Wall clock time and date at job start Tue Mar 31 2020 02:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99729 * 2 1 4 4 C 1.50697 * 119.99922 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.46686 * 95.00660 * 4 2 1 6 6 H 1.08997 * 109.47301 * 54.99801 * 5 4 2 7 7 C 1.53000 * 109.47096 * 294.99705 * 5 4 2 8 8 C 1.50702 * 109.47200 * 175.00228 * 5 4 2 9 9 O 1.21286 * 119.99555 * 22.15419 * 8 5 4 10 10 N 1.34768 * 120.00345 * 202.16470 * 8 5 4 11 11 C 1.46968 * 120.59344 * 4.65361 * 10 8 5 12 12 C 1.53818 * 108.39505 * 124.76226 * 11 10 8 13 13 H 1.09005 * 109.67072 * 169.39274 * 12 11 10 14 14 C 1.53004 * 109.73880 * 289.84765 * 12 11 10 15 15 N 1.46955 * 108.57969 * 49.64167 * 12 11 10 16 16 C 1.36941 * 120.59761 * 124.62619 * 15 12 11 17 17 H 1.07999 * 120.00133 * 208.25840 * 16 15 12 18 18 C 1.38815 * 119.99645 * 28.25449 * 16 15 12 19 19 N 1.31621 * 119.99969 * 17.60876 * 18 16 15 20 20 Si 1.86796 * 119.99687 * 197.61256 * 18 16 15 21 21 H 1.48491 * 109.47652 * 60.00075 * 20 18 16 22 22 H 1.48505 * 109.46795 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46975 * 299.99586 * 20 18 16 24 24 C 1.46968 * 118.81161 * 304.64482 * 15 12 11 25 25 H 1.09002 * 109.60855 * 295.48193 * 24 15 12 26 26 C 1.53005 * 109.60965 * 174.97604 * 24 15 12 27 27 C 1.46970 * 120.59634 * 184.94095 * 10 8 5 28 28 H 1.07997 * 120.00116 * 179.97438 * 1 2 3 29 29 H 1.08007 * 120.00208 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 269.99222 * 3 2 1 31 31 H 1.09005 * 109.46957 * 149.99833 * 3 2 1 32 32 H 1.08998 * 109.47782 * 29.99314 * 3 2 1 33 33 H 1.08997 * 109.47252 * 215.00060 * 4 2 1 34 34 H 1.09000 * 109.47287 * 335.00614 * 4 2 1 35 35 H 1.09002 * 109.47170 * 305.96348 * 7 5 4 36 36 H 1.09002 * 109.47195 * 65.96418 * 7 5 4 37 37 H 1.09002 * 109.47398 * 185.96619 * 7 5 4 38 38 H 1.08994 * 109.61574 * 244.54244 * 11 10 8 39 39 H 1.09005 * 109.61017 * 5.06077 * 11 10 8 40 40 H 1.09004 * 109.46589 * 179.15897 * 14 12 11 41 41 H 1.08995 * 109.47503 * 299.15893 * 14 12 11 42 42 H 1.08992 * 109.46936 * 59.16365 * 14 12 11 43 43 H 0.97004 * 119.99405 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.46609 * 300.85429 * 26 24 15 45 45 H 1.08997 * 109.47211 * 60.85031 * 26 24 15 46 46 H 1.08998 * 109.46811 * 180.85661 * 26 24 15 47 47 H 1.08997 * 109.60598 * 354.94126 * 27 10 8 48 48 H 1.08995 * 109.60979 * 115.45987 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6844 -1.4363 6 1 2.9771 -0.8654 -1.9002 7 6 1.1488 -1.9555 -2.2316 8 6 3.2853 -2.9233 -1.4269 9 8 3.2558 -3.6741 -0.4747 10 7 4.0854 -3.1970 -2.4762 11 6 4.2089 -2.2468 -3.5905 12 6 5.6981 -1.9115 -3.7798 13 1 5.8349 -1.3613 -4.7108 14 6 6.1902 -1.0635 -2.6052 15 7 6.4579 -3.1683 -3.8333 16 6 7.2702 -3.4468 -4.9000 17 1 7.4574 -4.4722 -5.1829 18 6 7.8528 -2.4113 -5.6177 19 7 7.9214 -1.2053 -5.0949 20 14 8.5394 -2.7293 -7.3256 21 1 7.4526 -3.2142 -8.2137 22 1 9.1033 -1.4700 -7.8747 23 1 9.6088 -3.7565 -7.2458 24 6 6.3300 -4.1211 -2.7217 25 1 6.7257 -3.6743 -1.8096 26 6 7.1046 -5.3993 -3.0493 27 6 4.8452 -4.4539 -2.5298 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9354 -0.0004 30 1 2.2452 1.6197 -1.0277 31 1 3.0159 1.1748 0.5139 32 1 1.4744 2.0649 0.5137 33 1 2.9741 -1.1986 0.5900 34 1 1.4385 -2.0853 0.4351 35 1 0.5478 -2.7006 -1.7103 36 1 0.5785 -1.0317 -2.3287 37 1 1.4093 -2.3276 -3.2225 38 1 3.8141 -2.6973 -4.5011 39 1 3.6542 -1.3374 -3.3590 40 1 7.2493 -0.8411 -2.7362 41 1 5.6253 -0.1321 -2.5676 42 1 6.0468 -1.6132 -1.6750 43 1 8.3282 -0.4816 -5.5966 44 1 6.7105 -5.8380 -3.9659 45 1 8.1593 -5.1602 -3.1853 46 1 6.9957 -6.1101 -2.2302 47 1 4.7108 -5.0026 -1.5976 48 1 4.4947 -5.0579 -3.3666 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585126562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:00 Heat of formation + Delta-G solvation = -16.207469 kcal Electronic energy + Delta-G solvation = -25713.269295 eV Core-core repulsion = 22382.506231 eV Total energy + Delta-G solvation = -3330.763064 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.42748 -39.15662 -37.61010 -35.70467 -34.60133 -33.44339 -32.92562 -29.74770 -28.23338 -28.02586 -27.80348 -27.14884 -25.64852 -23.68053 -22.64082 -20.96036 -19.82127 -19.33509 -18.32327 -17.55110 -17.12763 -16.73451 -16.43573 -15.80820 -15.72028 -15.38065 -15.34896 -15.05862 -14.64577 -14.42557 -14.25649 -13.87371 -13.66651 -13.50194 -13.24094 -13.06884 -12.95210 -12.88775 -12.78323 -12.51220 -12.47199 -12.36952 -12.30311 -12.21199 -12.00821 -11.84268 -11.77596 -11.75470 -11.50671 -11.30383 -10.62160 -10.40473 -9.84990 -9.69713 -8.51222 -7.78068 -5.22943 1.34775 1.51596 1.54059 1.59210 1.67194 2.11719 2.56885 3.35427 3.49332 3.52737 3.86162 3.99413 4.09533 4.14299 4.21123 4.26507 4.35462 4.42547 4.48952 4.60977 4.66391 4.69168 4.71241 4.81300 4.82995 4.84709 4.88275 4.91602 4.92878 4.95233 5.08512 5.11439 5.17577 5.18334 5.21463 5.28210 5.33900 5.40041 5.52982 5.73834 5.78808 5.80396 5.88117 6.04332 6.47310 6.54754 7.20940 7.24092 7.91375 8.44922 9.26183 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.021026 B = 0.004561 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.363102 B = 6137.182190 C = 6822.380121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.131 4.131 3 C -0.122 4.122 4 C -0.062 4.062 5 C -0.099 4.099 6 H 0.102 0.898 7 C -0.133 4.133 8 C 0.512 3.488 9 O -0.592 6.592 10 N -0.596 5.596 11 C 0.097 3.903 12 C 0.174 3.826 13 H 0.081 0.919 14 C -0.125 4.125 15 N -0.594 5.594 16 C -0.255 4.255 17 H 0.072 0.928 18 C -0.041 4.041 19 N -0.921 5.921 20 Si 0.956 3.044 21 H -0.280 1.280 22 H -0.298 1.298 23 H -0.284 1.284 24 C 0.152 3.848 25 H 0.007 0.993 26 C -0.126 4.126 27 C 0.108 3.892 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.103 0.897 40 H 0.039 0.961 41 H 0.051 0.949 42 H 0.018 0.982 43 H 0.247 0.753 44 H 0.058 0.942 45 H 0.045 0.955 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.714 2.539 5.454 14.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.131 4.131 3 C -0.178 4.178 4 C -0.099 4.099 5 C -0.120 4.120 6 H 0.120 0.880 7 C -0.191 4.191 8 C 0.302 3.698 9 O -0.473 6.473 10 N -0.327 5.327 11 C -0.026 4.026 12 C 0.067 3.933 13 H 0.099 0.901 14 C -0.184 4.184 15 N -0.317 5.317 16 C -0.385 4.385 17 H 0.090 0.910 18 C -0.237 4.237 19 N -0.567 5.567 20 Si 0.786 3.214 21 H -0.207 1.207 22 H -0.225 1.225 23 H -0.210 1.210 24 C 0.046 3.954 25 H 0.024 0.976 26 C -0.184 4.184 27 C -0.016 4.016 28 H 0.117 0.883 29 H 0.131 0.869 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.037 0.963 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.628 2.268 5.855 15.005 hybrid contribution 1.085 -0.092 -0.836 1.373 sum -12.543 2.176 5.019 13.684 Atomic orbital electron populations 1.23836 0.94737 1.02588 1.01136 1.21685 0.95779 0.94932 1.00718 1.20907 1.00004 0.94219 1.02694 1.20431 0.99938 0.95346 0.94234 1.21261 0.97216 0.94700 0.98806 0.88013 1.21741 0.94821 1.03371 0.99140 1.21218 0.79677 0.87859 0.81052 1.90605 1.68951 1.52584 1.35192 1.48076 1.43500 1.20339 1.20772 1.22626 0.98870 0.92692 0.88440 1.20801 0.87278 0.86896 0.98323 0.90130 1.21811 1.01248 0.98136 0.97233 1.44371 1.50159 1.18138 1.19029 1.19413 1.21684 0.92735 1.04695 0.91008 1.25608 0.99366 0.96559 1.02140 1.70143 1.48202 1.01541 1.36785 0.85521 0.78118 0.76182 0.81581 1.20672 1.22478 1.20991 1.20864 0.92882 0.91487 0.90202 0.97554 1.21662 0.99712 0.95703 1.01298 1.22057 0.92237 0.85737 1.01610 0.88329 0.86929 0.90857 0.92556 0.90583 0.92691 0.91437 0.92463 0.89273 0.92109 0.91534 0.87951 0.94166 0.92971 0.96325 0.94347 0.92329 0.93584 0.91233 0.90307 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.04 12.66 67.78 0.86 -2.18 16 2 C -0.13 -2.54 4.80 -16.49 -0.08 -2.62 16 3 C -0.12 -2.09 10.03 71.24 0.71 -1.38 16 4 C -0.06 -1.52 4.27 29.85 0.13 -1.39 16 5 C -0.10 -2.53 1.88 -11.54 -0.02 -2.55 16 6 H 0.10 2.48 6.23 -2.39 -0.01 2.47 16 7 C -0.13 -2.77 8.58 71.98 0.62 -2.16 16 8 C 0.51 17.36 6.83 87.66 0.60 17.96 16 9 O -0.59 -23.77 15.57 -3.05 -0.05 -23.82 16 10 N -0.60 -20.84 2.58 -817.14 -2.11 -22.95 16 11 C 0.10 3.30 5.54 86.57 0.48 3.78 16 12 C 0.17 7.46 2.35 45.18 0.11 7.57 16 13 H 0.08 3.94 5.99 -2.38 -0.01 3.92 16 14 C -0.13 -5.30 8.96 71.98 0.64 -4.66 16 15 N -0.59 -27.54 2.69 -649.86 -1.75 -29.28 16 16 C -0.26 -12.93 8.61 84.03 0.72 -12.20 16 17 H 0.07 3.56 6.19 -2.91 -0.02 3.54 16 18 C -0.04 -2.11 4.90 84.86 0.42 -1.69 16 19 N -0.92 -50.05 10.17 21.65 0.22 -49.83 16 20 Si 0.96 42.66 29.59 68.60 2.03 44.69 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 24 C 0.15 6.28 3.23 45.03 0.15 6.43 16 25 H 0.01 0.31 7.40 -2.39 -0.02 0.29 16 26 C -0.13 -4.59 7.94 71.98 0.57 -4.02 16 27 C 0.11 3.95 5.91 86.41 0.51 4.46 16 28 H 0.10 1.57 7.99 -2.91 -0.02 1.55 16 29 H 0.11 1.46 8.04 -2.91 -0.02 1.44 16 30 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.06 1.05 8.08 -2.38 -0.02 1.03 16 32 H 0.08 1.07 8.06 -2.39 -0.02 1.05 16 33 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 34 H 0.07 1.77 7.89 -2.39 -0.02 1.75 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.50 6.90 -2.39 -0.02 1.49 16 37 H 0.06 1.28 7.81 -2.39 -0.02 1.26 16 38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.10 2.86 5.38 -2.38 -0.01 2.85 16 40 H 0.04 1.98 7.22 -2.39 -0.02 1.97 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.02 0.77 7.02 -2.39 -0.02 0.75 16 43 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 44 H 0.06 2.09 7.33 -2.39 -0.02 2.07 16 45 H 0.05 1.83 7.71 -2.39 -0.02 1.81 16 46 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.08 2.90 6.99 -2.39 -0.02 2.89 16 48 H 0.07 2.41 8.12 -2.39 -0.02 2.39 16 Total: -1.00 -60.63 365.85 5.67 -54.96 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.91 Total: 20.88 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 6.41 Total: 5.34 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -3.64 Total: -102.06 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.05 Total: -23.82 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -60.63 5.67 -54.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585126562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.756 kcal (2) G-P(sol) polarization free energy of solvation -60.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds