Wall clock time and date at job start Tue Mar 31 2020 03:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47487 * 2 1 4 4 C 1.46499 * 119.99794 * 270.00317 * 3 2 1 5 5 C 1.52994 * 109.46918 * 269.99733 * 4 3 2 6 6 N 1.46502 * 109.47324 * 180.02562 * 5 4 3 7 7 C 1.36938 * 120.00336 * 179.97438 * 6 5 4 8 8 H 1.07992 * 119.99954 * 0.02562 * 7 6 5 9 9 C 1.38809 * 119.99717 * 179.97438 * 7 6 5 10 10 N 1.31621 * 120.00532 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99648 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47145 * 90.00393 * 11 9 7 13 13 H 1.48499 * 109.47076 * 209.99999 * 11 9 7 14 14 H 1.48495 * 109.47396 * 330.00213 * 11 9 7 15 15 C 1.34772 * 119.99793 * 89.99873 * 3 2 1 16 16 O 1.21282 * 119.99846 * 180.02562 * 15 3 2 17 17 C 1.50696 * 120.00298 * 0.02562 * 15 3 2 18 18 C 1.53005 * 109.47260 * 179.97438 * 17 15 3 19 19 C 1.50696 * 109.47260 * 179.97438 * 18 17 15 20 20 C 1.35325 * 126.12378 * 85.02905 * 19 18 17 21 21 C 1.39868 * 107.91737 * 180.24396 * 20 19 18 22 22 N 1.30842 * 108.20327 * 359.55203 * 21 20 19 23 23 N 1.34941 * 126.13067 * 265.00771 * 19 18 17 24 24 C 1.46498 * 126.04014 * 359.97438 * 23 19 18 25 25 H 1.09006 * 109.46738 * 299.99876 * 1 2 3 26 26 H 1.08990 * 109.46848 * 59.99851 * 1 2 3 27 27 H 1.08995 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46862 * 239.99619 * 2 1 3 29 29 H 1.09002 * 109.47208 * 120.00400 * 2 1 3 30 30 H 1.08999 * 109.47050 * 29.99721 * 4 3 2 31 31 H 1.09005 * 109.46988 * 149.99479 * 4 3 2 32 32 H 1.08999 * 109.47250 * 299.99866 * 5 4 3 33 33 H 1.09000 * 109.47612 * 60.00531 * 5 4 3 34 34 H 0.97012 * 119.99620 * 359.97438 * 6 5 4 35 35 H 0.97001 * 120.00005 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.46733 * 60.00075 * 17 15 3 37 37 H 1.08995 * 109.47496 * 300.00545 * 17 15 3 38 38 H 1.09002 * 109.46948 * 60.00498 * 18 17 15 39 39 H 1.08998 * 109.46871 * 300.00528 * 18 17 15 40 40 H 1.08002 * 126.03725 * 359.97438 * 20 19 18 41 41 H 1.08007 * 125.89524 * 179.73435 * 21 20 19 42 42 H 1.08994 * 109.47427 * 90.00207 * 24 23 19 43 43 H 1.08999 * 109.47247 * 210.00793 * 24 23 19 44 44 H 1.09007 * 109.46720 * 330.00755 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7104 6 7 3.9519 2.5223 -2.9789 7 6 5.1843 2.4503 -3.5715 8 1 5.9759 1.8837 -3.1041 9 6 5.4156 3.1046 -4.7737 10 7 4.4506 3.7948 -5.3437 11 14 7.0969 3.0069 -5.5818 12 1 7.1395 1.8374 -6.4960 13 1 7.3472 4.2494 -6.3555 14 1 8.1406 2.8561 -4.5363 15 6 2.2431 2.0165 1.1672 16 8 2.6470 3.1601 1.1672 17 6 1.9924 1.3059 2.4723 18 6 2.3243 2.2431 3.6352 19 6 2.0731 1.5328 4.9403 20 6 2.9392 0.7160 5.5837 21 6 2.3161 0.2615 6.7505 22 7 1.1225 0.7941 6.8106 23 7 0.9443 1.5975 5.6769 24 6 -0.2553 2.3721 5.3496 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5817 1.6876 -2.0283 31 1 2.0956 3.1410 -1.1384 32 1 4.3883 2.2154 -0.9508 33 1 3.8745 0.7621 -1.8408 34 1 3.2406 3.0310 -3.3990 35 1 4.6124 4.2524 -6.1835 36 1 2.6229 0.4187 2.5298 37 1 0.9446 1.0113 2.5302 38 1 1.6941 3.1306 3.5779 39 1 3.3723 2.5373 3.5770 40 1 3.9340 0.4572 5.2523 41 1 2.7471 -0.4105 7.4780 42 1 -0.9333 1.7586 4.7563 43 1 -0.7530 2.6775 6.2700 44 1 0.0279 3.2566 4.7788 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754047181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:42 Heat of formation + Delta-G solvation = 25.060787 kcal Electronic energy + Delta-G solvation = -23313.019224 eV Core-core repulsion = 19880.505342 eV Total energy + Delta-G solvation = -3432.513882 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.19682 -41.02879 -37.59885 -36.36838 -35.16381 -33.93581 -33.50015 -31.56249 -30.59729 -29.05957 -27.57295 -26.29076 -25.05824 -24.16657 -23.02905 -22.05388 -20.60221 -20.01740 -19.16745 -18.32987 -17.41065 -17.26947 -16.79720 -16.51885 -16.23899 -15.56603 -15.43039 -15.18602 -15.06761 -14.81833 -14.72883 -14.45026 -14.25241 -13.70258 -13.51214 -13.35330 -13.19481 -13.13695 -13.03128 -12.89755 -12.76411 -12.59053 -12.31874 -12.20120 -12.13613 -11.89099 -11.85417 -11.55501 -10.98570 -10.87045 -10.21332 -9.71806 -9.45079 -9.07074 -7.98498 -5.29205 0.88397 1.46061 1.48738 1.57189 1.62148 1.64931 1.87221 2.02498 2.55559 3.34212 3.36095 3.73044 3.83589 3.93445 3.96008 4.04369 4.15171 4.21917 4.23381 4.35621 4.38905 4.43321 4.51573 4.57037 4.58998 4.64995 4.66632 4.84809 4.89884 4.90329 4.99095 5.03913 5.08299 5.11422 5.29370 5.38572 5.43309 5.57620 5.77229 6.10021 6.23163 6.43978 6.77289 7.18340 7.29260 8.01302 8.26235 9.24926 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.025043 B = 0.002700 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.826852 B =10368.774684 C =10809.938099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 N -0.605 5.605 4 C 0.123 3.877 5 C 0.149 3.851 6 N -0.744 5.744 7 C -0.250 4.250 8 H 0.073 0.927 9 C -0.074 4.074 10 N -0.968 5.968 11 Si 0.978 3.022 12 H -0.281 1.281 13 H -0.293 1.293 14 H -0.271 1.271 15 C 0.507 3.493 16 O -0.584 6.584 17 C -0.117 4.117 18 C -0.037 4.037 19 C 0.086 3.914 20 C -0.282 4.282 21 C 0.042 3.958 22 N -0.335 5.335 23 N -0.378 5.378 24 C 0.088 3.912 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.001 0.999 33 H 0.029 0.971 34 H 0.375 0.625 35 H 0.253 0.747 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.161 0.839 41 H 0.208 0.792 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.193 -10.828 22.054 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.026 4.026 3 N -0.337 5.337 4 C -0.001 4.001 5 C 0.022 3.978 6 N -0.387 5.387 7 C -0.382 4.382 8 H 0.091 0.909 9 C -0.266 4.266 10 N -0.619 5.619 11 Si 0.806 3.194 12 H -0.208 1.208 13 H -0.220 1.220 14 H -0.196 1.196 15 C 0.297 3.703 16 O -0.464 6.464 17 C -0.157 4.157 18 C -0.076 4.076 19 C -0.042 4.042 20 C -0.311 4.311 21 C -0.142 4.142 22 N -0.157 5.157 23 N -0.161 5.161 24 C -0.052 4.052 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.019 0.981 33 H 0.047 0.953 34 H 0.207 0.793 35 H 0.062 0.938 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.178 0.822 41 H 0.224 0.776 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.052 -10.131 22.704 27.629 hybrid contribution 1.389 0.486 -1.375 2.014 sum -10.663 -9.644 21.329 25.722 Atomic orbital electron populations 1.22173 0.94517 1.03555 1.02161 1.21920 0.95452 0.80302 1.04954 1.48048 1.65151 1.15620 1.04873 1.21279 0.95676 0.97615 0.85513 1.20954 0.95001 0.95114 0.86759 1.42413 1.12023 1.61141 1.23131 1.19587 0.90327 1.25651 1.02589 0.90867 1.25628 1.01746 1.00395 0.98860 1.69817 1.33678 1.38472 1.19903 0.85085 0.79275 0.76816 0.78238 1.20799 1.21980 1.19629 1.21293 0.76262 0.86283 0.86510 1.90729 1.47398 1.20293 1.88024 1.21616 1.05706 0.99682 0.88658 1.19894 1.04151 0.96826 0.86775 1.21145 0.87974 0.99594 0.95505 1.21579 1.03216 1.07349 0.98949 1.24318 0.91561 0.99648 0.98712 1.77318 1.20755 1.11535 1.06048 1.48777 1.13394 1.37375 1.16552 1.22133 0.84176 0.95538 1.03391 0.92062 0.93388 0.89264 0.89894 0.87650 0.89184 0.92219 0.98084 0.95292 0.79296 0.93787 0.86270 0.86704 0.90187 0.89322 0.82162 0.77585 0.89179 0.88766 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 71.98 0.74 -1.40 16 2 C 0.10 1.53 5.93 86.38 0.51 2.05 16 3 N -0.60 -15.27 2.47 -821.82 -2.03 -17.30 16 4 C 0.12 4.15 5.52 86.38 0.48 4.62 16 5 C 0.15 6.31 6.58 86.38 0.57 6.88 16 6 N -0.74 -39.47 5.60 -343.47 -1.92 -41.40 16 7 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 8 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 9 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 10 N -0.97 -60.15 13.06 21.65 0.28 -59.86 16 11 Si 0.98 46.77 29.55 68.60 2.03 48.79 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 14 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 15 C 0.51 13.32 7.67 87.66 0.67 13.99 16 16 O -0.58 -21.33 15.56 -3.04 -0.05 -21.38 16 17 C -0.12 -1.88 4.23 29.85 0.13 -1.75 16 18 C -0.04 -0.66 4.79 29.85 0.14 -0.52 16 19 C 0.09 1.55 6.19 41.41 0.26 1.81 16 20 C -0.28 -4.90 10.72 21.99 0.24 -4.66 16 21 C 0.04 0.74 12.03 85.23 1.02 1.76 16 22 N -0.33 -7.19 12.58 -57.02 -0.72 -7.91 16 23 N -0.38 -7.00 4.01 -356.04 -1.43 -8.43 16 24 C 0.09 1.02 11.27 127.77 1.44 2.46 16 25 H 0.06 0.71 7.22 -2.38 -0.02 0.69 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.08 1.41 8.07 -2.39 -0.02 1.39 16 29 H 0.11 1.14 6.44 -2.39 -0.02 1.13 16 30 H 0.09 2.77 8.07 -2.39 -0.02 2.75 16 31 H 0.06 2.32 7.42 -2.38 -0.02 2.30 16 32 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.38 20.87 7.67 -92.70 -0.71 20.16 16 35 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 36 H 0.12 1.51 7.40 -2.39 -0.02 1.49 16 37 H 0.11 1.34 7.19 -2.39 -0.02 1.32 16 38 H 0.08 1.47 6.90 -2.39 -0.02 1.46 16 39 H 0.09 1.82 8.10 -2.39 -0.02 1.80 16 40 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 41 H 0.21 2.20 8.06 -2.91 -0.02 2.18 16 42 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.10 0.93 6.97 -2.38 -0.02 0.91 16 Total: -1.00 -78.35 367.38 3.94 -74.41 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.28 Total: 25.30 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 7.50 Total: 7.77 kcal Atomic # 7 Polarization: -129.08 SS G_CDS: -5.82 Total: -134.90 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.05 Total: -21.38 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -78.35 3.94 -74.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754047181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.471 kcal (2) G-P(sol) polarization free energy of solvation -78.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds