Wall clock time and date at job start Tue Mar 31 2020 03:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46885 * 2 1 4 4 C 1.52995 * 109.47322 * 239.99810 * 2 1 3 5 5 N 1.46506 * 109.46994 * 185.00347 * 4 2 1 6 6 C 1.46506 * 119.99648 * 269.99796 * 5 4 2 7 7 C 1.34773 * 120.00045 * 90.00465 * 5 4 2 8 8 O 1.21280 * 119.99971 * 359.97438 * 7 5 4 9 9 C 1.50703 * 119.99928 * 180.02562 * 7 5 4 10 10 C 1.52999 * 109.46968 * 179.97438 * 9 7 5 11 11 C 1.50703 * 109.46620 * 179.97438 * 10 9 7 12 12 C 1.34669 * 126.59045 * 84.95969 * 11 10 9 13 13 N 1.34128 * 108.01780 * 180.02562 * 12 11 10 14 14 C 1.30495 * 109.25774 * 359.72199 * 13 12 11 15 15 N 1.35045 * 108.69990 * 0.44365 * 14 13 12 16 16 C 1.46499 * 126.39849 * 179.82112 * 15 14 13 17 17 N 1.46502 * 109.46665 * 119.99954 * 2 1 3 18 18 C 1.36940 * 120.00098 * 274.99800 * 17 2 1 19 19 H 1.08004 * 119.99509 * 0.02562 * 18 17 2 20 20 C 1.38806 * 119.99974 * 179.97438 * 18 17 2 21 21 N 1.31624 * 120.00073 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00126 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47069 * 89.99894 * 22 20 18 24 24 H 1.48505 * 109.46989 * 209.99445 * 22 20 18 25 25 H 1.48493 * 109.47077 * 329.99638 * 22 20 18 26 26 H 1.09004 * 109.47079 * 60.00480 * 1 2 3 27 27 H 1.09007 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47781 * 300.00363 * 1 2 3 29 29 H 1.08994 * 109.47200 * 65.00269 * 4 2 1 30 30 H 1.08997 * 109.47463 * 305.00160 * 4 2 1 31 31 H 1.08995 * 109.47245 * 270.00352 * 6 5 4 32 32 H 1.08999 * 109.47017 * 30.00079 * 6 5 4 33 33 H 1.09000 * 109.46465 * 149.99926 * 6 5 4 34 34 H 1.08996 * 109.47010 * 59.99518 * 9 7 5 35 35 H 1.09000 * 109.46804 * 299.99611 * 9 7 5 36 36 H 1.08996 * 109.47442 * 60.00036 * 10 9 7 37 37 H 1.09006 * 109.46894 * 299.99387 * 10 9 7 38 38 H 1.08000 * 125.99191 * 0.02748 * 12 11 10 39 39 H 1.07997 * 125.65170 * 180.29145 * 14 13 12 40 40 H 1.09002 * 109.47391 * 269.69091 * 16 15 14 41 41 H 1.09001 * 109.46813 * 149.69147 * 16 15 14 42 42 H 1.09004 * 109.47041 * 29.69274 * 16 15 14 43 43 H 0.97005 * 120.00171 * 95.00077 * 17 2 1 44 44 H 0.97000 * 120.00530 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.3344 0.2341 -1.7611 7 6 4.0757 -1.8987 -0.6114 8 8 3.3850 -2.7764 -0.1387 9 6 5.5777 -2.0066 -0.5504 10 6 5.9673 -3.3084 0.1526 11 6 7.4693 -3.4165 0.2130 12 6 8.2758 -2.8793 1.1481 13 7 9.5404 -3.2050 0.8419 14 6 9.5476 -3.9286 -0.2440 15 7 8.2758 -4.0793 -0.6724 16 6 7.8402 -4.8190 -1.8595 17 7 2.0182 -0.6906 1.1962 18 6 2.1490 -0.0075 2.3758 19 1 1.8918 1.0404 2.4243 20 6 2.6111 -0.6620 3.5093 21 7 2.7363 -0.0055 4.6433 22 14 3.0552 -2.4745 3.4255 23 1 4.4881 -2.6167 3.0623 24 1 2.8151 -3.1047 4.7486 25 1 2.2157 -3.1429 2.3991 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.7517 -0.1584 -2.1369 30 1 1.6054 -1.7198 -1.2951 31 1 4.5426 0.0093 -2.8071 32 1 3.8091 1.1866 -1.6917 33 1 5.2722 0.2952 -1.2089 34 1 5.9805 -1.1595 0.0048 35 1 5.9834 -2.0040 -1.5621 36 1 5.5645 -4.1557 -0.4022 37 1 5.5616 -3.3105 1.1643 38 1 7.9598 -2.2896 1.9959 39 1 10.4255 -4.3371 -0.7224 40 1 7.8160 -4.1473 -2.7176 41 1 6.8437 -5.2260 -1.6885 42 1 8.5369 -5.6340 -2.0556 43 1 2.2489 -1.6318 1.1527 44 1 3.0596 -0.4627 5.4353 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755613985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:23 Heat of formation + Delta-G solvation = 15.997350 kcal Electronic energy + Delta-G solvation = -24681.068342 eV Core-core repulsion = 21248.161440 eV Total energy + Delta-G solvation = -3432.906902 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.07582 -41.01218 -37.82456 -36.06210 -35.25929 -34.57331 -33.93941 -31.30513 -30.02837 -28.19988 -27.78830 -27.02760 -25.53460 -24.68462 -22.39688 -21.67418 -20.84095 -20.23642 -19.63310 -18.28897 -17.56945 -17.23594 -17.04026 -16.68193 -16.44936 -15.94304 -15.53923 -14.91365 -14.78621 -14.55188 -14.52265 -14.30929 -13.90279 -13.82932 -13.74461 -13.56146 -13.49803 -13.28851 -13.14749 -13.04736 -12.87680 -12.68932 -12.32307 -12.23753 -12.15708 -11.78671 -11.78087 -11.01838 -10.97762 -10.79388 -10.50556 -9.53750 -9.37671 -9.23032 -8.04465 -5.31708 1.00595 1.30357 1.33551 1.47408 1.68750 1.88115 2.11285 2.23218 2.45196 3.28053 3.45128 3.70765 3.82291 3.87596 3.91105 3.98629 4.07400 4.14486 4.31203 4.39664 4.41637 4.46803 4.50466 4.61413 4.63225 4.69648 4.70487 4.77422 4.88067 4.91213 4.97983 5.01008 5.02524 5.25039 5.37271 5.45462 5.68107 5.70288 5.80310 6.22172 6.31815 6.47533 7.08049 7.11896 7.27076 7.95706 8.13327 9.17339 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.014839 B = 0.005398 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.493097 B = 5186.309885 C = 6341.438670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 H 0.050 0.950 4 C 0.113 3.887 5 N -0.607 5.607 6 C 0.074 3.926 7 C 0.509 3.491 8 O -0.581 6.581 9 C -0.120 4.120 10 C -0.024 4.024 11 C -0.018 4.018 12 C -0.055 4.055 13 N -0.536 5.536 14 C 0.188 3.812 15 N -0.455 5.455 16 C 0.062 3.938 17 N -0.755 5.755 18 C -0.212 4.212 19 H 0.061 0.939 20 C -0.056 4.056 21 N -0.981 5.981 22 Si 0.935 3.065 23 H -0.276 1.276 24 H -0.304 1.304 25 H -0.269 1.269 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.031 0.969 29 H 0.124 0.876 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.151 0.849 39 H 0.247 0.753 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.374 0.626 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.795 -6.772 -23.814 26.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.068 0.932 4 C -0.010 4.010 5 N -0.338 5.338 6 C -0.068 4.068 7 C 0.298 3.702 8 O -0.462 6.462 9 C -0.160 4.160 10 C -0.063 4.063 11 C -0.134 4.134 12 C -0.202 4.202 13 N -0.255 5.255 14 C -0.094 4.094 15 N -0.138 5.138 16 C -0.079 4.079 17 N -0.402 5.402 18 C -0.344 4.344 19 H 0.079 0.921 20 C -0.248 4.248 21 N -0.633 5.633 22 Si 0.766 3.234 23 H -0.202 1.202 24 H -0.231 1.231 25 H -0.195 1.195 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.142 0.858 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.142 0.858 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.169 0.831 39 H 0.263 0.737 40 H 0.115 0.885 41 H 0.103 0.897 42 H 0.135 0.865 43 H 0.211 0.789 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.088 -6.901 -23.180 26.205 hybrid contribution -0.651 -1.007 0.782 1.431 sum 9.438 -7.908 -22.399 25.560 Atomic orbital electron populations 1.22244 0.97088 1.00980 1.01333 1.20982 0.93246 0.95754 0.86202 0.93209 1.21852 0.79525 1.01653 0.98017 1.47808 1.07186 1.21190 1.57665 1.22040 0.95253 0.90214 0.99299 1.20998 0.91352 0.81402 0.76430 1.90628 1.65932 1.41955 1.47662 1.21585 0.91012 0.99197 1.04162 1.19633 0.86904 0.98180 1.01611 1.21019 0.93872 1.03528 0.94937 1.22120 0.89316 1.06772 1.02004 1.70216 1.22696 1.16999 1.15545 1.25721 0.88372 1.00983 0.94361 1.45508 1.07009 1.39456 1.21828 1.22419 1.03244 0.97639 0.84575 1.43203 1.79621 1.10524 1.06845 1.19082 1.33495 0.94317 0.87497 0.92095 1.25188 1.03290 1.00743 0.95576 1.69841 1.55584 1.36985 1.00926 0.85702 0.79159 0.83051 0.75513 1.20197 1.23137 1.19464 0.89714 0.93932 0.94999 0.85824 0.91484 0.89446 0.90168 0.91052 0.88852 0.85813 0.89527 0.92583 0.83104 0.73673 0.88474 0.89748 0.86462 0.78913 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.23 9.49 71.98 0.68 -4.55 16 2 C 0.15 5.44 3.20 44.99 0.14 5.58 16 3 H 0.05 1.86 8.08 -2.39 -0.02 1.85 16 4 C 0.11 3.16 5.14 86.38 0.44 3.61 16 5 N -0.61 -16.67 2.77 -846.76 -2.35 -19.02 16 6 C 0.07 1.33 10.24 127.77 1.31 2.64 16 7 C 0.51 16.55 6.97 87.66 0.61 17.16 16 8 O -0.58 -23.89 13.14 -3.03 -0.04 -23.93 16 9 C -0.12 -3.09 4.23 29.85 0.13 -2.96 16 10 C -0.02 -0.69 4.84 29.85 0.14 -0.55 16 11 C -0.02 -0.48 6.21 40.95 0.25 -0.22 16 12 C -0.05 -1.75 11.79 83.52 0.98 -0.77 16 13 N -0.54 -16.00 11.25 -200.32 -2.25 -18.26 16 14 C 0.19 3.78 12.56 180.26 2.26 6.05 16 15 N -0.46 -8.69 3.15 -537.88 -1.70 -10.38 16 16 C 0.06 0.55 11.00 127.77 1.41 1.95 16 17 N -0.75 -37.34 4.33 -322.95 -1.40 -38.74 16 18 C -0.21 -12.62 10.41 84.03 0.87 -11.74 16 19 H 0.06 3.87 8.06 -2.91 -0.02 3.85 16 20 C -0.06 -3.55 5.50 84.86 0.47 -3.09 16 21 N -0.98 -65.83 13.97 21.65 0.30 -65.53 16 22 Si 0.94 51.74 27.58 68.60 1.89 53.63 16 23 H -0.28 -14.77 6.69 99.48 0.67 -14.10 16 24 H -0.30 -16.92 7.11 99.48 0.71 -16.21 16 25 H -0.27 -14.79 6.52 99.48 0.65 -14.14 16 26 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 27 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.12 2.29 8.07 -2.39 -0.02 2.27 16 30 H 0.07 2.09 7.42 -2.39 -0.02 2.08 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.36 8.07 -2.39 -0.02 1.34 16 33 H 0.07 1.30 6.44 -2.39 -0.02 1.29 16 34 H 0.09 2.57 7.40 -2.39 -0.02 2.55 16 35 H 0.12 2.17 8.11 -2.39 -0.02 2.15 16 36 H 0.09 2.24 7.05 -2.39 -0.02 2.22 16 37 H 0.06 2.09 7.68 -2.38 -0.02 2.07 16 38 H 0.15 5.14 8.06 -2.91 -0.02 5.11 16 39 H 0.25 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.08 0.83 7.12 -2.39 -0.02 0.82 16 42 H 0.12 0.37 8.14 -2.38 -0.02 0.35 16 43 H 0.37 19.12 2.88 -92.70 -0.27 18.85 16 44 H 0.25 16.44 8.31 -92.71 -0.77 15.67 16 Total: -1.00 -87.43 357.75 4.79 -82.64 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.62 Total: 26.48 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 9.71 Total: 13.11 kcal Atomic # 7 Polarization: -144.54 SS G_CDS: -7.39 Total: -151.93 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.04 Total: -23.93 kcal Atomic # 14 Polarization: 51.74 SS G_CDS: 1.89 Total: 53.63 kcal Total: -87.43 4.79 -82.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755613985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.637 kcal (2) G-P(sol) polarization free energy of solvation -87.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds