Wall clock time and date at job start Tue Mar 31 2020 03:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47313 * 2 1 4 4 C 1.46502 * 120.00228 * 274.94155 * 3 2 1 5 5 C 1.50701 * 109.46766 * 263.09690 * 4 3 2 6 6 H 1.07996 * 120.00230 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99538 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99984 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99660 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47021 * 90.00081 * 9 7 5 11 11 H 1.48495 * 109.47080 * 209.99746 * 9 7 5 12 12 H 1.48504 * 109.47255 * 330.00128 * 9 7 5 13 13 C 1.34784 * 119.99838 * 94.93645 * 3 2 1 14 14 O 1.21353 * 119.99761 * 3.70318 * 13 3 2 15 15 C 1.49364 * 119.99878 * 183.69487 * 13 3 2 16 16 O 1.21366 * 119.99824 * 354.28646 * 15 13 3 17 17 N 1.34771 * 119.99927 * 174.55787 * 15 13 3 18 18 C 1.39243 * 120.00224 * 184.83382 * 17 15 13 19 19 C 1.39012 * 119.68351 * 185.18969 * 18 17 15 20 20 C 1.38440 * 119.15431 * 179.79097 * 19 18 17 21 21 C 1.38711 * 118.52891 * 0.47577 * 20 19 18 22 22 C 1.38442 * 119.29063 * 359.74936 * 21 20 19 23 23 F 1.35102 * 119.60461 * 179.97438 * 22 21 20 24 24 N 1.32088 * 120.79132 * 0.02562 * 22 21 20 25 25 H 1.08999 * 109.47408 * 300.00252 * 1 2 3 26 26 H 1.09002 * 109.46749 * 59.99915 * 1 2 3 27 27 H 1.09000 * 109.47273 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46948 * 239.99846 * 2 1 3 29 29 H 1.09002 * 109.46749 * 120.00085 * 2 1 3 30 30 H 1.09003 * 109.46848 * 23.09551 * 4 3 2 31 31 H 1.08997 * 109.47387 * 143.09512 * 4 3 2 32 32 H 0.97007 * 119.99584 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00088 * 4.83667 * 17 15 13 34 34 H 1.07994 * 120.41940 * 0.02562 * 19 18 17 35 35 H 1.08001 * 120.73264 * 180.22432 * 20 19 18 36 36 H 1.07995 * 120.35404 * 179.76613 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1596 2.1083 -1.2640 5 6 3.5891 2.0260 -1.7338 6 1 4.3195 1.4866 -1.1491 7 6 3.9645 2.6396 -2.9101 8 7 3.0752 3.2970 -3.6218 9 14 5.7367 2.5383 -3.4921 10 1 5.9073 1.3401 -4.3526 11 1 6.0728 3.7580 -4.2695 12 1 6.6386 2.4361 -2.3167 13 6 2.3377 1.9830 1.1630 14 8 2.2850 1.3600 2.2030 15 6 2.7567 3.4167 1.1715 16 8 2.9099 4.0103 0.1241 17 7 2.9699 4.0495 2.3421 18 6 3.2620 5.4108 2.3546 19 6 3.5870 6.0342 3.5539 20 6 3.8797 7.3873 3.5530 21 6 3.8275 8.0756 2.3499 22 6 3.4918 7.3931 1.1931 23 9 3.4385 8.0574 0.0179 24 7 3.2220 6.1005 1.2248 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.5046 1.6642 -2.0137 31 1 1.8856 3.1527 -1.1150 32 1 3.3393 3.7283 -4.4496 33 1 2.9199 3.5565 3.1761 34 1 3.6145 5.4693 4.4739 35 1 4.1390 7.8965 4.4695 36 1 4.0466 9.1326 2.3159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793034286.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:28 Heat of formation + Delta-G solvation = -39.315525 kcal Electronic energy + Delta-G solvation = -23873.313765 eV Core-core repulsion = 20080.996255 eV Total energy + Delta-G solvation = -3792.317510 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.81026 -40.81023 -39.58217 -37.75800 -35.79198 -34.39239 -32.63615 -32.53565 -30.48972 -29.87324 -27.07231 -25.36597 -23.73872 -23.23278 -23.01585 -21.39019 -19.43760 -18.33205 -17.22397 -16.85043 -16.40972 -16.19026 -16.09337 -15.96025 -15.44553 -15.16676 -14.82103 -14.21242 -14.00193 -13.65642 -13.59095 -13.09849 -12.97945 -12.82683 -12.43874 -12.32482 -12.02105 -11.68297 -11.62032 -10.93587 -10.85655 -10.66730 -10.59284 -10.40827 -9.96325 -9.83348 -9.67904 -9.64324 -8.63248 -8.26461 -8.21435 -7.82880 -5.99604 -4.02601 0.89181 1.15402 2.17197 2.59782 3.33055 3.40065 3.43072 3.55613 3.58405 3.99308 4.10689 4.46432 4.51132 4.77362 4.92107 4.98924 5.14833 5.37162 5.51801 5.59974 5.67774 5.69464 5.78486 5.96889 6.15048 6.25190 6.27549 6.53865 6.69181 6.71995 7.05006 7.39161 7.43716 7.87562 7.88784 8.10673 8.21742 8.37679 8.64551 8.98483 9.60543 11.09280 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.011888 B = 0.006382 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.652878 B = 4386.496404 C = 6045.389389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 N -0.556 5.556 4 C 0.220 3.780 5 C -0.522 4.522 6 H 0.053 0.947 7 C 0.071 3.929 8 N -0.886 5.886 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.276 1.276 13 C 0.510 3.490 14 O -0.564 6.564 15 C 0.476 3.524 16 O -0.377 6.377 17 N -0.648 5.648 18 C 0.412 3.588 19 C -0.225 4.225 20 C -0.020 4.020 21 C -0.238 4.238 22 C 0.347 3.653 23 F -0.108 7.108 24 N -0.508 5.508 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.262 0.738 33 H 0.426 0.574 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.489 4.898 14.500 15.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.015 4.015 3 N -0.286 5.286 4 C 0.102 3.898 5 C -0.561 4.561 6 H 0.072 0.928 7 C -0.132 4.132 8 N -0.524 5.524 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.292 3.708 14 O -0.446 6.446 15 C 0.255 3.745 16 O -0.237 6.237 17 N -0.298 5.298 18 C 0.179 3.821 19 C -0.249 4.249 20 C -0.046 4.046 21 C -0.261 4.261 22 C 0.192 3.808 23 F -0.087 7.087 24 N -0.229 5.229 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.264 0.736 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.705 4.590 13.104 13.989 hybrid contribution 1.227 0.282 0.319 1.299 sum -0.478 4.872 13.423 14.288 Atomic orbital electron populations 1.22113 0.96187 1.01640 1.02253 1.21454 0.93865 0.82892 1.03244 1.48320 1.58566 1.13456 1.08229 1.20121 0.97789 0.94002 0.77896 1.21193 0.94143 1.33931 1.06799 0.92831 1.24806 0.97259 0.94702 0.96444 1.69913 1.33682 1.33931 1.14900 0.86572 0.85179 0.77399 0.78668 1.20718 1.21091 1.20108 1.19678 0.79570 0.87041 0.84545 1.90637 1.55899 1.66018 1.32073 1.20630 0.81078 0.88873 0.83897 1.91060 1.38374 1.65715 1.28584 1.43509 1.68920 1.05824 1.11512 1.17965 0.91187 0.84707 0.88235 1.21476 1.09276 0.96349 0.97804 1.21154 0.92920 0.92864 0.97651 1.21667 1.09975 1.02354 0.92110 1.17898 0.94781 0.86559 0.81532 1.91659 1.93056 1.77852 1.46106 1.66818 1.19663 1.07090 1.29345 0.92850 0.92141 0.91931 0.89882 0.90312 0.94899 0.90804 0.92795 0.73570 0.83790 0.83537 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 10.24 37.16 0.38 -2.09 16 2 C 0.11 1.93 6.18 -4.04 -0.02 1.90 16 3 N -0.56 -12.00 2.48 -175.60 -0.43 -12.44 16 4 C 0.22 5.61 4.79 -5.19 -0.02 5.59 16 5 C -0.52 -14.62 8.31 -34.44 -0.29 -14.91 16 6 H 0.05 1.52 7.81 -52.49 -0.41 1.11 16 7 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 8 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 9 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 13 C 0.51 10.71 7.67 -11.62 -0.09 10.62 16 14 O -0.56 -11.52 15.97 5.49 0.09 -11.43 16 15 C 0.48 9.97 7.71 -11.63 -0.09 9.89 16 16 O -0.38 -9.47 10.67 5.48 0.06 -9.41 16 17 N -0.65 -10.58 5.38 -11.87 -0.06 -10.64 16 18 C 0.41 6.52 7.40 -154.81 -1.15 5.37 16 19 C -0.23 -2.44 9.94 -39.22 -0.39 -2.83 16 20 C -0.02 -0.19 10.16 -39.33 -0.40 -0.59 16 21 C -0.24 -2.71 10.08 -39.33 -0.40 -3.11 16 22 C 0.35 5.68 8.41 -17.37 -0.15 5.53 16 23 F -0.11 -1.89 17.29 2.25 0.04 -1.85 16 24 N -0.51 -9.78 7.93 -12.73 -0.10 -9.88 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 29 H 0.08 1.35 7.24 -51.93 -0.38 0.98 16 30 H 0.03 0.86 8.02 -51.93 -0.42 0.44 16 31 H 0.07 2.07 5.41 -51.93 -0.28 1.79 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.43 5.50 8.18 -40.82 -0.33 5.17 16 34 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 321.87 15.07 4.85 4.85 Total: -1.00 -34.34 321.87 -6.47 -40.81 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -3.91 Total: 1.05 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: -2.71 Total: 17.32 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.14 Total: -58.68 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.15 Total: -20.84 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.34 -6.47 -40.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793034286.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.492 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds