Wall clock time and date at job start Tue Mar 31 2020 02:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38145 * 120.02151 * 2 1 4 4 C 1.38443 * 120.04497 * 180.02562 * 3 2 1 5 5 F 1.35095 * 119.95755 * 179.97438 * 4 3 2 6 6 C 1.38497 * 120.08657 * 359.97438 * 4 3 2 7 7 C 1.38092 * 120.04865 * 359.72109 * 6 4 3 8 8 C 1.38821 * 120.02382 * 179.97438 * 2 1 3 9 9 N 1.40062 * 120.04423 * 0.02562 * 8 2 1 10 10 C 1.34770 * 120.00040 * 155.46678 * 9 8 2 11 11 O 1.21592 * 120.00106 * 354.37024 * 10 9 8 12 12 N 1.34779 * 119.99979 * 174.10284 * 10 9 8 13 13 C 1.46503 * 119.99846 * 180.26957 * 12 10 9 14 14 C 1.50703 * 109.46907 * 179.97438 * 13 12 10 15 15 O 1.21290 * 120.00188 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99940 * 180.02562 * 14 13 12 17 17 C 1.37105 * 119.99990 * 179.97438 * 16 14 13 18 18 H 1.07994 * 119.99580 * 0.02562 * 17 16 14 19 19 C 1.38946 * 119.99810 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00223 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99984 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47412 * 89.99967 * 21 19 17 23 23 H 1.48492 * 109.47253 * 210.00252 * 21 19 17 24 24 H 1.48504 * 109.46719 * 329.99608 * 21 19 17 25 25 H 1.09001 * 109.47118 * 270.01958 * 1 2 3 26 26 H 1.09000 * 109.47190 * 30.01891 * 1 2 3 27 27 H 1.08998 * 109.47489 * 150.02118 * 1 2 3 28 28 H 1.07998 * 119.97731 * 359.97438 * 3 2 1 29 29 H 1.08000 * 119.97628 * 180.02562 * 6 4 3 30 30 H 1.07996 * 120.03005 * 180.29452 * 7 6 4 31 31 H 0.97001 * 119.99757 * 335.45903 * 9 8 2 32 32 H 0.96999 * 119.99742 * 0.27534 * 12 10 9 33 33 H 1.09000 * 109.47309 * 299.99942 * 13 12 10 34 34 H 1.08993 * 109.46760 * 60.00278 * 13 12 10 35 35 H 0.96997 * 119.99799 * 359.97438 * 16 14 13 36 36 H 0.97002 * 120.00421 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1961 0.0000 4 6 3.5826 1.1967 -0.0005 5 9 4.2567 2.3674 -0.0011 6 6 4.2774 -0.0014 -0.0005 7 6 3.5902 -1.1992 0.0058 8 6 2.2016 -1.2019 0.0005 9 7 1.5027 -2.4157 0.0005 10 6 2.0868 -3.5296 -0.4836 11 8 3.1792 -3.4621 -1.0134 12 7 1.4625 -4.7192 -0.3758 13 6 2.1001 -5.9309 -0.8968 14 6 1.2020 -7.1161 -0.6518 15 8 0.1347 -6.9637 -0.0963 16 7 1.5854 -8.3456 -1.0492 17 6 0.7686 -9.4239 -0.8259 18 1 -0.1821 -9.2879 -0.3320 19 6 1.1636 -10.6913 -1.2360 20 7 2.3198 -10.8564 -1.8384 21 14 0.0504 -12.1604 -0.9325 22 1 -0.8595 -12.3401 -2.0922 23 1 0.8780 -13.3810 -0.7589 24 1 -0.7521 -11.9279 0.2952 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6581 2.1314 -0.0004 29 1 5.3574 0.0011 -0.0005 30 1 4.1323 -2.1333 0.0106 31 1 0.5983 -2.4546 0.3491 32 1 0.5910 -4.7730 0.0467 33 1 2.2716 -5.8197 -1.9674 34 1 3.0527 -6.0866 -0.3905 35 1 2.4391 -8.4675 -1.4931 36 1 2.5954 -11.7412 -2.1251 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348083370.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:22 Heat of formation + Delta-G solvation = -85.362990 kcal Electronic energy + Delta-G solvation = -22295.089689 eV Core-core repulsion = 18500.775411 eV Total energy + Delta-G solvation = -3794.314278 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.95704 -40.86272 -39.02466 -38.14356 -34.82181 -34.60354 -33.80746 -32.86846 -31.44539 -29.69751 -27.74866 -26.91470 -24.61613 -23.21752 -21.77541 -20.83897 -19.70455 -18.73152 -18.21762 -17.65276 -17.24519 -16.41106 -15.80391 -15.61402 -15.55586 -15.19459 -14.70734 -14.41253 -14.19589 -14.15141 -13.86061 -13.74044 -13.56145 -13.36065 -12.92945 -12.31407 -12.28905 -12.19937 -11.95777 -11.67893 -11.35477 -11.16870 -10.51172 -10.49603 -10.36585 -10.05329 -9.69019 -9.07753 -8.99776 -8.70851 -8.16081 -8.01787 -6.56553 -3.98913 0.95711 1.06909 2.49080 2.99889 3.08181 3.19160 3.24146 3.53653 3.67995 4.00607 4.11955 4.17711 4.51835 4.56826 4.79418 4.91540 5.01690 5.11945 5.25862 5.28543 5.29991 5.63257 5.76612 5.83539 5.88503 5.92903 5.98363 6.07706 6.16485 6.30390 6.54975 6.82446 6.85315 7.41160 7.86279 7.92322 8.38282 8.47994 8.99130 9.33068 9.80425 10.60171 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.044637 B = 0.002461 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.135899 B =11373.273122 C =11917.577551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.097 4.097 3 C -0.133 4.133 4 C 0.072 3.928 5 F -0.145 7.145 6 C -0.135 4.135 7 C -0.101 4.101 8 C 0.169 3.831 9 N -0.682 5.682 10 C 0.703 3.297 11 O -0.577 6.577 12 N -0.716 5.716 13 C 0.126 3.874 14 C 0.427 3.573 15 O -0.599 6.599 16 N -0.547 5.547 17 C -0.306 4.306 18 H 0.106 0.894 19 C 0.026 3.974 20 N -0.893 5.893 21 Si 0.934 3.066 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.268 1.268 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.160 0.840 31 H 0.409 0.591 32 H 0.409 0.591 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.396 0.604 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.036 19.864 3.431 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.101 4.101 3 C -0.152 4.152 4 C 0.052 3.948 5 F -0.123 7.123 6 C -0.154 4.154 7 C -0.121 4.121 8 C 0.072 3.928 9 N -0.329 5.329 10 C 0.404 3.596 11 O -0.455 6.455 12 N -0.372 5.372 13 C -0.002 4.002 14 C 0.212 3.788 15 O -0.485 6.485 16 N -0.181 5.181 17 C -0.435 4.435 18 H 0.124 0.876 19 C -0.177 4.177 20 N -0.533 5.533 21 Si 0.760 3.240 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.193 1.193 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.177 0.823 31 H 0.246 0.754 32 H 0.247 0.753 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.230 0.770 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.339 19.708 3.237 19.975 hybrid contribution -0.641 -0.718 0.115 0.969 sum -0.302 18.990 3.352 19.286 Atomic orbital electron populations 1.20753 0.90267 1.03481 1.02730 1.19373 0.96344 0.90740 1.03604 1.20715 0.92113 0.98427 1.03937 1.17630 0.90106 0.81267 1.05842 1.91474 1.80425 1.46163 1.94269 1.21062 1.00916 0.90653 1.02782 1.21393 0.92504 0.99424 0.98824 1.17409 0.91314 0.83962 1.00078 1.42649 1.18810 1.06387 1.65049 1.15830 0.84241 0.80253 0.79318 1.90885 1.20317 1.85253 1.49007 1.44803 1.24063 1.04960 1.63400 1.20867 0.96069 0.83051 1.00171 1.19696 0.88514 0.84390 0.86179 1.90495 1.24820 1.84777 1.48446 1.41785 1.20174 1.05337 1.50845 1.19726 1.02218 0.84751 1.36847 0.87644 1.25335 0.96784 0.99231 0.96322 1.69609 1.20171 1.24781 1.38772 0.85805 0.79347 0.79786 0.79058 1.20228 1.20759 1.19298 0.90667 0.90767 0.91288 0.84610 0.84553 0.82266 0.75438 0.75296 0.89674 0.89654 0.76978 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.45 36.00 0.34 -0.45 16 2 C -0.10 -0.94 5.90 -104.44 -0.62 -1.56 16 3 C -0.13 -1.27 9.67 -39.54 -0.38 -1.66 16 4 C 0.07 0.79 7.30 -39.41 -0.29 0.50 16 5 F -0.14 -1.65 17.26 2.25 0.04 -1.61 16 6 C -0.13 -1.51 10.02 -39.54 -0.40 -1.91 16 7 C -0.10 -1.27 8.72 -39.40 -0.34 -1.62 16 8 C 0.17 1.98 6.41 -83.65 -0.54 1.45 16 9 N -0.68 -7.83 4.99 -14.21 -0.07 -7.90 16 10 C 0.70 10.44 8.37 -86.92 -0.73 9.71 16 11 O -0.58 -10.12 13.51 5.28 0.07 -10.05 16 12 N -0.72 -10.97 5.53 -66.41 -0.37 -11.34 16 13 C 0.13 2.19 6.15 -5.19 -0.03 2.16 16 14 C 0.43 9.35 7.85 -10.99 -0.09 9.26 16 15 O -0.60 -14.67 15.24 5.55 0.08 -14.58 16 16 N -0.55 -13.12 5.29 -10.96 -0.06 -13.17 16 17 C -0.31 -8.11 9.68 -14.93 -0.14 -8.25 16 18 H 0.11 2.91 7.16 -52.49 -0.38 2.53 16 19 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 20 N -0.89 -23.39 13.05 55.50 0.72 -22.67 16 21 Si 0.93 20.11 29.55 -169.99 -5.02 15.09 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.07 0.46 6.98 -51.93 -0.36 0.10 16 28 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.16 2.25 5.78 -52.49 -0.30 1.95 16 31 H 0.41 3.55 7.41 -40.82 -0.30 3.24 16 32 H 0.41 6.03 7.46 -40.82 -0.30 5.73 16 33 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.40 9.14 7.90 -40.82 -0.32 8.81 16 36 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 320.38 15.07 4.83 4.83 Total: -1.00 -30.62 320.38 -6.72 -37.34 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -3.64 Total: 15.84 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -3.31 Total: 8.22 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.23 Total: -55.08 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: 0.16 Total: -24.64 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.62 -6.72 -37.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348083370.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.020 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds