Wall clock time and date at job start Tue Mar 31 2020 02:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38119 * 125.45479 * 2 1 4 4 C 1.43202 * 126.69605 * 0.02562 * 3 2 1 5 5 N 3.56955 * 90.22476 * 0.02562 * 2 1 3 6 6 C 1.46588 * 106.60867 * 180.02562 * 3 2 1 7 7 N 1.38362 * 126.95825 * 179.97438 * 6 3 2 8 8 C 1.39074 * 106.08129 * 359.97438 * 6 3 2 9 9 C 1.41210 * 125.96128 * 179.97438 * 8 6 3 10 10 O 1.21850 * 119.99909 * 274.56747 * 9 8 6 11 11 C 1.47991 * 119.99685 * 94.56547 * 9 8 6 12 12 C 1.39549 * 120.13654 * 174.89853 * 11 9 8 13 13 C 1.37966 * 119.85409 * 179.97438 * 12 11 9 14 14 C 1.38363 * 120.13990 * 0.02562 * 13 12 11 15 15 C 1.38365 * 120.28812 * 0.25954 * 14 13 12 16 16 C 1.37957 * 120.13776 * 359.44555 * 15 14 13 17 17 N 1.35444 * 125.44832 * 180.28799 * 2 1 3 18 18 C 1.36973 * 124.93420 * 0.03085 * 17 2 1 19 19 H 1.08001 * 119.99638 * 223.00789 * 18 17 2 20 20 C 1.39092 * 119.99734 * 43.01121 * 18 17 2 21 21 N 1.31252 * 120.00229 * 18.76395 * 20 18 17 22 22 Si 1.86800 * 119.99513 * 198.76440 * 20 18 17 23 23 H 1.48497 * 109.47291 * 60.00052 * 22 20 18 24 24 H 1.48499 * 109.47319 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47376 * 299.99908 * 22 20 18 26 26 H 1.09001 * 109.46996 * 85.82103 * 1 2 3 27 27 H 1.09002 * 109.47165 * 205.82567 * 1 2 3 28 28 H 1.09000 * 109.46817 * 325.82216 * 1 2 3 29 29 H 0.97001 * 119.99737 * 185.14555 * 7 6 3 30 30 H 0.97003 * 120.00039 * 5.14719 * 7 6 3 31 31 H 1.07999 * 120.07576 * 359.95253 * 12 11 9 32 32 H 1.07996 * 119.93074 * 180.02562 * 13 12 11 33 33 H 1.08002 * 119.85621 * 179.97438 * 14 13 12 34 34 H 1.07995 * 119.92550 * 179.72263 * 15 14 13 35 35 H 1.08003 * 120.07175 * 180.25226 * 16 15 14 36 36 H 0.97008 * 119.99541 * 184.92039 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3082 1.1251 0.0000 4 6 1.8693 2.4882 0.0005 5 7 1.5210 3.5695 0.0016 6 6 3.6955 0.6516 -0.0006 7 7 4.8399 1.4292 -0.0013 8 6 3.6284 -0.7376 -0.0004 9 6 4.7300 -1.6210 -0.0013 10 8 5.2569 -1.9367 -1.0537 11 6 5.2447 -2.1632 1.2759 12 6 6.2629 -3.1175 1.2723 13 6 6.7386 -3.6187 2.4664 14 6 6.2080 -3.1776 3.6657 15 6 5.1942 -2.2360 3.6759 16 6 4.7139 -1.7224 2.4889 17 7 2.2926 -1.1034 -0.0055 18 6 1.8327 -2.3936 -0.0126 19 1 2.2954 -3.1352 0.6216 20 6 0.7699 -2.7485 -0.8367 21 7 0.4459 -1.9862 -1.8549 22 14 -0.1964 -4.3100 -0.4942 23 1 -0.8028 -4.2302 0.8590 24 1 -1.2701 -4.4605 -1.5090 25 1 0.7150 -5.4806 -0.5600 26 1 -0.3633 0.0749 -1.0249 27 1 -0.3633 -0.9250 0.4477 28 1 -0.3633 0.8502 0.5773 29 1 5.7112 1.0097 -0.0771 30 1 4.7709 2.3938 0.0739 31 1 6.6774 -3.4632 0.3368 32 1 7.5269 -4.3569 2.4651 33 1 6.5836 -3.5733 4.5978 34 1 4.7812 -1.8991 4.6152 35 1 3.9253 -0.9845 2.4983 36 1 -0.3382 -2.1948 -2.3867 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000977919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:30 Heat of formation + Delta-G solvation = 42.007087 kcal Electronic energy + Delta-G solvation = -23063.402335 eV Core-core repulsion = 19705.380463 eV Total energy + Delta-G solvation = -3358.021872 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.106 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.03226 -40.33691 -38.88632 -37.24835 -36.16722 -34.46357 -32.94329 -31.94283 -31.79990 -30.46357 -28.18743 -26.71428 -24.74989 -23.41306 -22.95867 -21.95314 -20.44917 -19.00673 -18.67539 -18.08941 -17.23532 -16.92655 -16.51615 -16.48386 -15.75266 -15.59516 -15.42762 -15.11105 -14.94721 -14.53349 -14.29374 -14.09212 -13.93781 -13.67800 -13.49951 -13.40522 -13.39489 -13.07008 -12.87746 -12.57565 -12.53149 -12.28570 -12.08650 -11.93210 -11.60118 -10.83841 -10.66518 -9.86791 -9.84278 -8.99905 -8.61686 -7.97327 -6.46956 -0.24905 0.51209 1.12563 1.34363 1.37812 1.45492 1.54730 1.69725 1.93603 2.19071 2.78187 2.80285 2.95525 2.99634 3.27503 3.35742 3.87566 4.01092 4.14230 4.28104 4.32973 4.53962 4.59451 4.68144 4.78169 4.89516 4.98296 5.02114 5.16619 5.18621 5.20983 5.37354 5.51326 5.56162 5.58389 5.73736 5.96773 6.05483 6.49800 6.58036 6.73982 6.86500 7.03930 7.07566 7.50067 8.40698 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.010814 B = 0.007653 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.645518 B = 3657.584587 C = 5300.878271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.112 3.888 3 C -0.251 4.251 4 C 0.329 3.671 5 N -0.515 5.515 6 C 0.213 3.787 7 N -0.848 5.848 8 C -0.215 4.215 9 C 0.502 3.498 10 O -0.492 6.492 11 C -0.178 4.178 12 C -0.081 4.081 13 C -0.133 4.133 14 C -0.082 4.082 15 C -0.136 4.136 16 C -0.064 4.064 17 N -0.203 5.203 18 C -0.386 4.386 19 H 0.103 0.897 20 C 0.031 3.969 21 N -0.847 5.847 22 Si 0.985 3.015 23 H -0.250 1.250 24 H -0.272 1.272 25 H -0.268 1.268 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.400 0.600 30 H 0.405 0.595 31 H 0.122 0.878 32 H 0.156 0.844 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.118 0.882 36 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.125 -4.911 10.907 13.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.023 4.023 3 C -0.266 4.266 4 C 0.019 3.981 5 N -0.195 5.195 6 C 0.101 3.899 7 N -0.390 5.390 8 C -0.327 4.327 9 C 0.383 3.617 10 O -0.369 6.369 11 C -0.179 4.179 12 C -0.100 4.100 13 C -0.151 4.151 14 C -0.100 4.100 15 C -0.153 4.153 16 C -0.083 4.083 17 N 0.137 4.863 18 C -0.513 4.513 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.476 5.476 22 Si 0.805 3.195 23 H -0.174 1.174 24 H -0.196 1.196 25 H -0.193 1.193 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.229 0.771 30 H 0.234 0.766 31 H 0.140 0.860 32 H 0.174 0.826 33 H 0.181 0.819 34 H 0.169 0.831 35 H 0.136 0.864 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.718 -3.839 10.109 12.730 hybrid contribution -0.153 -0.628 -0.675 0.935 sum 6.564 -4.467 9.433 12.330 Atomic orbital electron populations 1.20187 0.87882 1.01504 1.01851 1.20498 0.93578 0.84142 1.04096 1.15306 0.90883 0.84690 1.35744 1.24675 0.91893 0.91306 0.90177 1.81111 1.09232 1.12029 1.17173 1.17739 0.85952 0.87619 0.98553 1.41022 1.04183 1.08302 1.85518 1.18770 0.86923 0.92527 1.34456 1.18381 0.80290 0.75272 0.87805 1.90571 1.57999 1.52186 1.36154 1.20544 1.00961 1.02142 0.94289 1.21474 0.94159 0.94438 0.99895 1.21451 1.01293 1.00979 0.91359 1.21802 0.94328 0.94625 0.99247 1.21479 0.97890 0.98012 0.97954 1.21462 0.97245 0.97676 0.91882 1.39277 1.01422 1.04928 1.40632 1.19881 1.19838 0.85203 1.26384 0.87964 1.26369 0.97875 1.02083 0.91679 1.70038 1.24268 1.40758 1.12518 0.85127 0.77833 0.76935 0.79564 1.17358 1.19624 1.19298 0.91429 0.91704 0.91434 0.77104 0.76600 0.85993 0.82600 0.81931 0.83065 0.86361 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.36 8.32 71.24 0.59 -1.77 16 2 C 0.11 5.12 6.32 41.97 0.27 5.39 16 3 C -0.25 -10.96 6.15 -19.88 -0.12 -11.08 16 4 C 0.33 13.88 15.46 88.33 1.37 15.25 16 5 N -0.51 -21.97 18.54 19.01 0.35 -21.61 16 6 C 0.21 8.87 7.52 40.49 0.30 9.17 16 7 N -0.85 -28.06 9.06 -47.01 -0.43 -28.49 16 8 C -0.21 -9.73 4.93 39.02 0.19 -9.54 16 9 C 0.50 21.73 5.98 25.59 0.15 21.88 16 10 O -0.49 -23.88 17.11 -4.83 -0.08 -23.96 16 11 C -0.18 -6.25 5.87 -20.06 -0.12 -6.37 16 12 C -0.08 -2.41 9.60 22.52 0.22 -2.20 16 13 C -0.13 -2.84 10.03 22.24 0.22 -2.61 16 14 C -0.08 -1.53 10.04 22.33 0.22 -1.31 16 15 C -0.14 -3.06 10.03 22.23 0.22 -2.84 16 16 C -0.06 -1.98 9.43 22.52 0.21 -1.77 16 17 N -0.20 -9.74 2.74 -326.93 -0.90 -10.63 16 18 C -0.39 -18.69 9.06 84.10 0.76 -17.93 16 19 H 0.10 4.87 7.90 -2.91 -0.02 4.85 16 20 C 0.03 1.45 3.87 84.98 0.33 1.78 16 21 N -0.85 -41.67 10.95 21.68 0.24 -41.44 16 22 Si 0.98 35.99 29.60 68.60 2.03 38.02 16 23 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 24 H -0.27 -9.65 7.11 99.48 0.71 -8.95 16 25 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 26 H 0.07 2.94 7.23 -2.39 -0.02 2.93 16 27 H 0.06 2.65 6.80 -2.39 -0.02 2.63 16 28 H 0.07 2.48 8.00 -2.39 -0.02 2.46 16 29 H 0.40 12.10 8.69 -92.71 -0.81 11.29 16 30 H 0.40 11.81 8.95 -92.71 -0.83 10.98 16 31 H 0.12 3.69 7.66 -2.91 -0.02 3.67 16 32 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 33 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.12 3.99 7.17 -2.91 -0.02 3.97 16 36 H 0.29 13.10 8.31 -92.70 -0.77 12.33 16 Total: -1.00 -61.93 326.82 5.56 -56.37 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -0.47 Total: 35.68 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 4.82 Total: -3.94 kcal Atomic # 7 Polarization: -101.44 SS G_CDS: -0.73 Total: -102.17 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.08 Total: -23.96 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.02 kcal Total: -61.93 5.56 -56.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000977919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.376 kcal (2) G-P(sol) polarization free energy of solvation -61.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds