Wall clock time and date at job start Tue Mar 31 2020 02:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99571 * 2 1 4 4 H 1.48506 * 109.46794 * 240.00139 * 3 2 1 5 5 H 1.48499 * 109.47186 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46933 * 119.99878 * 3 2 1 7 7 C 1.37868 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99843 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00192 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47092 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47016 * 180.02562 * 10 9 7 12 12 C 1.46849 * 111.00013 * 294.20911 * 11 10 9 13 13 C 1.53035 * 109.52135 * 174.16093 * 12 11 10 14 14 C 1.53115 * 109.28133 * 59.18335 * 13 12 11 15 15 C 1.50699 * 109.57863 * 182.40668 * 14 13 12 16 16 O 1.21288 * 119.99902 * 85.02976 * 15 14 13 17 17 N 1.34773 * 120.00161 * 265.03412 * 15 14 13 18 18 C 1.46924 * 120.62954 * 5.14075 * 17 15 14 19 19 C 1.53628 * 108.54129 * 126.36773 * 18 17 15 20 20 C 1.53037 * 109.24272 * 54.86129 * 19 18 17 21 21 C 1.53042 * 109.53466 * 298.50602 * 20 19 18 22 22 C 1.46928 * 120.63210 * 185.42120 * 17 15 14 23 23 C 1.53126 * 109.16027 * 302.34085 * 14 13 12 24 24 C 1.46850 * 110.99962 * 169.99787 * 11 10 9 25 25 H 0.96998 * 119.99920 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46798 * 59.99986 * 9 7 2 27 27 H 1.09002 * 109.46716 * 300.00156 * 9 7 2 28 28 H 1.09001 * 109.47451 * 60.00214 * 10 9 7 29 29 H 1.09002 * 109.47327 * 299.99609 * 10 9 7 30 30 H 1.09000 * 109.46211 * 294.17541 * 12 11 10 31 31 H 1.08997 * 109.46094 * 54.14333 * 12 11 10 32 32 H 1.08999 * 109.50673 * 299.23667 * 13 12 11 33 33 H 1.09007 * 109.53175 * 179.13916 * 13 12 11 34 34 H 1.08996 * 109.53053 * 62.24315 * 14 13 12 35 35 H 1.09003 * 109.58814 * 246.20119 * 18 17 15 36 36 H 1.09001 * 109.58853 * 6.62641 * 18 17 15 37 37 H 1.08997 * 109.63447 * 294.86439 * 19 18 17 38 38 H 1.09004 * 109.45426 * 174.73925 * 19 18 17 39 39 H 1.09001 * 109.45929 * 178.48855 * 20 19 18 40 40 H 1.08999 * 109.46566 * 58.52309 * 20 19 18 41 41 H 1.08995 * 109.50166 * 301.41789 * 21 20 19 42 42 H 1.08998 * 109.50070 * 181.31616 * 21 20 19 43 43 H 1.09004 * 109.58390 * 353.36982 * 22 17 15 44 44 H 1.09002 * 109.58908 * 113.79822 * 22 17 15 45 45 H 1.08998 * 109.50285 * 297.71579 * 23 14 13 46 46 H 1.08999 * 109.53893 * 177.61713 * 23 14 13 47 47 H 1.08997 * 109.46590 * 305.85667 * 24 11 10 48 48 H 1.09000 * 109.46232 * 65.83523 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 7 1.5111 -4.9341 -0.0012 12 6 0.7607 -5.1092 1.2489 13 6 -0.1035 -6.3687 1.1545 14 6 0.7965 -7.5817 0.9036 15 6 -0.0524 -8.8174 0.7506 16 8 -0.5290 -9.0959 -0.3294 17 7 -0.2822 -9.6130 1.8139 18 6 0.1929 -9.2315 3.1509 19 6 -0.9971 -9.2708 4.1218 20 6 -1.6539 -10.6517 4.0590 21 6 -2.1788 -10.9048 2.6439 22 6 -1.0072 -10.8813 1.6571 23 6 1.6026 -7.3529 -0.3780 24 6 2.4173 -6.0648 -0.2393 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5566 -0.8903 27 1 0.6249 -2.5570 0.8897 28 1 2.8721 -3.6042 0.8895 29 1 2.8721 -3.6042 -0.8906 30 1 1.4584 -5.2090 2.0804 31 1 0.1216 -4.2417 1.4134 32 1 -0.8108 -6.2640 0.3318 33 1 -0.6490 -6.5072 2.0881 34 1 1.4781 -7.7099 1.7445 35 1 0.9599 -9.9326 3.4800 36 1 0.6062 -8.2235 3.1179 37 1 -1.7242 -8.5089 3.8410 38 1 -0.6447 -9.0814 5.1358 39 1 -2.4823 -10.6922 4.7663 40 1 -0.9196 -11.4152 4.3158 41 1 -2.8948 -10.1275 2.3770 42 1 -2.6671 -11.8785 2.6057 43 1 -1.3859 -10.9621 0.6382 44 1 -0.3361 -11.7142 1.8669 45 1 0.9221 -7.2636 -1.2248 46 1 2.2765 -8.1942 -0.5399 47 1 2.9815 -5.8914 -1.1557 48 1 3.1072 -6.1602 0.5993 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053095809.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:53 Heat of formation + Delta-G solvation = -54.404870 kcal Electronic energy + Delta-G solvation = -24454.122240 eV Core-core repulsion = 21121.702812 eV Total energy + Delta-G solvation = -3332.419428 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.62492 -38.49887 -37.33734 -34.25524 -33.15224 -32.47219 -31.36984 -30.65458 -29.23421 -26.28550 -25.00997 -23.76196 -23.10726 -22.87200 -21.25865 -20.21262 -19.70149 -18.78635 -17.40588 -16.53651 -16.08573 -15.39059 -15.09650 -14.79043 -14.68856 -14.49174 -14.47156 -14.13335 -13.80956 -13.60243 -13.43689 -13.17102 -12.83985 -12.61854 -12.47605 -12.21339 -11.76821 -11.62977 -11.32846 -11.23360 -11.16121 -11.08915 -10.92095 -10.90751 -10.82956 -10.57666 -10.48238 -10.33118 -9.77764 -9.62249 -9.27199 -9.10788 -8.83521 -8.30812 -7.68201 -5.97629 -4.00120 2.56579 2.80550 3.34403 3.38935 3.41098 4.28170 4.37005 4.42440 4.52201 4.55166 4.61580 4.74913 4.84044 4.93023 4.94379 5.05163 5.17849 5.31380 5.38038 5.39478 5.44482 5.45972 5.51113 5.58909 5.60158 5.69559 5.71363 5.75318 5.80344 5.86552 5.90983 5.98301 6.12017 6.23897 6.30736 6.34920 6.40377 6.52470 6.57930 6.99370 7.23061 7.53780 7.61213 7.82482 7.92521 8.10569 8.11871 8.45553 9.07057 9.63353 11.13661 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.028031 B = 0.002873 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.637614 B = 9744.513462 C =10192.053493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.538 5.538 12 C 0.058 3.942 13 C -0.102 4.102 14 C -0.106 4.106 15 C 0.524 3.476 16 O -0.537 6.537 17 N -0.617 5.617 18 C 0.104 3.896 19 C -0.136 4.136 20 C -0.119 4.119 21 C -0.135 4.135 22 C 0.110 3.890 23 C -0.098 4.098 24 C 0.057 3.943 25 H 0.261 0.739 26 H 0.025 0.975 27 H 0.017 0.983 28 H 0.019 0.981 29 H 0.061 0.939 30 H 0.026 0.974 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.603 -23.169 9.271 24.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.063 4.063 11 N -0.263 5.263 12 C -0.070 4.070 13 C -0.140 4.140 14 C -0.127 4.127 15 C 0.313 3.687 16 O -0.413 6.413 17 N -0.351 5.351 18 C -0.019 4.019 19 C -0.175 4.175 20 C -0.157 4.157 21 C -0.173 4.173 22 C -0.013 4.013 23 C -0.136 4.136 24 C -0.072 4.072 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.103 0.897 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.346 -23.184 8.289 24.658 hybrid contribution 1.059 0.866 0.869 1.621 sum -0.287 -22.318 9.158 24.126 Atomic orbital electron populations 1.69963 1.06002 1.26665 1.50590 1.24989 0.94828 0.99138 0.95338 0.86665 0.79576 0.83211 0.78568 1.20234 1.21291 1.20331 1.21160 0.92931 0.91109 1.50946 0.92881 1.19098 0.93978 0.90072 0.97793 1.22322 0.96714 0.88316 0.98934 1.62002 1.27502 1.02435 1.34354 1.22071 0.96779 0.97802 0.90346 1.21551 0.97788 0.92441 1.02238 1.21454 0.97534 0.92949 1.00801 1.20844 0.80393 0.84147 0.83328 1.90675 1.50986 1.73122 1.26546 1.48168 1.57112 1.21690 1.08176 1.21907 0.96351 1.01770 0.81907 1.22003 0.97997 0.98056 0.99409 1.21513 1.00389 0.97026 0.96785 1.21915 0.97928 1.02426 0.95067 1.21563 0.93406 0.85150 1.01153 1.21469 0.98563 0.96754 0.96812 1.22049 0.93877 0.90809 1.00433 0.92952 0.95662 0.96517 0.96287 0.92046 0.95573 0.89038 0.90194 0.91750 0.89702 0.91418 0.89089 0.91157 0.90590 0.91660 0.91842 0.91392 0.90870 0.89019 0.91806 0.89724 0.91999 0.90668 0.95680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.73 4.90 -27.88 -0.14 0.59 16 10 C 0.06 1.35 4.90 -3.83 -0.02 1.33 16 11 N -0.54 -9.83 4.66 -234.67 -1.09 -10.92 16 12 C 0.06 0.95 5.29 -3.83 -0.02 0.93 16 13 C -0.10 -1.42 5.29 -26.65 -0.14 -1.56 16 14 C -0.11 -1.33 1.79 -91.65 -0.16 -1.50 16 15 C 0.52 6.99 6.70 -10.99 -0.07 6.92 16 16 O -0.54 -9.13 15.64 5.55 0.09 -9.05 16 17 N -0.62 -6.37 2.97 -172.49 -0.51 -6.88 16 18 C 0.10 0.79 6.18 -3.48 -0.02 0.77 16 19 C -0.14 -0.91 6.10 -26.39 -0.16 -1.07 16 20 C -0.12 -0.74 5.88 -26.69 -0.16 -0.90 16 21 C -0.14 -0.99 6.08 -26.61 -0.16 -1.15 16 22 C 0.11 0.99 6.44 -3.71 -0.02 0.97 16 23 C -0.10 -1.35 5.08 -26.64 -0.14 -1.48 16 24 C 0.06 0.85 5.46 -3.83 -0.02 0.83 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.45 6.43 -51.93 -0.33 0.12 16 28 H 0.02 0.40 8.12 -51.93 -0.42 -0.03 16 29 H 0.06 1.29 7.99 -51.93 -0.41 0.87 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 1.71 6.21 -51.93 -0.32 1.39 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 0.76 8.02 -51.93 -0.42 0.35 16 34 H 0.08 0.90 6.18 -51.93 -0.32 0.58 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.69 5.44 -51.93 -0.28 0.41 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 1.00 7.00 -51.93 -0.36 0.63 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.08 1.36 7.78 -51.93 -0.40 0.95 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 1.10 8.01 -51.93 -0.42 0.69 16 48 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 365.14 15.07 5.50 5.50 Total: -1.00 -32.29 365.14 -10.68 -42.97 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -8.73 Total: -3.20 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -1.65 Total: -8.88 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.87 Total: -44.03 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.29 -10.68 -42.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053095809.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.431 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds