Wall clock time and date at job start Tue Mar 31 2020 02:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38119 * 125.45479 * 2 1 4 4 C 1.43202 * 126.69605 * 0.02562 * 3 2 1 5 5 N 3.56955 * 90.22476 * 0.02562 * 2 1 3 6 6 C 1.46588 * 106.60867 * 180.02562 * 3 2 1 7 7 N 1.38362 * 126.95825 * 179.97438 * 6 3 2 8 8 C 1.39074 * 106.08129 * 359.97438 * 6 3 2 9 9 C 1.41210 * 125.96128 * 179.97438 * 8 6 3 10 10 O 1.21850 * 119.99909 * 274.56747 * 9 8 6 11 11 C 1.47991 * 119.99685 * 94.56547 * 9 8 6 12 12 C 1.39549 * 120.13654 * 174.89853 * 11 9 8 13 13 C 1.37966 * 119.85409 * 179.97438 * 12 11 9 14 14 C 1.38363 * 120.13990 * 0.02562 * 13 12 11 15 15 C 1.38365 * 120.28812 * 0.25954 * 14 13 12 16 16 C 1.37957 * 120.13776 * 359.44555 * 15 14 13 17 17 N 1.35444 * 125.44832 * 180.28799 * 2 1 3 18 18 C 1.36973 * 124.93420 * 0.03085 * 17 2 1 19 19 H 1.08001 * 119.99638 * 223.00789 * 18 17 2 20 20 C 1.39092 * 119.99734 * 43.01121 * 18 17 2 21 21 N 1.31252 * 120.00229 * 18.76395 * 20 18 17 22 22 Si 1.86800 * 119.99513 * 198.76440 * 20 18 17 23 23 H 1.48497 * 109.47291 * 60.00052 * 22 20 18 24 24 H 1.48499 * 109.47319 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47376 * 299.99908 * 22 20 18 26 26 H 1.09001 * 109.46996 * 85.82103 * 1 2 3 27 27 H 1.09002 * 109.47165 * 205.82567 * 1 2 3 28 28 H 1.09000 * 109.46817 * 325.82216 * 1 2 3 29 29 H 0.97001 * 119.99737 * 185.14555 * 7 6 3 30 30 H 0.97003 * 120.00039 * 5.14719 * 7 6 3 31 31 H 1.07999 * 120.07576 * 359.95253 * 12 11 9 32 32 H 1.07996 * 119.93074 * 180.02562 * 13 12 11 33 33 H 1.08002 * 119.85621 * 179.97438 * 14 13 12 34 34 H 1.07995 * 119.92550 * 179.72263 * 15 14 13 35 35 H 1.08003 * 120.07175 * 180.25226 * 16 15 14 36 36 H 0.97008 * 119.99541 * 184.92039 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3082 1.1251 0.0000 4 6 1.8693 2.4882 0.0005 5 7 1.5210 3.5695 0.0016 6 6 3.6955 0.6516 -0.0006 7 7 4.8399 1.4292 -0.0013 8 6 3.6284 -0.7376 -0.0004 9 6 4.7300 -1.6210 -0.0013 10 8 5.2569 -1.9367 -1.0537 11 6 5.2447 -2.1632 1.2759 12 6 6.2629 -3.1175 1.2723 13 6 6.7386 -3.6187 2.4664 14 6 6.2080 -3.1776 3.6657 15 6 5.1942 -2.2360 3.6759 16 6 4.7139 -1.7224 2.4889 17 7 2.2926 -1.1034 -0.0055 18 6 1.8327 -2.3936 -0.0126 19 1 2.2954 -3.1352 0.6216 20 6 0.7699 -2.7485 -0.8367 21 7 0.4459 -1.9862 -1.8549 22 14 -0.1964 -4.3100 -0.4942 23 1 -0.8028 -4.2302 0.8590 24 1 -1.2701 -4.4605 -1.5090 25 1 0.7150 -5.4806 -0.5600 26 1 -0.3633 0.0749 -1.0249 27 1 -0.3633 -0.9250 0.4477 28 1 -0.3633 0.8502 0.5773 29 1 5.7112 1.0097 -0.0771 30 1 4.7709 2.3938 0.0739 31 1 6.6774 -3.4632 0.3368 32 1 7.5269 -4.3569 2.4651 33 1 6.5836 -3.5733 4.5978 34 1 4.7812 -1.8991 4.6152 35 1 3.9253 -0.9845 2.4983 36 1 -0.3382 -2.1948 -2.3867 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000977919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:31 Heat of formation + Delta-G solvation = 56.650063 kcal Electronic energy + Delta-G solvation = -23062.767368 eV Core-core repulsion = 19705.380463 eV Total energy + Delta-G solvation = -3357.386905 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.106 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.41663 -38.98768 -37.47390 -35.53054 -34.54007 -32.79128 -31.50332 -30.74024 -30.48737 -28.82664 -26.60155 -25.01177 -23.35475 -22.26235 -21.45732 -20.41146 -18.90070 -17.51677 -16.96466 -16.70904 -15.81672 -15.36363 -15.20297 -14.87346 -14.35721 -14.17363 -13.94407 -13.62383 -13.54388 -13.22448 -12.96287 -12.37968 -12.32596 -12.11955 -11.97886 -11.82952 -11.72629 -11.49149 -11.42837 -11.23367 -10.96106 -10.87198 -10.75271 -10.47446 -9.99426 -9.27803 -8.95919 -8.79071 -8.72587 -7.28130 -6.88361 -6.35100 -4.67306 1.00170 1.57710 2.74471 2.82250 2.96654 3.00682 3.02681 3.32554 3.64811 3.77347 4.05052 4.41649 4.51207 4.68120 4.75023 4.92701 5.03470 5.09858 5.25319 5.49572 5.62849 5.67631 5.94998 6.02908 6.14139 6.32822 6.36271 6.51284 6.58892 6.61126 6.63688 6.76253 6.89389 6.93815 7.04783 7.09661 7.37777 7.70173 8.11392 8.22811 8.29469 8.41995 8.62327 8.76381 9.23196 10.12710 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.010814 B = 0.007653 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.645518 B = 3657.584587 C = 5300.878271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.127 3.873 3 C -0.239 4.239 4 C 0.320 3.680 5 N -0.508 5.508 6 C 0.207 3.793 7 N -0.863 5.863 8 C -0.194 4.194 9 C 0.503 3.497 10 O -0.451 6.451 11 C -0.151 4.151 12 C -0.069 4.069 13 C -0.140 4.140 14 C -0.099 4.099 15 C -0.138 4.138 16 C -0.053 4.053 17 N -0.191 5.191 18 C -0.365 4.365 19 H 0.107 0.893 20 C 0.064 3.936 21 N -0.813 5.813 22 Si 0.923 3.077 23 H -0.263 1.263 24 H -0.276 1.276 25 H -0.266 1.266 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.392 0.608 30 H 0.395 0.605 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.136 0.864 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.378 -3.809 8.538 11.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.007 4.007 3 C -0.254 4.254 4 C 0.010 3.990 5 N -0.189 5.189 6 C 0.097 3.903 7 N -0.404 5.404 8 C -0.306 4.306 9 C 0.380 3.620 10 O -0.324 6.324 11 C -0.152 4.152 12 C -0.087 4.087 13 C -0.158 4.158 14 C -0.118 4.118 15 C -0.156 4.156 16 C -0.071 4.071 17 N 0.150 4.850 18 C -0.493 4.493 19 H 0.124 0.876 20 C -0.150 4.150 21 N -0.441 5.441 22 Si 0.747 3.253 23 H -0.187 1.187 24 H -0.201 1.201 25 H -0.190 1.190 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.219 0.781 30 H 0.222 0.778 31 H 0.147 0.853 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.154 0.846 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.948 -2.769 7.717 10.129 hybrid contribution -0.029 -0.997 -0.011 0.997 sum 5.919 -3.766 7.707 10.422 Atomic orbital electron populations 1.20252 0.88890 1.00846 1.02339 1.20102 0.92639 0.83956 1.04036 1.15220 0.90393 0.84676 1.35122 1.24822 0.92131 0.91575 0.90457 1.81109 1.09035 1.11961 1.16760 1.17637 0.85260 0.87671 0.99725 1.41078 1.04808 1.07977 1.86587 1.18370 0.86751 0.91572 1.33892 1.17977 0.81083 0.76150 0.86783 1.90610 1.56735 1.50457 1.34600 1.20778 0.98859 1.00010 0.95577 1.21372 0.94330 0.94439 0.98606 1.21061 1.01200 1.01207 0.92373 1.21298 0.96085 0.96492 0.97878 1.21142 0.97928 0.98333 0.98184 1.21518 0.97160 0.97296 0.91175 1.39141 1.00891 1.04799 1.40187 1.19677 1.18991 0.84813 1.25824 0.87587 1.25573 0.97598 0.99491 0.92382 1.69971 1.23615 1.38902 1.11638 0.86046 0.79290 0.80872 0.79138 1.18729 1.20075 1.19022 0.90304 0.91579 0.93184 0.78113 0.77802 0.85287 0.85976 0.86188 0.85807 0.84622 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 8.32 36.01 0.30 -1.05 16 2 C 0.13 2.86 6.32 -81.04 -0.51 2.35 16 3 C -0.24 -5.16 6.15 -104.65 -0.64 -5.80 16 4 C 0.32 6.78 15.46 -22.47 -0.35 6.43 16 5 N -0.51 -11.00 18.54 41.84 0.78 -10.23 16 6 C 0.21 4.23 7.52 -81.24 -0.61 3.62 16 7 N -0.86 -14.27 9.06 33.79 0.31 -13.96 16 8 C -0.19 -4.24 4.93 -83.41 -0.41 -4.66 16 9 C 0.50 10.45 5.98 -34.46 -0.21 10.25 16 10 O -0.45 -10.39 17.11 5.05 0.09 -10.31 16 11 C -0.15 -2.62 5.87 -104.92 -0.62 -3.23 16 12 C -0.07 -1.05 9.60 -39.19 -0.38 -1.43 16 13 C -0.14 -1.73 10.03 -39.63 -0.40 -2.13 16 14 C -0.10 -1.15 10.04 -39.49 -0.40 -1.54 16 15 C -0.14 -1.76 10.03 -39.64 -0.40 -2.16 16 16 C -0.05 -0.83 9.43 -39.19 -0.37 -1.20 16 17 N -0.19 -4.44 2.74 -54.69 -0.15 -4.59 16 18 C -0.37 -8.62 9.06 -14.94 -0.14 -8.75 16 19 H 0.11 2.44 7.90 -52.49 -0.41 2.03 16 20 C 0.06 1.47 3.87 -17.48 -0.07 1.40 16 21 N -0.81 -19.60 10.95 55.50 0.61 -18.99 16 22 Si 0.92 17.60 29.60 -169.99 -5.03 12.57 16 23 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 24 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 26 H 0.08 1.68 7.23 -51.93 -0.38 1.31 16 27 H 0.07 1.33 6.80 -51.93 -0.35 0.98 16 28 H 0.05 0.92 8.00 -51.93 -0.42 0.50 16 29 H 0.39 5.89 8.69 -40.82 -0.35 5.53 16 30 H 0.39 5.87 8.95 -40.82 -0.37 5.51 16 31 H 0.13 1.92 7.66 -52.49 -0.40 1.52 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.14 2.23 7.17 -52.48 -0.38 1.86 16 36 H 0.28 6.35 8.31 -40.82 -0.34 6.01 16 LS Contribution 326.82 15.07 4.93 4.93 Total: -1.00 -27.87 326.82 -7.13 -35.00 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -3.46 Total: 13.47 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -5.19 Total: -7.90 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 1.54 Total: -47.76 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.87 -7.13 -35.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000977919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.651 kcal (2) G-P(sol) polarization free energy of solvation -27.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds