Wall clock time and date at job start Tue Mar 31 2020 03:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47313 * 2 1 4 4 C 1.46502 * 120.00228 * 274.94155 * 3 2 1 5 5 C 1.50701 * 109.46766 * 263.09690 * 4 3 2 6 6 H 1.07996 * 120.00230 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99538 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99984 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99660 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47021 * 90.00081 * 9 7 5 11 11 H 1.48495 * 109.47080 * 209.99746 * 9 7 5 12 12 H 1.48504 * 109.47255 * 330.00128 * 9 7 5 13 13 C 1.34784 * 119.99838 * 94.93645 * 3 2 1 14 14 O 1.21353 * 119.99761 * 3.70318 * 13 3 2 15 15 C 1.49364 * 119.99878 * 183.69487 * 13 3 2 16 16 O 1.21366 * 119.99824 * 354.28646 * 15 13 3 17 17 N 1.34771 * 119.99927 * 174.55787 * 15 13 3 18 18 C 1.39243 * 120.00224 * 184.83382 * 17 15 13 19 19 C 1.39012 * 119.68351 * 185.18969 * 18 17 15 20 20 C 1.38440 * 119.15431 * 179.79097 * 19 18 17 21 21 C 1.38711 * 118.52891 * 0.47577 * 20 19 18 22 22 C 1.38442 * 119.29063 * 359.74936 * 21 20 19 23 23 F 1.35102 * 119.60461 * 179.97438 * 22 21 20 24 24 N 1.32088 * 120.79132 * 0.02562 * 22 21 20 25 25 H 1.08999 * 109.47408 * 300.00252 * 1 2 3 26 26 H 1.09002 * 109.46749 * 59.99915 * 1 2 3 27 27 H 1.09000 * 109.47273 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46948 * 239.99846 * 2 1 3 29 29 H 1.09002 * 109.46749 * 120.00085 * 2 1 3 30 30 H 1.09003 * 109.46848 * 23.09551 * 4 3 2 31 31 H 1.08997 * 109.47387 * 143.09512 * 4 3 2 32 32 H 0.97007 * 119.99584 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00088 * 4.83667 * 17 15 13 34 34 H 1.07994 * 120.41940 * 0.02562 * 19 18 17 35 35 H 1.08001 * 120.73264 * 180.22432 * 20 19 18 36 36 H 1.07995 * 120.35404 * 179.76613 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1596 2.1083 -1.2640 5 6 3.5891 2.0260 -1.7338 6 1 4.3195 1.4866 -1.1491 7 6 3.9645 2.6396 -2.9101 8 7 3.0752 3.2970 -3.6218 9 14 5.7367 2.5383 -3.4921 10 1 5.9073 1.3401 -4.3526 11 1 6.0728 3.7580 -4.2695 12 1 6.6386 2.4361 -2.3167 13 6 2.3377 1.9830 1.1630 14 8 2.2850 1.3600 2.2030 15 6 2.7567 3.4167 1.1715 16 8 2.9099 4.0103 0.1241 17 7 2.9699 4.0495 2.3421 18 6 3.2620 5.4108 2.3546 19 6 3.5870 6.0342 3.5539 20 6 3.8797 7.3873 3.5530 21 6 3.8275 8.0756 2.3499 22 6 3.4918 7.3931 1.1931 23 9 3.4385 8.0574 0.0179 24 7 3.2220 6.1005 1.2248 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.5046 1.6642 -2.0137 31 1 1.8856 3.1527 -1.1150 32 1 3.3393 3.7283 -4.4496 33 1 2.9199 3.5565 3.1761 34 1 3.6145 5.4693 4.4739 35 1 4.1390 7.8965 4.4695 36 1 4.0466 9.1326 2.3159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793034286.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:28 Heat of formation + Delta-G solvation = -63.400072 kcal Electronic energy + Delta-G solvation = -23874.358149 eV Core-core repulsion = 20080.996255 eV Total energy + Delta-G solvation = -3793.361894 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.01591 -42.18323 -40.95777 -39.29034 -37.44121 -35.80621 -34.72151 -33.57106 -32.04808 -30.99059 -29.08254 -26.79436 -25.05116 -24.84734 -24.40369 -22.76023 -20.90210 -19.62409 -18.82275 -18.59519 -18.00648 -17.63208 -17.25913 -17.03813 -16.80276 -16.72461 -16.56605 -16.01169 -15.49012 -15.11328 -14.69609 -14.50718 -14.38859 -14.14145 -14.05951 -13.67224 -13.46383 -13.22291 -13.17727 -12.77871 -12.73945 -12.37154 -12.09603 -11.85928 -11.82947 -11.66323 -10.98516 -10.90660 -10.58576 -9.98015 -9.64050 -9.35713 -8.18439 -6.27923 -0.20694 0.17948 0.65196 1.25058 1.32736 1.35858 1.44345 2.16827 2.29090 2.40189 2.71741 2.78085 3.15409 3.35390 3.67441 3.84182 4.12818 4.14413 4.22898 4.33243 4.50125 4.69754 4.74184 4.90052 4.91572 4.99254 5.07204 5.11178 5.25029 5.37915 5.49497 5.71481 5.73895 5.84713 6.07008 6.25422 6.59321 6.77618 6.93359 7.12312 7.38669 8.89823 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.011888 B = 0.006382 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.652878 B = 4386.496404 C = 6045.389389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.101 3.899 3 N -0.564 5.564 4 C 0.241 3.759 5 C -0.525 4.525 6 H 0.045 0.955 7 C 0.019 3.981 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.263 1.263 11 H -0.285 1.285 12 H -0.277 1.277 13 C 0.507 3.493 14 O -0.557 6.557 15 C 0.475 3.525 16 O -0.433 6.433 17 N -0.633 5.633 18 C 0.370 3.630 19 C -0.194 4.194 20 C -0.005 4.005 21 C -0.208 4.208 22 C 0.297 3.703 23 F -0.132 7.132 24 N -0.570 5.570 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.021 0.979 31 H 0.047 0.953 32 H 0.263 0.737 33 H 0.440 0.560 34 H 0.189 0.811 35 H 0.206 0.794 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 5.213 17.758 18.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.020 4.020 3 N -0.294 5.294 4 C 0.121 3.879 5 C -0.564 4.564 6 H 0.063 0.937 7 C -0.180 4.180 8 N -0.559 5.559 9 Si 0.779 3.221 10 H -0.188 1.188 11 H -0.211 1.211 12 H -0.203 1.203 13 C 0.289 3.711 14 O -0.438 6.438 15 C 0.255 3.745 16 O -0.298 6.298 17 N -0.285 5.285 18 C 0.139 3.861 19 C -0.217 4.217 20 C -0.030 4.030 21 C -0.231 4.231 22 C 0.143 3.857 23 F -0.112 7.112 24 N -0.292 5.292 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.282 0.718 34 H 0.206 0.794 35 H 0.223 0.777 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.691 4.897 16.434 17.162 hybrid contribution 0.904 0.255 -0.486 1.057 sum 0.213 5.152 15.949 16.761 Atomic orbital electron populations 1.22043 0.93971 1.03683 1.01493 1.21721 0.95711 0.80906 1.03678 1.48288 1.59225 1.14748 1.07149 1.19561 0.96244 0.92952 0.79137 1.21391 0.95093 1.33273 1.06593 0.93678 1.25596 1.01138 0.94506 0.96803 1.70028 1.35532 1.35007 1.15361 0.85636 0.80391 0.77895 0.78181 1.18770 1.21109 1.20255 1.19823 0.79384 0.87385 0.84461 1.90618 1.55682 1.66027 1.31508 1.20711 0.80419 0.88740 0.84634 1.91046 1.41453 1.66646 1.30613 1.43241 1.68150 1.06571 1.10517 1.18406 0.94103 0.84185 0.89379 1.22014 1.05360 0.97230 0.97077 1.21882 0.90465 0.92005 0.98675 1.22128 1.06328 1.03775 0.90825 1.18446 0.98269 0.86455 0.82518 1.91586 1.93682 1.78103 1.47807 1.66463 1.21196 1.09145 1.32354 0.93111 0.93338 0.88434 0.89912 0.89321 0.96107 0.93514 0.92819 0.71786 0.79416 0.77660 0.80342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 10.24 71.98 0.74 -3.77 16 2 C 0.10 3.58 6.18 86.38 0.53 4.11 16 3 N -0.56 -25.00 2.48 -827.83 -2.05 -27.05 16 4 C 0.24 12.91 4.79 85.63 0.41 13.32 16 5 C -0.52 -30.45 8.31 25.60 0.21 -30.24 16 6 H 0.04 2.63 7.81 -2.91 -0.02 2.61 16 7 C 0.02 1.13 5.46 84.66 0.46 1.59 16 8 N -0.92 -57.08 13.29 21.45 0.28 -56.79 16 9 Si 0.95 46.92 29.54 68.60 2.03 48.94 16 10 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 12 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 13 C 0.51 21.69 7.67 87.24 0.67 22.36 16 14 O -0.56 -22.33 15.97 -3.26 -0.05 -22.39 16 15 C 0.47 20.68 7.71 87.24 0.67 21.36 16 16 O -0.43 -23.17 10.67 -3.30 -0.04 -23.20 16 17 N -0.63 -20.63 5.38 -309.82 -1.67 -22.30 16 18 C 0.37 11.51 7.40 132.94 0.98 12.49 16 19 C -0.19 -3.42 9.94 22.50 0.22 -3.20 16 20 C -0.01 -0.07 10.16 22.43 0.23 0.16 16 21 C -0.21 -4.12 10.08 22.43 0.23 -3.89 16 22 C 0.30 9.89 8.41 84.70 0.71 10.61 16 23 F -0.13 -4.97 17.29 44.97 0.78 -4.19 16 24 N -0.57 -22.82 7.93 -194.17 -1.54 -24.36 16 25 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.08 2.90 8.11 -2.39 -0.02 2.88 16 29 H 0.09 2.95 7.24 -2.39 -0.02 2.93 16 30 H 0.02 1.15 8.02 -2.39 -0.02 1.13 16 31 H 0.05 2.82 5.41 -2.39 -0.01 2.81 16 32 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 33 H 0.44 10.80 8.18 -92.71 -0.76 10.04 16 34 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.21 0.44 8.06 -2.91 -0.02 0.41 16 36 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -81.56 321.87 4.19 -77.38 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 0.37 Total: 9.06 kcal Atomic # 6 Polarization: 38.83 SS G_CDS: 6.07 Total: 44.90 kcal Atomic # 7 Polarization: -125.53 SS G_CDS: -4.97 Total: -130.50 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -0.09 Total: -45.59 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.78 Total: -4.19 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -81.56 4.19 -77.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793034286.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.975 kcal (2) G-P(sol) polarization free energy of solvation -81.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds