Wall clock time and date at job start Tue Mar 31 2020 02:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99571 * 2 1 4 4 H 1.48506 * 109.46794 * 240.00139 * 3 2 1 5 5 H 1.48499 * 109.47186 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46933 * 119.99878 * 3 2 1 7 7 C 1.37868 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99843 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00192 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47092 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47016 * 180.02562 * 10 9 7 12 12 C 1.46849 * 111.00013 * 294.20911 * 11 10 9 13 13 C 1.53035 * 109.52135 * 174.16093 * 12 11 10 14 14 C 1.53115 * 109.28133 * 59.18335 * 13 12 11 15 15 C 1.50699 * 109.57863 * 182.40668 * 14 13 12 16 16 O 1.21288 * 119.99902 * 85.02976 * 15 14 13 17 17 N 1.34773 * 120.00161 * 265.03412 * 15 14 13 18 18 C 1.46924 * 120.62954 * 5.14075 * 17 15 14 19 19 C 1.53628 * 108.54129 * 126.36773 * 18 17 15 20 20 C 1.53037 * 109.24272 * 54.86129 * 19 18 17 21 21 C 1.53042 * 109.53466 * 298.50602 * 20 19 18 22 22 C 1.46928 * 120.63210 * 185.42120 * 17 15 14 23 23 C 1.53126 * 109.16027 * 302.34085 * 14 13 12 24 24 C 1.46850 * 110.99962 * 169.99787 * 11 10 9 25 25 H 0.96998 * 119.99920 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46798 * 59.99986 * 9 7 2 27 27 H 1.09002 * 109.46716 * 300.00156 * 9 7 2 28 28 H 1.09001 * 109.47451 * 60.00214 * 10 9 7 29 29 H 1.09002 * 109.47327 * 299.99609 * 10 9 7 30 30 H 1.09000 * 109.46211 * 294.17541 * 12 11 10 31 31 H 1.08997 * 109.46094 * 54.14333 * 12 11 10 32 32 H 1.08999 * 109.50673 * 299.23667 * 13 12 11 33 33 H 1.09007 * 109.53175 * 179.13916 * 13 12 11 34 34 H 1.08996 * 109.53053 * 62.24315 * 14 13 12 35 35 H 1.09003 * 109.58814 * 246.20119 * 18 17 15 36 36 H 1.09001 * 109.58853 * 6.62641 * 18 17 15 37 37 H 1.08997 * 109.63447 * 294.86439 * 19 18 17 38 38 H 1.09004 * 109.45426 * 174.73925 * 19 18 17 39 39 H 1.09001 * 109.45929 * 178.48855 * 20 19 18 40 40 H 1.08999 * 109.46566 * 58.52309 * 20 19 18 41 41 H 1.08995 * 109.50166 * 301.41789 * 21 20 19 42 42 H 1.08998 * 109.50070 * 181.31616 * 21 20 19 43 43 H 1.09004 * 109.58390 * 353.36982 * 22 17 15 44 44 H 1.09002 * 109.58908 * 113.79822 * 22 17 15 45 45 H 1.08998 * 109.50285 * 297.71579 * 23 14 13 46 46 H 1.08999 * 109.53893 * 177.61713 * 23 14 13 47 47 H 1.08997 * 109.46590 * 305.85667 * 24 11 10 48 48 H 1.09000 * 109.46232 * 65.83523 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 7 1.5111 -4.9341 -0.0012 12 6 0.7607 -5.1092 1.2489 13 6 -0.1035 -6.3687 1.1545 14 6 0.7965 -7.5817 0.9036 15 6 -0.0524 -8.8174 0.7506 16 8 -0.5290 -9.0959 -0.3294 17 7 -0.2822 -9.6130 1.8139 18 6 0.1929 -9.2315 3.1509 19 6 -0.9971 -9.2708 4.1218 20 6 -1.6539 -10.6517 4.0590 21 6 -2.1788 -10.9048 2.6439 22 6 -1.0072 -10.8813 1.6571 23 6 1.6026 -7.3529 -0.3780 24 6 2.4173 -6.0648 -0.2393 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5566 -0.8903 27 1 0.6249 -2.5570 0.8897 28 1 2.8721 -3.6042 0.8895 29 1 2.8721 -3.6042 -0.8906 30 1 1.4584 -5.2090 2.0804 31 1 0.1216 -4.2417 1.4134 32 1 -0.8108 -6.2640 0.3318 33 1 -0.6490 -6.5072 2.0881 34 1 1.4781 -7.7099 1.7445 35 1 0.9599 -9.9326 3.4800 36 1 0.6062 -8.2235 3.1179 37 1 -1.7242 -8.5089 3.8410 38 1 -0.6447 -9.0814 5.1358 39 1 -2.4823 -10.6922 4.7663 40 1 -0.9196 -11.4152 4.3158 41 1 -2.8948 -10.1275 2.3770 42 1 -2.6671 -11.8785 2.6057 43 1 -1.3859 -10.9621 0.6382 44 1 -0.3361 -11.7142 1.8669 45 1 0.9221 -7.2636 -1.2248 46 1 2.2765 -8.1942 -0.5399 47 1 2.9815 -5.8914 -1.1557 48 1 3.1072 -6.1602 0.5993 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053095809.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:52 Heat of formation + Delta-G solvation = -74.343766 kcal Electronic energy + Delta-G solvation = -24454.986856 eV Core-core repulsion = 21121.702812 eV Total energy + Delta-G solvation = -3333.284043 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.59942 -39.66368 -38.28881 -35.89105 -34.54695 -33.70300 -32.17272 -31.81648 -30.99640 -27.55041 -26.24175 -25.02564 -24.19300 -23.98254 -22.30102 -21.66148 -20.84320 -19.69716 -18.57348 -18.33332 -17.18739 -16.56499 -16.36666 -16.26455 -15.98435 -15.43843 -15.29599 -15.26902 -14.85816 -14.61260 -14.41060 -14.38664 -14.14185 -14.07873 -13.72081 -13.30853 -13.13534 -13.03182 -12.83632 -12.56773 -12.35849 -12.22044 -12.16091 -11.95267 -11.86495 -11.71219 -11.59233 -11.49831 -11.44564 -11.21694 -11.16871 -10.61170 -10.50023 -9.64930 -9.11355 -8.18248 -6.29737 1.40979 1.44452 1.52237 1.53795 1.98157 2.41481 3.07391 3.14999 3.42137 3.72555 3.78077 3.83627 3.99410 4.00632 4.10778 4.19283 4.19548 4.36278 4.36662 4.45284 4.51172 4.54900 4.57813 4.61618 4.70624 4.74389 4.82788 4.85870 4.91362 4.93498 4.98021 5.02423 5.08537 5.12263 5.15007 5.16935 5.23798 5.34383 5.45174 5.48283 5.59286 5.69561 5.81131 6.13759 6.35332 6.36377 6.38449 6.87864 7.13831 7.39348 8.93694 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.028031 B = 0.002873 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.637614 B = 9744.513462 C =10192.053493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.036 3.964 10 C 0.081 3.919 11 N -0.559 5.559 12 C 0.061 3.939 13 C -0.092 4.092 14 C -0.098 4.098 15 C 0.520 3.480 16 O -0.585 6.585 17 N -0.611 5.611 18 C 0.097 3.903 19 C -0.136 4.136 20 C -0.117 4.117 21 C -0.131 4.131 22 C 0.105 3.895 23 C -0.092 4.092 24 C 0.060 3.940 25 H 0.263 0.737 26 H -0.014 1.014 27 H -0.003 1.003 28 H 0.027 0.973 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.054 0.946 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.379 -24.329 11.453 26.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.002 4.002 10 C -0.046 4.046 11 N -0.284 5.284 12 C -0.067 4.067 13 C -0.130 4.130 14 C -0.120 4.120 15 C 0.309 3.691 16 O -0.465 6.465 17 N -0.343 5.343 18 C -0.025 4.025 19 C -0.174 4.174 20 C -0.154 4.154 21 C -0.169 4.169 22 C -0.017 4.017 23 C -0.131 4.131 24 C -0.068 4.068 25 H 0.072 0.928 26 H 0.005 0.995 27 H 0.015 0.985 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.073 0.927 46 H 0.101 0.899 47 H 0.095 0.905 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.648 -24.378 10.516 26.557 hybrid contribution 0.381 1.154 0.212 1.233 sum 1.028 -23.224 10.729 25.603 Atomic orbital electron populations 1.70114 1.07875 1.27793 1.51488 1.25977 0.95732 1.03366 0.94686 0.85486 0.78234 0.77994 0.79230 1.19253 1.20956 1.18921 1.21613 0.93568 0.92256 1.50827 0.92030 1.18928 0.94250 0.92050 0.94935 1.21939 0.95280 0.88137 0.99247 1.61882 1.28376 1.02419 1.35759 1.22012 0.96773 0.97619 0.90283 1.21415 0.97212 0.92117 1.02242 1.21396 0.97450 0.91851 1.01265 1.20923 0.80225 0.84540 0.83369 1.90659 1.52922 1.74329 1.28556 1.48280 1.56067 1.21411 1.08574 1.22187 0.97321 1.02605 0.80385 1.22014 0.97283 0.97932 1.00140 1.21517 1.01022 0.97096 0.95775 1.21890 0.96850 1.02687 0.95505 1.21689 0.94425 0.85183 1.00389 1.21390 0.98355 0.96872 0.96444 1.22092 0.93692 0.89673 1.01340 0.92813 0.99526 0.98492 0.95525 0.91978 0.93488 0.92284 0.93265 0.89421 0.86497 0.89051 0.88804 0.92791 0.88547 0.90843 0.90342 0.93402 0.89251 0.91558 0.89666 0.92744 0.89859 0.90527 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.76 13.29 21.44 0.28 -57.48 16 2 C 0.00 0.01 5.46 84.65 0.46 0.48 16 3 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.54 -31.32 9.11 25.60 0.23 -31.09 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.04 1.94 4.90 29.85 0.15 2.09 16 10 C 0.08 3.46 4.90 86.30 0.42 3.88 16 11 N -0.56 -20.56 4.66 -896.35 -4.17 -24.74 16 12 C 0.06 2.01 5.29 86.32 0.46 2.46 16 13 C -0.09 -2.54 5.29 30.64 0.16 -2.38 16 14 C -0.10 -2.34 1.79 -11.46 -0.02 -2.36 16 15 C 0.52 13.59 6.70 87.66 0.59 14.18 16 16 O -0.58 -20.50 15.64 -3.05 -0.05 -20.55 16 17 N -0.61 -11.59 2.97 -818.03 -2.43 -14.01 16 18 C 0.10 1.16 6.18 86.51 0.53 1.70 16 19 C -0.14 -1.42 6.10 30.82 0.19 -1.24 16 20 C -0.12 -1.10 5.88 30.62 0.18 -0.92 16 21 C -0.13 -1.72 6.08 30.67 0.19 -1.53 16 22 C 0.11 1.78 6.44 86.36 0.56 2.33 16 23 C -0.09 -2.47 5.08 30.65 0.16 -2.31 16 24 C 0.06 1.70 5.46 86.33 0.47 2.17 16 25 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 26 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 27 H 0.00 -0.18 6.43 -2.39 -0.02 -0.20 16 28 H 0.03 1.09 8.12 -2.39 -0.02 1.07 16 29 H 0.06 2.60 7.99 -2.39 -0.02 2.58 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 2.32 6.21 -2.39 -0.01 2.30 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.09 2.00 8.02 -2.38 -0.02 1.98 16 34 H 0.12 2.06 6.18 -2.39 -0.01 2.04 16 35 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 1.09 5.44 -2.39 -0.01 1.07 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.07 1.48 7.00 -2.38 -0.02 1.46 16 44 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.05 1.80 7.78 -2.39 -0.02 1.78 16 46 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.08 2.16 8.01 -2.39 -0.02 2.14 16 48 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -73.00 365.14 1.29 -71.71 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.91 Total: 11.06 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 4.72 Total: -12.53 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -6.32 Total: -96.23 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.05 Total: -20.55 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -73.00 1.29 -71.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053095809.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.635 kcal (2) G-P(sol) polarization free energy of solvation -73.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds