Wall clock time and date at job start Tue Mar 31 2020 02:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99729 * 2 1 4 4 C 1.50697 * 119.99922 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.46686 * 95.00660 * 4 2 1 6 6 H 1.08997 * 109.47301 * 54.99801 * 5 4 2 7 7 C 1.53000 * 109.47096 * 294.99705 * 5 4 2 8 8 C 1.50702 * 109.47200 * 175.00228 * 5 4 2 9 9 O 1.21286 * 119.99555 * 22.15419 * 8 5 4 10 10 N 1.34768 * 120.00345 * 202.16470 * 8 5 4 11 11 C 1.46968 * 120.59344 * 4.65361 * 10 8 5 12 12 C 1.53818 * 108.39505 * 124.76226 * 11 10 8 13 13 H 1.09005 * 109.67072 * 169.39274 * 12 11 10 14 14 C 1.53004 * 109.73880 * 289.84765 * 12 11 10 15 15 N 1.46955 * 108.57969 * 49.64167 * 12 11 10 16 16 C 1.36941 * 120.59761 * 124.62619 * 15 12 11 17 17 H 1.07999 * 120.00133 * 208.25840 * 16 15 12 18 18 C 1.38815 * 119.99645 * 28.25449 * 16 15 12 19 19 N 1.31621 * 119.99969 * 17.60876 * 18 16 15 20 20 Si 1.86796 * 119.99687 * 197.61256 * 18 16 15 21 21 H 1.48491 * 109.47652 * 60.00075 * 20 18 16 22 22 H 1.48505 * 109.46795 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46975 * 299.99586 * 20 18 16 24 24 C 1.46968 * 118.81161 * 304.64482 * 15 12 11 25 25 H 1.09002 * 109.60855 * 295.48193 * 24 15 12 26 26 C 1.53005 * 109.60965 * 174.97604 * 24 15 12 27 27 C 1.46970 * 120.59634 * 184.94095 * 10 8 5 28 28 H 1.07997 * 120.00116 * 179.97438 * 1 2 3 29 29 H 1.08007 * 120.00208 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 269.99222 * 3 2 1 31 31 H 1.09005 * 109.46957 * 149.99833 * 3 2 1 32 32 H 1.08998 * 109.47782 * 29.99314 * 3 2 1 33 33 H 1.08997 * 109.47252 * 215.00060 * 4 2 1 34 34 H 1.09000 * 109.47287 * 335.00614 * 4 2 1 35 35 H 1.09002 * 109.47170 * 305.96348 * 7 5 4 36 36 H 1.09002 * 109.47195 * 65.96418 * 7 5 4 37 37 H 1.09002 * 109.47398 * 185.96619 * 7 5 4 38 38 H 1.08994 * 109.61574 * 244.54244 * 11 10 8 39 39 H 1.09005 * 109.61017 * 5.06077 * 11 10 8 40 40 H 1.09004 * 109.46589 * 179.15897 * 14 12 11 41 41 H 1.08995 * 109.47503 * 299.15893 * 14 12 11 42 42 H 1.08992 * 109.46936 * 59.16365 * 14 12 11 43 43 H 0.97004 * 119.99405 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.46609 * 300.85429 * 26 24 15 45 45 H 1.08997 * 109.47211 * 60.85031 * 26 24 15 46 46 H 1.08998 * 109.46811 * 180.85661 * 26 24 15 47 47 H 1.08997 * 109.60598 * 354.94126 * 27 10 8 48 48 H 1.08995 * 109.60979 * 115.45987 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6844 -1.4363 6 1 2.9771 -0.8654 -1.9002 7 6 1.1488 -1.9555 -2.2316 8 6 3.2853 -2.9233 -1.4269 9 8 3.2558 -3.6741 -0.4747 10 7 4.0854 -3.1970 -2.4762 11 6 4.2089 -2.2468 -3.5905 12 6 5.6981 -1.9115 -3.7798 13 1 5.8349 -1.3613 -4.7108 14 6 6.1902 -1.0635 -2.6052 15 7 6.4579 -3.1683 -3.8333 16 6 7.2702 -3.4468 -4.9000 17 1 7.4574 -4.4722 -5.1829 18 6 7.8528 -2.4113 -5.6177 19 7 7.9214 -1.2053 -5.0949 20 14 8.5394 -2.7293 -7.3256 21 1 7.4526 -3.2142 -8.2137 22 1 9.1033 -1.4700 -7.8747 23 1 9.6088 -3.7565 -7.2458 24 6 6.3300 -4.1211 -2.7217 25 1 6.7257 -3.6743 -1.8096 26 6 7.1046 -5.3993 -3.0493 27 6 4.8452 -4.4539 -2.5298 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9354 -0.0004 30 1 2.2452 1.6197 -1.0277 31 1 3.0159 1.1748 0.5139 32 1 1.4744 2.0649 0.5137 33 1 2.9741 -1.1986 0.5900 34 1 1.4385 -2.0853 0.4351 35 1 0.5478 -2.7006 -1.7103 36 1 0.5785 -1.0317 -2.3287 37 1 1.4093 -2.3276 -3.2225 38 1 3.8141 -2.6973 -4.5011 39 1 3.6542 -1.3374 -3.3590 40 1 7.2493 -0.8411 -2.7362 41 1 5.6253 -0.1321 -2.5676 42 1 6.0468 -1.6132 -1.6750 43 1 8.3282 -0.4816 -5.5966 44 1 6.7105 -5.8380 -3.9659 45 1 8.1593 -5.1602 -3.1853 46 1 6.9957 -6.1101 -2.2302 47 1 4.7108 -5.0026 -1.5976 48 1 4.4947 -5.0579 -3.3666 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585126562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:01 Heat of formation + Delta-G solvation = -2.685786 kcal Electronic energy + Delta-G solvation = -25712.682951 eV Core-core repulsion = 22382.506231 eV Total energy + Delta-G solvation = -3330.176720 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.00895 -37.65855 -36.51151 -34.09280 -33.07059 -32.25940 -31.12435 -27.96531 -27.36627 -27.05481 -26.44182 -25.59259 -23.88775 -22.40434 -20.98821 -19.35825 -18.51833 -18.20959 -16.96045 -15.87963 -15.57739 -15.25204 -14.98774 -14.62164 -14.30479 -14.03953 -13.87613 -13.56289 -13.28720 -13.20350 -13.00408 -12.82302 -12.18607 -12.03678 -11.98265 -11.77002 -11.71007 -11.46384 -11.26317 -11.18203 -11.11664 -10.90609 -10.80861 -10.71911 -10.62942 -10.55492 -10.15900 -10.10113 -9.78400 -9.56449 -9.17946 -9.02960 -8.52320 -8.13051 -6.66417 -5.83765 -3.26717 2.15547 3.04864 3.34642 3.40943 3.41890 3.51667 4.43973 4.66332 4.82745 4.97381 5.07925 5.14083 5.20366 5.32952 5.42841 5.46303 5.60404 5.72318 5.74606 5.80076 5.81358 5.85163 5.89310 5.91571 5.96645 6.07524 6.10522 6.16625 6.21080 6.24958 6.27010 6.38565 6.44770 6.58835 6.60066 6.74929 6.83835 6.84964 6.92013 7.02346 7.12599 7.50972 7.61762 7.77918 7.98646 8.38721 8.62664 9.15757 9.77901 10.34992 11.23396 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.021026 B = 0.004561 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.363102 B = 6137.182190 C = 6822.380121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.122 4.122 4 C -0.067 4.067 5 C -0.105 4.105 6 H 0.095 0.905 7 C -0.139 4.139 8 C 0.515 3.485 9 O -0.561 6.561 10 N -0.593 5.593 11 C 0.084 3.916 12 C 0.178 3.822 13 H 0.108 0.892 14 C -0.142 4.142 15 N -0.581 5.581 16 C -0.252 4.252 17 H 0.071 0.929 18 C 0.004 3.996 19 N -0.899 5.899 20 Si 0.900 3.100 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.155 3.845 25 H 0.031 0.969 26 C -0.135 4.135 27 C 0.100 3.900 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.027 0.973 42 H 0.024 0.976 43 H 0.254 0.746 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.041 0.959 47 H 0.079 0.921 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.665 2.241 5.736 13.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.116 4.116 3 C -0.179 4.179 4 C -0.104 4.104 5 C -0.126 4.126 6 H 0.113 0.887 7 C -0.197 4.197 8 C 0.303 3.697 9 O -0.441 6.441 10 N -0.323 5.323 11 C -0.040 4.040 12 C 0.070 3.930 13 H 0.125 0.875 14 C -0.201 4.201 15 N -0.303 5.303 16 C -0.381 4.381 17 H 0.089 0.911 18 C -0.194 4.194 19 N -0.543 5.543 20 Si 0.730 3.270 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.210 1.210 24 C 0.048 3.952 25 H 0.048 0.952 26 C -0.193 4.193 27 C -0.024 4.024 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.046 0.954 42 H 0.043 0.957 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.060 0.940 47 H 0.098 0.902 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.563 1.980 6.133 13.237 hybrid contribution 0.450 0.033 -1.011 1.107 sum -11.113 2.013 5.123 12.401 Atomic orbital electron populations 1.23657 0.95185 1.01586 1.03382 1.21780 0.95424 0.95695 0.98746 1.20900 1.00251 0.94400 1.02339 1.20520 1.00560 0.94208 0.95161 1.21226 0.96956 0.96751 0.97694 0.88651 1.21753 0.95883 1.02325 0.99713 1.20517 0.79962 0.87137 0.82078 1.90621 1.68030 1.51239 1.34228 1.48003 1.43378 1.20553 1.20400 1.22809 1.01527 0.91499 0.88212 1.20824 0.84943 0.87566 0.99628 0.87487 1.22013 1.03294 0.97093 0.97667 1.44142 1.50113 1.17302 1.18779 1.19159 1.22008 0.92675 1.04285 0.91106 1.25018 0.98410 0.96509 0.99476 1.69993 1.47096 1.01113 1.36087 0.86414 0.78807 0.76918 0.84868 1.21138 1.21729 1.21000 1.20782 0.91234 0.91275 0.91927 0.95156 1.21752 1.01359 0.96079 1.00070 1.22240 0.93632 0.85130 1.01418 0.88548 0.88734 0.91236 0.91697 0.92036 0.90949 0.90489 0.92311 0.91365 0.92144 0.92005 0.90853 0.90494 0.95437 0.95725 0.93633 0.92572 0.91701 0.94048 0.90245 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.96 12.66 29.01 0.37 -1.59 16 2 C -0.12 -1.26 4.80 -101.07 -0.48 -1.75 16 3 C -0.12 -1.19 10.03 36.01 0.36 -0.83 16 4 C -0.07 -0.87 4.27 -27.88 -0.12 -0.99 16 5 C -0.11 -1.45 1.88 -91.77 -0.17 -1.62 16 6 H 0.10 1.29 6.23 -51.93 -0.32 0.96 16 7 C -0.14 -1.65 8.58 37.16 0.32 -1.33 16 8 C 0.52 9.03 6.83 -10.99 -0.08 8.95 16 9 O -0.56 -11.41 15.57 5.55 0.09 -11.33 16 10 N -0.59 -10.70 2.58 -172.21 -0.44 -11.15 16 11 C 0.08 1.48 5.54 -3.36 -0.02 1.46 16 12 C 0.18 3.82 2.35 -67.25 -0.16 3.66 16 13 H 0.11 2.60 5.99 -51.93 -0.31 2.28 16 14 C -0.14 -2.98 8.96 37.16 0.33 -2.65 16 15 N -0.58 -13.40 2.69 -156.76 -0.42 -13.82 16 16 C -0.25 -6.35 8.61 -15.06 -0.13 -6.48 16 17 H 0.07 1.76 6.19 -52.49 -0.32 1.44 16 18 C 0.00 0.12 4.90 -17.43 -0.09 0.03 16 19 N -0.90 -23.96 10.17 55.49 0.56 -23.40 16 20 Si 0.90 20.62 29.59 -169.99 -5.03 15.59 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.16 3.19 3.23 -67.48 -0.22 2.97 16 25 H 0.03 0.69 7.40 -51.93 -0.38 0.30 16 26 C -0.13 -2.49 7.94 37.16 0.29 -2.20 16 27 C 0.10 1.87 5.91 -3.60 -0.02 1.85 16 28 H 0.10 0.92 7.99 -52.49 -0.42 0.50 16 29 H 0.09 0.80 8.04 -52.48 -0.42 0.38 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 32 H 0.06 0.52 8.06 -51.93 -0.42 0.10 16 33 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 34 H 0.08 1.05 7.89 -51.93 -0.41 0.64 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.70 6.90 -51.93 -0.36 0.34 16 37 H 0.06 0.73 7.81 -51.93 -0.41 0.32 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.07 1.12 5.38 -51.93 -0.28 0.84 16 40 H 0.08 1.86 7.22 -51.93 -0.37 1.49 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.51 7.02 -51.93 -0.36 0.15 16 43 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 44 H 0.06 1.03 7.33 -51.93 -0.38 0.65 16 45 H 0.06 1.29 7.71 -51.93 -0.40 0.89 16 46 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.08 1.49 6.99 -51.93 -0.36 1.13 16 48 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -27.98 365.85 -7.99 -35.97 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -8.45 Total: 3.11 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 0.19 Total: -0.49 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.30 Total: -48.37 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.98 -7.99 -35.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585126562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.284 kcal (2) G-P(sol) polarization free energy of solvation -27.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds