Wall clock time and date at job start Tue Mar 31 2020 03:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46885 * 2 1 4 4 C 1.52995 * 109.47322 * 239.99810 * 2 1 3 5 5 N 1.46506 * 109.46994 * 185.00347 * 4 2 1 6 6 C 1.46506 * 119.99648 * 269.99796 * 5 4 2 7 7 C 1.34773 * 120.00045 * 90.00465 * 5 4 2 8 8 O 1.21280 * 119.99971 * 359.97438 * 7 5 4 9 9 C 1.50703 * 119.99928 * 180.02562 * 7 5 4 10 10 C 1.52999 * 109.46968 * 179.97438 * 9 7 5 11 11 C 1.50703 * 109.46620 * 179.97438 * 10 9 7 12 12 C 1.34669 * 126.59045 * 84.95969 * 11 10 9 13 13 N 1.34128 * 108.01780 * 180.02562 * 12 11 10 14 14 C 1.30495 * 109.25774 * 359.72199 * 13 12 11 15 15 N 1.35045 * 108.69990 * 0.44365 * 14 13 12 16 16 C 1.46499 * 126.39849 * 179.82112 * 15 14 13 17 17 N 1.46502 * 109.46665 * 119.99954 * 2 1 3 18 18 C 1.36940 * 120.00098 * 274.99800 * 17 2 1 19 19 H 1.08004 * 119.99509 * 0.02562 * 18 17 2 20 20 C 1.38806 * 119.99974 * 179.97438 * 18 17 2 21 21 N 1.31624 * 120.00073 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00126 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47069 * 89.99894 * 22 20 18 24 24 H 1.48505 * 109.46989 * 209.99445 * 22 20 18 25 25 H 1.48493 * 109.47077 * 329.99638 * 22 20 18 26 26 H 1.09004 * 109.47079 * 60.00480 * 1 2 3 27 27 H 1.09007 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47781 * 300.00363 * 1 2 3 29 29 H 1.08994 * 109.47200 * 65.00269 * 4 2 1 30 30 H 1.08997 * 109.47463 * 305.00160 * 4 2 1 31 31 H 1.08995 * 109.47245 * 270.00352 * 6 5 4 32 32 H 1.08999 * 109.47017 * 30.00079 * 6 5 4 33 33 H 1.09000 * 109.46465 * 149.99926 * 6 5 4 34 34 H 1.08996 * 109.47010 * 59.99518 * 9 7 5 35 35 H 1.09000 * 109.46804 * 299.99611 * 9 7 5 36 36 H 1.08996 * 109.47442 * 60.00036 * 10 9 7 37 37 H 1.09006 * 109.46894 * 299.99387 * 10 9 7 38 38 H 1.08000 * 125.99191 * 0.02748 * 12 11 10 39 39 H 1.07997 * 125.65170 * 180.29145 * 14 13 12 40 40 H 1.09002 * 109.47391 * 269.69091 * 16 15 14 41 41 H 1.09001 * 109.46813 * 149.69147 * 16 15 14 42 42 H 1.09004 * 109.47041 * 29.69274 * 16 15 14 43 43 H 0.97005 * 120.00171 * 95.00077 * 17 2 1 44 44 H 0.97000 * 120.00530 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.3344 0.2341 -1.7611 7 6 4.0757 -1.8987 -0.6114 8 8 3.3850 -2.7764 -0.1387 9 6 5.5777 -2.0066 -0.5504 10 6 5.9673 -3.3084 0.1526 11 6 7.4693 -3.4165 0.2130 12 6 8.2758 -2.8793 1.1481 13 7 9.5404 -3.2050 0.8419 14 6 9.5476 -3.9286 -0.2440 15 7 8.2758 -4.0793 -0.6724 16 6 7.8402 -4.8190 -1.8595 17 7 2.0182 -0.6906 1.1962 18 6 2.1490 -0.0075 2.3758 19 1 1.8918 1.0404 2.4243 20 6 2.6111 -0.6620 3.5093 21 7 2.7363 -0.0055 4.6433 22 14 3.0552 -2.4745 3.4255 23 1 4.4881 -2.6167 3.0623 24 1 2.8151 -3.1047 4.7486 25 1 2.2157 -3.1429 2.3991 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.7517 -0.1584 -2.1369 30 1 1.6054 -1.7198 -1.2951 31 1 4.5426 0.0093 -2.8071 32 1 3.8091 1.1866 -1.6917 33 1 5.2722 0.2952 -1.2089 34 1 5.9805 -1.1595 0.0048 35 1 5.9834 -2.0040 -1.5621 36 1 5.5645 -4.1557 -0.4022 37 1 5.5616 -3.3105 1.1643 38 1 7.9598 -2.2896 1.9959 39 1 10.4255 -4.3371 -0.7224 40 1 7.8160 -4.1473 -2.7176 41 1 6.8437 -5.2260 -1.6885 42 1 8.5369 -5.6340 -2.0556 43 1 2.2489 -1.6318 1.1527 44 1 3.0596 -0.4627 5.4353 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755613985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:23 Heat of formation + Delta-G solvation = 41.286908 kcal Electronic energy + Delta-G solvation = -24679.971704 eV Core-core repulsion = 21248.161440 eV Total energy + Delta-G solvation = -3431.810264 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.12528 -39.74005 -36.29903 -34.56899 -34.26765 -33.51655 -31.92529 -29.46872 -28.84969 -27.15609 -27.09195 -25.88351 -23.86486 -23.07396 -21.44924 -20.11919 -19.80741 -18.89941 -17.68826 -17.23478 -16.49795 -16.04274 -15.77232 -15.57513 -14.71515 -14.68699 -14.08979 -13.68519 -13.50984 -13.33957 -13.16126 -13.05278 -12.92648 -12.62369 -12.48544 -12.39662 -12.29586 -12.13231 -11.90031 -11.51973 -11.41302 -11.14830 -10.71725 -10.60009 -10.48468 -9.95787 -9.88929 -9.64979 -9.52948 -9.40282 -8.81731 -8.33932 -8.28351 -7.11877 -5.66197 -2.99559 1.96295 2.67229 2.92985 3.14812 3.33395 3.51911 3.59126 3.71012 4.47151 4.51726 4.64376 4.74253 4.81991 4.92393 4.95359 5.08168 5.12714 5.21944 5.29546 5.38298 5.44482 5.50801 5.60311 5.67317 5.69573 5.78656 5.87232 5.91591 5.92906 6.13429 6.19001 6.26601 6.38895 6.47120 6.70977 6.75961 6.81479 7.05386 7.12859 7.64779 8.05150 8.12608 8.48933 8.55373 9.38346 10.10804 10.33116 11.51896 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.014839 B = 0.005398 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.493097 B = 5186.309885 C = 6341.438670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.160 3.840 3 H 0.052 0.948 4 C 0.106 3.894 5 N -0.606 5.606 6 C 0.082 3.918 7 C 0.521 3.479 8 O -0.536 6.536 9 C -0.130 4.130 10 C -0.033 4.033 11 C -0.017 4.017 12 C -0.022 4.022 13 N -0.493 5.493 14 C 0.171 3.829 15 N -0.461 5.461 16 C 0.071 3.929 17 N -0.747 5.747 18 C -0.239 4.239 19 H 0.085 0.915 20 C 0.005 3.995 21 N -0.937 5.937 22 Si 0.877 3.123 23 H -0.282 1.282 24 H -0.298 1.298 25 H -0.267 1.267 26 H 0.038 0.962 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.171 0.829 39 H 0.203 0.797 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.376 0.624 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.880 -5.978 -19.556 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.049 3.951 3 H 0.070 0.930 4 C -0.017 4.017 5 N -0.338 5.338 6 C -0.062 4.062 7 C 0.309 3.691 8 O -0.413 6.413 9 C -0.170 4.170 10 C -0.072 4.072 11 C -0.131 4.131 12 C -0.170 4.170 13 N -0.210 5.210 14 C -0.110 4.110 15 N -0.146 5.146 16 C -0.072 4.072 17 N -0.394 5.394 18 C -0.369 4.369 19 H 0.103 0.897 20 C -0.191 4.191 21 N -0.585 5.585 22 Si 0.708 3.292 23 H -0.209 1.209 24 H -0.225 1.225 25 H -0.193 1.193 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.188 0.812 39 H 0.219 0.781 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.214 0.786 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.186 -6.131 -18.825 21.825 hybrid contribution -0.344 -1.331 -0.397 1.430 sum 8.842 -7.461 -19.221 22.435 Atomic orbital electron populations 1.22385 0.98649 1.00997 1.00472 1.20588 0.92154 0.95824 0.86528 0.93036 1.21908 0.79156 1.02157 0.98500 1.47624 1.06914 1.20893 1.58411 1.21743 0.95844 0.91166 0.97446 1.20412 0.90226 0.81449 0.77016 1.90659 1.64814 1.40162 1.45637 1.21628 0.93065 1.00122 1.02232 1.19839 0.86418 0.97062 1.03852 1.21301 0.94359 1.03103 0.94367 1.22199 0.88187 1.05261 1.01319 1.70277 1.22800 1.14781 1.13191 1.24886 0.87090 1.03199 0.95850 1.45307 1.07646 1.40219 1.21382 1.22032 1.02513 0.96674 0.85977 1.43050 1.79372 1.10530 1.06481 1.19057 1.36539 0.95305 0.86036 0.89671 1.24610 1.01565 0.97395 0.95500 1.69713 1.53034 1.35576 1.00223 0.86629 0.79149 0.87096 0.76321 1.20887 1.22480 1.19266 0.94302 0.93491 0.92153 0.90721 0.90267 0.93192 0.90862 0.91097 0.88129 0.89729 0.90627 0.88305 0.81155 0.78076 0.90555 0.89532 0.89502 0.78642 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.49 37.16 0.35 -2.55 16 2 C 0.16 3.08 3.20 -67.93 -0.22 2.87 16 3 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 4 C 0.11 1.65 5.14 -4.04 -0.02 1.62 16 5 N -0.61 -9.12 2.77 -181.57 -0.50 -9.63 16 6 C 0.08 0.89 10.24 59.85 0.61 1.50 16 7 C 0.52 8.83 6.97 -10.99 -0.08 8.75 16 8 O -0.54 -11.11 13.14 5.56 0.07 -11.04 16 9 C -0.13 -1.77 4.23 -27.88 -0.12 -1.89 16 10 C -0.03 -0.48 4.84 -27.88 -0.13 -0.61 16 11 C -0.02 -0.24 6.21 -81.60 -0.51 -0.74 16 12 C -0.02 -0.34 11.79 -17.81 -0.21 -0.55 16 13 N -0.49 -7.47 11.25 -14.67 -0.17 -7.63 16 14 C 0.17 1.95 12.56 -90.38 -1.14 0.82 16 15 N -0.46 -5.03 3.15 -121.36 -0.38 -5.41 16 16 C 0.07 0.46 11.00 59.85 0.66 1.12 16 17 N -0.75 -18.46 4.33 -53.43 -0.23 -18.69 16 18 C -0.24 -6.95 10.41 -15.06 -0.16 -7.11 16 19 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 20 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 21 N -0.94 -30.36 13.97 55.49 0.78 -29.59 16 22 Si 0.88 23.96 27.58 -169.99 -4.69 19.27 16 23 H -0.28 -7.42 6.69 56.52 0.38 -7.05 16 24 H -0.30 -8.24 7.11 56.52 0.40 -7.84 16 25 H -0.27 -7.32 6.52 56.52 0.37 -6.95 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 30 H 0.08 1.33 7.42 -51.93 -0.39 0.94 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 33 H 0.07 0.75 6.44 -51.93 -0.33 0.41 16 34 H 0.10 1.41 7.40 -51.93 -0.38 1.02 16 35 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 36 H 0.08 1.01 7.05 -51.93 -0.37 0.65 16 37 H 0.10 1.77 7.68 -51.93 -0.40 1.37 16 38 H 0.17 2.64 8.06 -52.49 -0.42 2.22 16 39 H 0.20 1.43 8.06 -52.49 -0.42 1.00 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.57 7.12 -51.93 -0.37 0.20 16 42 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.38 9.60 2.88 -40.82 -0.12 9.48 16 44 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 LS Contribution 357.75 15.07 5.39 5.39 Total: -1.00 -37.86 357.75 -7.81 -45.67 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.03 Total: 8.38 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -1.05 Total: 3.27 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -0.51 Total: -70.95 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.07 Total: -11.04 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -4.69 Total: 19.27 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.86 -7.81 -45.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755613985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.957 kcal (2) G-P(sol) polarization free energy of solvation -37.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds