Wall clock time and date at job start Tue Mar 31 2020 03:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47117 * 2 1 4 4 N 1.46501 * 109.47206 * 240.00349 * 2 1 3 5 5 C 1.36938 * 119.99999 * 84.99617 * 4 2 1 6 6 H 1.08000 * 120.00173 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00074 * 180.02562 * 5 4 2 8 8 N 1.31623 * 119.99843 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00390 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46771 * 359.97438 * 9 7 5 11 11 H 1.48489 * 109.47353 * 119.99658 * 9 7 5 12 12 H 1.48502 * 109.47247 * 240.00117 * 9 7 5 13 13 C 1.52994 * 109.47477 * 120.00344 * 2 1 3 14 14 H 1.08993 * 109.47387 * 185.00355 * 13 2 1 15 15 C 1.52997 * 109.47384 * 64.99801 * 13 2 1 16 16 N 1.46505 * 109.46845 * 304.99906 * 13 2 1 17 17 C 1.34777 * 120.00115 * 204.99901 * 16 13 2 18 18 O 1.21288 * 119.99593 * 0.02562 * 17 16 13 19 19 C 1.50697 * 120.00369 * 180.02562 * 17 16 13 20 20 C 1.52997 * 109.47466 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.47212 * 179.97438 * 20 19 17 22 22 C 1.35320 * 126.12567 * 84.68919 * 21 20 19 23 23 C 1.39869 * 107.91823 * 179.90311 * 22 21 20 24 24 N 1.30836 * 108.20532 * 0.36581 * 23 22 21 25 25 N 1.34949 * 126.12770 * 264.99944 * 21 20 19 26 26 C 1.46496 * 126.03563 * 359.94595 * 25 21 20 27 27 H 1.09004 * 109.47117 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47095 * 299.99639 * 1 2 3 29 29 H 1.09000 * 109.47150 * 59.99968 * 1 2 3 30 30 H 0.96998 * 119.99927 * 265.00365 * 4 2 1 31 31 H 0.97001 * 120.00046 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47296 * 59.99894 * 15 13 2 33 33 H 1.09000 * 109.47256 * 180.02562 * 15 13 2 34 34 H 1.09006 * 109.47005 * 300.00524 * 15 13 2 35 35 H 0.97003 * 120.00244 * 24.99931 * 16 13 2 36 36 H 1.09002 * 109.47120 * 59.99760 * 19 17 16 37 37 H 1.08998 * 109.46862 * 300.00562 * 19 17 16 38 38 H 1.09002 * 109.47153 * 59.99773 * 20 19 17 39 39 H 1.09001 * 109.46832 * 299.99964 * 20 19 17 40 40 H 1.08004 * 126.03532 * 0.03520 * 22 21 20 41 41 H 1.07998 * 125.89362 * 180.14155 * 23 22 21 42 42 H 1.08994 * 109.47463 * 89.99820 * 26 25 21 43 43 H 1.09002 * 109.47103 * 209.99935 * 26 25 21 44 44 H 1.09004 * 109.47209 * 329.99441 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1491 -0.0073 -2.3758 6 1 1.8926 1.0406 -2.4242 7 6 2.6113 -0.6617 -3.5093 8 7 2.9244 -1.9388 -3.4502 9 14 2.7903 0.2703 -5.1183 10 1 2.3763 1.6827 -4.9208 11 1 4.2071 0.2266 -5.5607 12 1 1.9291 -0.3574 -6.1525 13 6 2.0401 -0.7213 1.2491 14 1 3.1263 -0.6443 1.2951 15 6 1.6353 -2.1955 1.1879 16 7 1.4559 -0.1037 2.4423 17 6 2.0913 -0.1938 3.6275 18 8 3.1470 -0.7859 3.7060 19 6 1.4902 0.4409 4.8550 20 6 2.4046 0.1941 6.0566 21 6 1.8038 0.8294 7.2839 22 6 0.8734 0.2748 8.0951 23 6 0.5901 1.1903 9.1140 24 7 1.3182 2.2593 8.9170 25 7 2.0928 2.0556 7.7676 26 6 3.0482 3.0057 7.1926 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.2490 -1.6317 -1.1527 31 1 3.2470 -2.3962 -4.2424 32 1 2.0699 -2.6550 0.3001 33 1 1.9984 -2.7092 2.0780 34 1 0.5490 -2.2724 1.1419 35 1 0.6118 0.3701 2.3794 36 1 0.5106 0.0035 5.0475 37 1 1.3838 1.5137 4.6941 38 1 3.3841 0.6318 5.8638 39 1 2.5114 -0.8787 6.2175 40 1 0.4298 -0.7029 7.9778 41 1 -0.1114 1.0418 9.9215 42 1 2.5366 3.6452 6.4734 43 1 3.4730 3.6195 7.9869 44 1 3.8461 2.4592 6.6897 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755239022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:44 Heat of formation + Delta-G solvation = 43.903587 kcal Electronic energy + Delta-G solvation = -23242.100053 eV Core-core repulsion = 19810.403257 eV Total energy + Delta-G solvation = -3431.696797 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.49345 -39.79488 -37.05650 -34.32834 -33.93253 -33.22102 -31.84326 -29.96469 -28.92263 -28.24018 -26.99201 -25.14073 -24.32856 -22.94490 -21.38806 -20.38309 -19.85215 -19.20587 -17.65080 -17.32444 -16.49968 -15.86178 -15.74511 -15.31778 -14.78872 -14.60162 -14.35252 -14.06119 -13.89954 -13.57998 -13.37662 -13.09656 -12.85301 -12.68999 -12.51654 -12.42546 -12.27524 -11.96150 -11.66757 -11.42157 -11.31703 -10.97857 -10.86799 -10.84782 -10.50492 -10.27290 -9.99785 -9.86928 -9.67708 -9.47779 -8.98277 -8.83688 -8.75512 -7.03936 -5.81889 -3.11542 1.59384 2.26063 2.58951 2.71041 3.28848 3.40304 3.46062 3.48054 4.28501 4.31868 4.55698 4.65863 4.66948 4.84414 4.90618 4.98391 5.12026 5.21730 5.29848 5.36016 5.44692 5.51433 5.54511 5.59774 5.61918 5.75662 5.79763 5.96826 6.03815 6.12275 6.25969 6.36814 6.41232 6.44028 6.60135 6.68190 6.74426 6.88580 7.03792 7.46548 7.64343 7.65668 8.32716 8.37062 9.47971 10.03245 10.37931 11.40719 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.033159 B = 0.002500 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.218313 B =11197.730338 C =11430.827051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.168 3.832 3 H 0.051 0.949 4 N -0.720 5.720 5 C -0.241 4.241 6 H 0.071 0.929 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.291 1.291 13 C 0.135 3.865 14 H 0.087 0.913 15 C -0.159 4.159 16 N -0.719 5.719 17 C 0.510 3.490 18 O -0.543 6.543 19 C -0.134 4.134 20 C -0.042 4.042 21 C 0.089 3.911 22 C -0.273 4.273 23 C 0.045 3.955 24 N -0.302 5.302 25 N -0.372 5.372 26 C 0.096 3.904 27 H 0.053 0.947 28 H 0.032 0.968 29 H 0.057 0.943 30 H 0.386 0.614 31 H 0.255 0.745 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.398 0.602 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.148 0.852 41 H 0.182 0.818 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.104 6.097 22.044 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.057 3.943 3 H 0.069 0.931 4 N -0.363 5.363 5 C -0.372 4.372 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.219 1.219 13 C 0.030 3.970 14 H 0.106 0.894 15 C -0.217 4.217 16 N -0.371 5.371 17 C 0.296 3.704 18 O -0.420 6.420 19 C -0.175 4.175 20 C -0.082 4.082 21 C -0.038 4.038 22 C -0.302 4.302 23 C -0.140 4.140 24 N -0.124 5.124 25 N -0.154 5.154 26 C -0.045 4.045 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.222 0.778 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.234 0.766 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.165 0.835 41 H 0.199 0.801 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.908 7.074 22.304 23.723 hybrid contribution -0.571 -0.379 -1.284 1.456 sum -4.479 6.694 21.020 22.510 Atomic orbital electron populations 1.22539 0.99338 1.01276 0.99721 1.20357 0.92158 0.95541 0.86215 0.93148 1.42465 1.78206 1.10810 1.04850 1.19259 1.36829 0.93940 0.87134 0.91097 1.24752 1.01959 0.96004 0.98130 1.69668 1.50704 1.08657 1.28880 0.86115 0.77350 0.78755 0.83923 1.20578 1.21827 1.21858 1.21334 0.98998 0.92898 0.83720 0.89444 1.22136 1.01485 0.95820 1.02273 1.46282 1.25788 1.56585 1.08488 1.20499 0.85013 0.80283 0.84627 1.90719 1.22598 1.43088 1.85640 1.21612 1.00849 1.02497 0.92556 1.19987 0.98187 1.02143 0.87837 1.21137 0.98220 0.86863 0.97618 1.21281 1.06053 1.03442 0.99472 1.23832 0.99126 0.91468 0.99576 1.77366 1.09499 1.23611 1.01880 1.48531 1.33230 1.12748 1.20921 1.21896 0.91001 0.92342 0.99278 0.92787 0.94889 0.92401 0.77769 0.93460 0.90534 0.93104 0.92557 0.76639 0.88292 0.89111 0.89825 0.88201 0.83472 0.80081 0.90568 0.89269 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 9.01 37.16 0.33 -2.38 16 2 C 0.17 3.12 2.93 -67.93 -0.20 2.92 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 N -0.72 -17.27 5.03 -53.43 -0.27 -17.54 16 5 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 9 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 C 0.14 2.22 2.62 -67.93 -0.18 2.05 16 14 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 15 C -0.16 -2.60 9.00 37.16 0.33 -2.26 16 16 N -0.72 -9.10 4.99 -53.81 -0.27 -9.37 16 17 C 0.51 6.43 7.79 -10.99 -0.09 6.34 16 18 O -0.54 -8.98 15.65 5.55 0.09 -8.90 16 19 C -0.13 -1.15 5.68 -27.89 -0.16 -1.30 16 20 C -0.04 -0.37 4.79 -27.88 -0.13 -0.51 16 21 C 0.09 0.85 6.19 -82.26 -0.51 0.34 16 22 C -0.27 -2.51 10.72 -40.01 -0.43 -2.94 16 23 C 0.05 0.43 12.03 -17.37 -0.21 0.22 16 24 N -0.30 -3.44 12.58 30.62 0.39 -3.05 16 25 N -0.37 -3.70 4.01 -63.89 -0.26 -3.96 16 26 C 0.10 0.64 11.27 59.84 0.67 1.32 16 27 H 0.05 0.89 6.56 -51.93 -0.34 0.55 16 28 H 0.03 0.40 6.29 -51.93 -0.33 0.08 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.39 9.83 5.77 -40.82 -0.24 9.60 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.08 1.42 6.29 -51.93 -0.33 1.09 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.85 6.56 -51.93 -0.34 0.51 16 35 H 0.40 4.07 6.58 -40.82 -0.27 3.80 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.76 6.90 -51.93 -0.36 0.40 16 39 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 40 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.18 1.12 8.06 -52.49 -0.42 0.69 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.49 6.97 -51.93 -0.36 0.12 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -33.57 360.44 -6.71 -40.28 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -6.72 Total: 10.27 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -0.80 Total: -3.27 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: 0.32 Total: -60.79 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.57 -6.71 -40.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755239022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.185 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds