 * 6 5 4 8 8 H 1.07992 * 119.99954 * 0.02562 * 7 6 5 9 9 C 1.38809 * 119.99717 * 179.97438 * 7 6 5 10 10 N 1.31621 * 120.00532 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99648 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47145 * 90.00393 * 11 9 7 13 13 H 1.48499 * 109.47076 * 209.99999 * 11 9 7 14 14 H 1.48495 * 109.47396 * 330.00213 * 11 9 7 15 15 C 1.34772 * 119.99793 * 89.99873 * 3 2 1 16 16 O 1.21282 * 119.99846 * 180.02562 * 15 3 2 17 17 C 1.50696 * 120.00298 * 0.02562 * 15 3 2 18 18 C 1.53005 * 109.47260 * 179.97438 * 17 15 3 19 19 C 1.50696 * 109.47260 * 179.97438 * 18 17 15 20 20 C 1.35325 * 126.12378 * 85.02905 * 19 18 17 21 21 C 1.39868 * 107.91737 * 180.24396 * 20 19 18 22 22 N 1.30842 * 108.20327 * 359.55203 * 21 20 19 23 23 N 1.34941 * 126.13067 * 265.00771 * 19 18 17 24 24 C 1.46498 * 126.04014 * 359.97438 * 23 19 18 25 25 H 1.09006 * 109.46738 * 299.99876 * 1 2 3 26 26 H 1.08990 * 109.46848 * 59.99851 * 1 2 3 27 27 H 1.08995 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46862 * 239.99619 * 2 1 3 29 29 H 1.09002 * 109.47208 * 120.00400 * 2 1 3 30 30 H 1.08999 * 109.47050 * 29.99721 * 4 3 2 31 31 H 1.09005 * 109.46988 * 149.99479 * 4 3 2 32 32 H 1.08999 * 109.47250 * 299.99866 * 5 4 3 33 33 H 1.09000 * 109.47612 * 60.00531 * 5 4 3 34 34 H 0.97012 * 119.99620 * 359.97438 * 6 5 4 35 35 H 0.97001 * 120.00005 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.46733 * 60.00075 * 17 15 3 37 37 H 1.08995 * 109.47496 * 300.00545 * 17 15 3 38 38 H 1.09002 * 109.46948 * 60.00498 * 18 17 15 39 39 H 1.08998 * 109.46871 * 300.00528 * 18 17 15 40 40 H 1.08002 * 126.03725 * 359.97438 * 20 19 18 41 41 H 1.08007 * 125.89524 * 179.73435 * 21 20 19 42 42 H 1.08994 * 109.47427 * 90.00207 * 24 23 19 43 43 H 1.08999 * 109.47247 * 210.00793 * 24 23 19 44 44 H 1.09007 * 109.46720 * 330.00755 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7104 6 7 3.9519 2.5223 -2.9789 7 6 5.1843 2.4503 -3.5715 8 1 5.9759 1.8837 -3.1041 9 6 5.4156 3.1046 -4.7737 10 7 4.4506 3.7948 -5.3437 11 14 7.0969 3.0069 -5.5818 12 1 7.1395 1.8374 -6.4960 13 1 7.3472 4.2494 -6.3555 14 1 8.1406 2.8561 -4.5363 15 6 2.2431 2.0165 1.1672 16 8 2.6470 3.1601 1.1672 17 6 1.9924 1.3059 2.4723 18 6 2.3243 2.2431 3.6352 19 6 2.0731 1.5328 4.9403 20 6 2.9392 0.7160 5.5837 21 6 2.3161 0.2615 6.7505 22 7 1.1225 0.7941 6.8106 23 7 0.9443 1.5975 5.6769 24 6 -0.2553 2.3721 5.3496 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5817 1.6876 -2.0283 31 1 2.0956 3.1410 -1.1384 32 1 4.3883 2.2154 -0.9508 33 1 3.8745 0.7621 -1.8408 34 1 3.2406 3.0310 -3.3990 35 1 4.6124 4.2524 -6.1835 36 1 2.6229 0.4187 2.5298 37 1 0.9446 1.0113 2.5302 38 1 1.6941 3.1306 3.5779 39 1 3.3723 2.5373 3.5770 40 1 3.9340 0.4572 5.2523 41 1 2.7471 -0.4105 7.4780 42 1 -0.9333 1.7586 4.7563 43 1 -0.7530 2.6775 6.2700 44 1 0.0279 3.2566 4.7788 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754047181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:43 Heat of formation + Delta-G solvation = 48.986411 kcal Electronic energy + Delta-G solvation = -23311.981731 eV Core-core repulsion = 19880.505342 eV Total energy + Delta-G solvation = -3431.476389 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.48478 -39.93636 -36.32433 -34.71155 -34.24440 -33.21715 -31.77415 -30.33423 -29.70431 -27.62137 -26.98366 -24.99434 -23.69788 -23.06244 -21.44638 -21.35459 -19.88694 -18.90004 -17.50996 -17.12389 -16.46566 -16.19513 -15.84534 -15.43693 -14.81991 -14.55243 -14.19239 -13.98687 -13.82544 -13.78075 -13.52844 -13.12632 -13.08543 -12.97055 -12.70187 -12.54722 -12.47466 -12.39180 -11.84306 -11.54582 -11.28402 -11.15025 -10.98172 -10.87909 -10.82667 -10.66948 -10.10809 -9.82731 -9.69063 -9.47242 -8.86695 -8.73794 -8.55360 -6.92686 -5.75634 -3.04832 1.60584 2.26802 2.60435 2.68667 3.04551 3.44753 3.49898 3.52058 4.17913 4.30348 4.61675 4.63451 4.67904 4.72692 4.81356 4.88233 4.91066 5.03511 5.10008 5.17350 5.28176 5.32047 5.50433 5.53616 5.56233 5.59853 5.62134 5.65830 5.78458 5.81746 5.99115 6.01048 6.04719 6.14259 6.42969 6.55463 6.74217 6.75727 6.91115 7.47776 7.48401 7.70961 8.25155 8.42979 9.53828 10.10042 10.44967 11.47324 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.025043 B = 0.002700 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.826852 B =10368.774684 C =10809.938099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.606 5.606 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.731 5.731 7 C -0.237 4.237 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.909 3.091 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.511 3.489 16 O -0.533 6.533 17 C -0.132 4.132 18 C -0.044 4.044 19 C 0.090 3.910 20 C -0.272 4.272 21 C 0.046 3.954 22 N -0.303 5.303 23 N -0.372 5.372 24 C 0.097 3.903 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.023 0.977 33 H 0.017 0.983 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.148 0.852 41 H 0.182 0.818 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.050 -8.905 21.145 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.340 5.340 4 C -0.015 4.015 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.299 3.701 16 O -0.410 6.410 17 C -0.172 4.172 18 C -0.083 4.083 19 C -0.037 4.037 20 C -0.302 4.302 21 C -0.139 4.139 22 N -0.124 5.124 23 N -0.155 5.155 24 C -0.044 4.044 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.041 0.959 33 H 0.035 0.965 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.166 0.834 41 H 0.199 0.801 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.885 -8.150 21.755 26.095 hybrid contribution 1.367 -0.091 -1.151 1.789 sum -10.518 -8.241 20.604 24.557 Atomic orbital electron populations 1.22213 0.95979 1.02216 1.02509 1.21605 0.94278 0.82654 1.03634 1.47953 1.65475 1.14221 1.06321 1.21697 0.98130 0.98375 0.83278 1.20900 0.92761 0.95459 0.89397 1.42217 1.12882 1.60766 1.21669 1.19204 0.89291 1.26042 1.02333 0.91200 1.24750 0.97869 1.00341 0.98063 1.69661 1.31622 1.37403 1.19574 0.86161 0.83665 0.76968 0.79241 1.21711 1.21716 1.20727 1.20500 0.77606 0.86776 0.85259 1.90748 1.45106 1.17859 1.87273 1.21653 1.03839 0.99925 0.91803 1.20017 1.04955 0.96790 0.86582 1.21123 0.87660 0.99479 0.95484 1.21300 1.02614 1.07377 0.98867 1.23835 0.92057 0.99780 0.98277 1.77360 1.19622 1.10408 1.05012 1.48514 1.12650 1.37407 1.16930 1.21879 0.84739 0.95148 1.02680 0.92772 0.91927 0.91493 0.89687 0.90443 0.90588 0.89741 0.95936 0.96496 0.78286 0.93488 0.88260 0.89170 0.89880 0.88080 0.83415 0.80068 0.90689 0.89279 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.24 37.16 0.38 -0.97 16 2 C 0.10 0.96 5.93 -4.04 -0.02 0.93 16 3 N -0.61 -8.02 2.47 -173.69 -0.43 -8.45 16 4 C 0.11 1.81 5.52 -4.05 -0.02 1.78 16 5 C 0.14 3.01 6.58 -4.04 -0.03 2.98 16 6 N -0.73 -19.07 5.60 -59.91 -0.34 -19.41 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 11 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 C 0.51 6.95 7.67 -10.99 -0.08 6.87 16 16 O -0.53 -9.56 15.56 5.56 0.09 -9.47 16 17 C -0.13 -1.22 4.23 -27.88 -0.12 -1.33 16 18 C -0.04 -0.42 4.79 -27.88 -0.13 -0.55 16 19 C 0.09 0.89 6.19 -82.27 -0.51 0.38 16 20 C -0.27 -2.61 10.72 -40.01 -0.43 -3.04 16 21 C 0.05 0.44 12.03 -17.36 -0.21 0.23 16 22 N -0.30 -3.46 12.58 30.63 0.39 -3.08 16 23 N -0.37 -3.73 4.01 -63.89 -0.26 -3.99 16 24 C 0.10 0.64 11.27 59.85 0.67 1.31 16 25 H 0.05 0.41 7.22 -51.93 -0.38 0.03 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.08 0.58 6.44 -51.93 -0.33 0.24 16 30 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.08 1.58 7.42 -51.93 -0.39 1.20 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.38 10.39 7.67 -40.81 -0.31 10.08 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.10 0.80 7.40 -51.93 -0.38 0.42 16 37 H 0.09 0.69 7.19 -51.93 -0.37 0.32 16 38 H 0.08 0.79 6.90 -51.93 -0.36 0.44 16 39 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 40 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.18 1.16 8.06 -52.48 -0.42 0.73 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.48 6.97 -51.92 -0.36 0.12 16 LS Contribution 367.38 15.07 5.54 5.54 Total: -1.00 -35.86 367.38 -7.13 -42.99 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.07 Total: 4.97 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -0.75 Total: 1.09 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: 0.09 Total: -62.82 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.86 -7.13 -42.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754047181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.974 kcal (2) G-P(sol) polarization free energy of solvation -35.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds