Wall clock time and date at job start Tue Mar 31 2020 03:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47033 * 2 1 4 4 C 1.52993 * 109.46961 * 240.00001 * 2 1 3 5 5 N 1.46496 * 109.47524 * 184.99885 * 4 2 1 6 6 C 1.36935 * 120.00776 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99457 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00581 * 180.02562 * 6 5 4 9 9 N 1.31615 * 119.99646 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00113 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47138 * 60.00301 * 10 8 6 12 12 H 1.48503 * 109.47109 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47407 * 300.00182 * 10 8 6 14 14 N 1.46501 * 109.47298 * 120.00218 * 2 1 3 15 15 C 1.34781 * 119.99528 * 274.99918 * 14 2 1 16 16 O 1.21560 * 120.00359 * 0.02562 * 15 14 2 17 17 C 1.47715 * 119.99657 * 179.97438 * 15 14 2 18 18 C 1.41502 * 126.51978 * 179.97438 * 17 15 14 19 19 C 1.35358 * 105.50345 * 180.02562 * 18 17 15 20 20 N 1.35034 * 107.22943 * 359.97438 * 19 18 17 21 21 C 1.46504 * 124.88531 * 179.74087 * 20 19 18 22 22 C 1.53002 * 109.47281 * 74.99322 * 21 20 19 23 23 C 1.52994 * 109.47106 * 194.99916 * 21 20 19 24 24 C 1.53005 * 109.46838 * 314.99915 * 21 20 19 25 25 N 1.28465 * 110.23160 * 359.97438 * 20 19 18 26 26 H 1.09003 * 109.47007 * 300.00096 * 1 2 3 27 27 H 1.09000 * 109.47301 * 59.99484 * 1 2 3 28 28 H 1.08999 * 109.47453 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47760 * 305.00291 * 4 2 1 30 30 H 1.09004 * 109.47172 * 64.99818 * 4 2 1 31 31 H 0.97008 * 119.99434 * 0.02562 * 5 4 2 32 32 H 0.97004 * 120.00065 * 179.97438 * 9 8 6 33 33 H 0.96991 * 119.99954 * 94.99400 * 14 2 1 34 34 H 1.08002 * 127.24385 * 359.97438 * 18 17 15 35 35 H 1.08002 * 126.38813 * 180.02562 * 19 18 17 36 36 H 1.09000 * 109.46748 * 60.00361 * 22 21 20 37 37 H 1.09001 * 109.47236 * 180.02562 * 22 21 20 38 38 H 1.08990 * 109.47102 * 300.00539 * 22 21 20 39 39 H 1.08992 * 109.47267 * 60.00023 * 23 21 20 40 40 H 1.09001 * 109.47059 * 179.97438 * 23 21 20 41 41 H 1.08993 * 109.47118 * 299.99341 * 23 21 20 42 42 H 1.09000 * 109.47345 * 59.99415 * 24 21 20 43 43 H 1.09001 * 109.46930 * 179.97438 * 24 21 20 44 44 H 1.09005 * 109.46972 * 299.99902 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 7 3.4999 -0.8264 -1.1907 6 6 4.1837 -1.4388 -2.2068 7 1 3.6466 -1.8440 -3.0516 8 6 5.5671 -1.5389 -2.1510 9 7 6.2216 -1.0456 -1.1212 10 14 6.4998 -2.3738 -3.5375 11 1 6.2433 -1.6535 -4.8106 12 1 7.9546 -2.3498 -3.2403 13 1 6.0431 -3.7811 -3.6643 14 7 2.0184 -0.6906 1.1961 15 6 2.1471 -0.0182 2.3571 16 8 1.8575 1.1611 2.4118 17 6 2.6390 -0.7147 3.5633 18 6 2.8267 -0.1470 4.8458 19 6 3.2875 -1.1545 5.6235 20 7 3.3675 -2.2555 4.8459 21 6 3.8285 -3.5701 5.2996 22 6 2.7375 -4.2290 6.1460 23 6 4.1339 -4.4502 4.0860 24 6 5.0957 -3.4036 6.1407 25 7 2.9857 -1.9834 3.6499 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6053 -1.7198 -1.2952 30 1 1.7515 -0.1583 -2.1370 31 1 3.9823 -0.4628 -0.4316 32 1 7.1883 -1.1159 -1.0820 33 1 2.2490 -1.6317 1.1526 34 1 2.6419 0.8752 5.1416 35 1 3.5429 -1.0900 6.6709 36 1 1.8348 -4.3476 5.5468 37 1 3.0808 -5.2069 6.4840 38 1 2.5200 -3.6020 7.0106 39 1 4.9111 -3.9808 3.4831 40 1 4.4774 -5.4281 4.4235 41 1 3.2312 -4.5688 3.4868 42 1 4.8782 -2.7765 7.0053 43 1 5.4385 -4.3816 6.4787 44 1 5.8730 -2.9341 5.5377 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754228094.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:39 Heat of formation + Delta-G solvation = 22.125668 kcal Electronic energy + Delta-G solvation = -24135.180424 eV Core-core repulsion = 20702.539266 eV Total energy + Delta-G solvation = -3432.641158 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.69260 -40.63243 -37.90093 -37.53757 -35.46613 -33.21970 -32.05563 -31.87219 -30.91499 -28.36663 -28.27744 -27.44197 -25.50944 -24.43596 -22.96243 -21.90212 -21.35505 -20.42371 -19.29224 -18.64162 -17.47721 -17.18847 -17.01226 -16.64581 -15.83594 -15.52136 -15.28060 -15.23506 -15.11085 -14.68890 -14.61808 -14.24270 -13.84088 -13.65596 -13.53707 -13.28058 -13.19095 -13.11289 -13.06596 -12.75323 -12.74885 -12.66147 -12.23186 -12.20270 -12.15325 -11.91004 -11.73683 -11.68708 -11.21288 -10.95154 -10.27186 -10.09101 -9.90379 -9.02853 -7.94258 -5.24983 0.60144 1.23823 1.46060 1.49951 1.50693 1.55928 2.22887 2.44777 2.55673 3.28144 3.39374 3.67915 3.72864 3.82888 3.84375 3.93670 4.02529 4.25626 4.29056 4.49713 4.59168 4.60902 4.68180 4.70499 4.76865 4.78402 4.81178 4.82142 4.84462 4.84912 4.91876 5.09248 5.10963 5.23486 5.24683 5.29205 5.41442 5.48583 5.56450 5.98535 6.25058 6.48739 6.97692 7.21317 7.31823 8.05600 8.29825 9.28855 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.011925 B = 0.004762 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.458849 B = 5878.204483 C = 7437.701798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.137 3.863 3 H 0.063 0.937 4 C 0.146 3.854 5 N -0.745 5.745 6 C -0.247 4.247 7 H 0.081 0.919 8 C -0.075 4.075 9 N -0.971 5.971 10 Si 0.977 3.023 11 H -0.277 1.277 12 H -0.298 1.298 13 H -0.275 1.275 14 N -0.696 5.696 15 C 0.600 3.400 16 O -0.576 6.576 17 C -0.053 4.053 18 C -0.202 4.202 19 C -0.002 4.002 20 N -0.268 5.268 21 C 0.157 3.843 22 C -0.151 4.151 23 C -0.149 4.149 24 C -0.156 4.156 25 N -0.271 5.271 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.372 0.628 32 H 0.249 0.751 33 H 0.408 0.592 34 H 0.164 0.836 35 H 0.224 0.776 36 H 0.050 0.950 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.106 0.894 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.110 0.890 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.925 -8.064 18.857 21.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.032 3.968 3 H 0.082 0.918 4 C 0.020 3.980 5 N -0.388 5.388 6 C -0.378 4.378 7 H 0.099 0.901 8 C -0.267 4.267 9 N -0.621 5.621 10 Si 0.806 3.194 11 H -0.203 1.203 12 H -0.224 1.224 13 H -0.201 1.201 14 N -0.345 5.345 15 C 0.386 3.614 16 O -0.455 6.455 17 C -0.211 4.211 18 C -0.230 4.230 19 C -0.145 4.145 20 N -0.058 5.058 21 C 0.077 3.923 22 C -0.209 4.209 23 C -0.206 4.206 24 C -0.214 4.214 25 N -0.108 5.108 26 H 0.071 0.929 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.204 0.796 32 H 0.058 0.942 33 H 0.243 0.757 34 H 0.182 0.818 35 H 0.240 0.760 36 H 0.069 0.931 37 H 0.127 0.873 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.124 0.876 41 H 0.076 0.924 42 H 0.107 0.893 43 H 0.129 0.871 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.014 -8.424 18.091 21.506 hybrid contribution 1.027 0.453 -0.347 1.175 sum -6.987 -7.971 17.744 20.669 Atomic orbital electron populations 1.22001 0.92318 1.03075 1.02919 1.21221 0.95678 0.96258 0.83618 0.91834 1.21134 0.84040 0.97938 0.94925 1.42560 1.01893 1.70032 1.24330 1.19641 0.89976 1.28591 0.99629 0.90123 1.25616 0.97513 1.03004 1.00607 1.69865 1.06953 1.52812 1.32480 0.85164 0.76928 0.78604 0.78749 1.20326 1.22399 1.20073 1.45852 1.65409 1.14481 1.08782 1.17241 0.76541 0.85351 0.82302 1.90696 1.53139 1.16196 1.85459 1.21910 1.10877 0.91951 0.96344 1.21965 1.07902 1.01747 0.91398 1.23277 1.05140 0.85404 1.00630 1.46306 1.43577 1.11068 1.04840 1.21487 0.96982 0.77506 0.96291 1.22231 0.96619 1.02747 0.99302 1.21983 1.02189 1.00204 0.96248 1.22279 0.93872 1.05660 0.99595 1.73478 1.15626 1.16707 1.04941 0.92887 0.89509 0.91126 0.94440 0.93788 0.79627 0.94195 0.75691 0.81845 0.75976 0.93076 0.87271 0.90157 0.94120 0.87559 0.92449 0.89309 0.87110 0.93309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 9.48 71.98 0.68 -3.51 16 2 C 0.14 5.13 2.73 44.99 0.12 5.25 16 3 H 0.06 2.69 7.58 -2.39 -0.02 2.68 16 4 C 0.15 6.02 5.82 86.38 0.50 6.53 16 5 N -0.75 -39.55 5.43 -343.47 -1.87 -41.42 16 6 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 7 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 8 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 9 N -0.97 -61.72 13.06 21.65 0.28 -61.44 16 10 Si 0.98 46.96 29.55 68.60 2.03 48.98 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 13 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 14 N -0.70 -27.19 4.51 -445.55 -2.01 -29.20 16 15 C 0.60 24.62 7.79 86.75 0.68 25.30 16 16 O -0.58 -26.12 16.59 -3.91 -0.06 -26.19 16 17 C -0.05 -1.91 7.13 42.46 0.30 -1.61 16 18 C -0.20 -5.95 10.81 22.41 0.24 -5.71 16 19 C 0.00 -0.04 10.52 83.54 0.88 0.84 16 20 N -0.27 -6.68 3.16 -307.72 -0.97 -7.65 16 21 C 0.16 2.68 1.21 3.60 0.00 2.68 16 22 C -0.15 -1.69 8.70 71.98 0.63 -1.07 16 23 C -0.15 -3.06 8.00 71.98 0.58 -2.48 16 24 C -0.16 -1.83 8.27 71.98 0.60 -1.23 16 25 N -0.27 -9.07 10.61 -48.17 -0.51 -9.59 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.37 21.73 7.33 -92.70 -0.68 21.05 16 32 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 33 H 0.41 16.08 8.33 -92.71 -0.77 15.31 16 34 H 0.16 4.45 8.06 -2.91 -0.02 4.43 16 35 H 0.22 2.46 7.47 -2.91 -0.02 2.44 16 36 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.06 1.37 8.00 -2.39 -0.02 1.35 16 42 H 0.09 0.67 7.27 -2.39 -0.02 0.65 16 43 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -77.82 368.08 2.94 -74.88 By element: Atomic # 1 Polarization: 44.31 SS G_CDS: -0.46 Total: 43.85 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 6.52 Total: 7.77 kcal Atomic # 7 Polarization: -144.22 SS G_CDS: -5.08 Total: -149.30 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.06 Total: -26.19 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.98 kcal Total: -77.82 2.94 -74.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754228094.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.008 kcal (2) G-P(sol) polarization free energy of solvation -77.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds