Wall clock time and date at job start Tue Mar 31 2020 03:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36936 * 119.99681 * 2 1 4 4 H 1.08004 * 120.00068 * 201.71778 * 3 2 1 5 5 C 1.38815 * 120.00393 * 21.72347 * 3 2 1 6 6 N 1.31623 * 119.99584 * 13.64987 * 5 3 2 7 7 Si 1.86798 * 120.00373 * 193.65081 * 5 3 2 8 8 H 1.48501 * 109.47230 * 59.99925 * 7 5 3 9 9 H 1.48501 * 109.47217 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46957 * 299.99738 * 7 5 3 11 11 C 1.46495 * 120.00334 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.64376 * 176.85970 * 11 2 1 13 13 C 1.55152 * 110.87267 * 53.61049 * 11 2 1 14 14 C 1.55129 * 101.48642 * 205.90144 * 13 11 2 15 15 N 1.47421 * 104.72308 * 37.29389 * 14 13 11 16 16 C 1.34781 * 125.64955 * 155.81923 * 15 14 13 17 17 O 1.21277 * 120.00299 * 179.68883 * 16 15 14 18 18 C 1.50698 * 119.99771 * 359.69463 * 16 15 14 19 19 C 1.50696 * 109.47096 * 180.02562 * 18 16 15 20 20 C 1.33640 * 126.04042 * 89.99779 * 19 18 16 21 21 N 1.31786 * 114.50320 * 179.97438 * 20 19 18 22 22 C 1.29029 * 117.12157 * 359.97438 * 21 20 19 23 23 S 1.70975 * 110.16955 * 0.02562 * 22 21 20 24 24 C 1.47020 * 108.70243 * 335.55480 * 15 14 13 25 25 H 1.08998 * 109.47094 * 274.45480 * 1 2 3 26 26 H 1.09002 * 109.47449 * 34.45831 * 1 2 3 27 27 H 1.08997 * 109.47036 * 154.45806 * 1 2 3 28 28 H 0.97004 * 119.99789 * 179.97438 * 6 5 3 29 29 H 1.09006 * 111.00303 * 324.13807 * 13 11 2 30 30 H 1.09001 * 111.00959 * 87.95120 * 13 11 2 31 31 H 1.09003 * 110.49659 * 278.45212 * 14 13 11 32 32 H 1.09002 * 110.34247 * 156.05912 * 14 13 11 33 33 H 1.08997 * 109.47767 * 59.99427 * 18 16 15 34 34 H 1.09009 * 109.47162 * 299.99787 * 18 16 15 35 35 H 1.08001 * 122.74946 * 359.92635 * 20 19 18 36 36 H 1.07999 * 124.91318 * 179.97438 * 22 21 20 37 37 H 1.09001 * 109.88379 * 120.70682 * 24 15 14 38 38 H 1.09008 * 109.87885 * 241.87087 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1721 1.2192 -0.3461 5 6 1.5295 2.3454 0.4449 6 7 0.3965 2.2718 1.1108 7 14 2.3028 4.0102 0.0987 8 1 2.4196 4.2063 -1.3686 9 1 1.4512 5.0813 0.6756 10 1 3.6529 4.0665 0.7147 11 6 2.1975 -1.2686 -0.0006 12 1 3.2717 -1.0921 -0.0564 13 6 1.7291 -2.1769 -1.1680 14 6 2.0622 -3.5874 -0.6148 15 7 1.7544 -3.5076 0.8247 16 6 1.4463 -4.5503 1.6211 17 8 1.2155 -4.3675 2.7976 18 6 1.3885 -5.9436 1.0497 19 6 1.0250 -6.9188 2.1395 20 6 -0.2123 -7.2910 2.4809 21 7 -0.2683 -8.1604 3.4698 22 6 0.8530 -8.5426 3.9811 23 16 2.1562 -7.7707 3.1880 24 6 1.8455 -2.1029 1.2491 25 1 -0.3633 0.0798 1.0245 26 1 -0.3634 0.8473 -0.5815 27 1 -0.3633 -0.9272 -0.4431 28 1 -0.0367 3.0820 1.4221 29 1 0.6593 -2.0655 -1.3447 30 1 2.2964 -1.9705 -2.0756 31 1 3.1172 -3.8170 -0.7650 32 1 1.4372 -4.3402 -1.0952 33 1 2.3617 -6.2071 0.6355 34 1 0.6359 -5.9824 0.2620 35 1 -1.0942 -6.9100 1.9874 36 1 0.9537 -9.2474 4.7932 37 1 0.8887 -1.7757 1.6558 38 1 2.6274 -1.9927 2.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971735869.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:31 Heat of formation + Delta-G solvation = 23.529762 kcal Electronic energy + Delta-G solvation = -21235.379864 eV Core-core repulsion = 18012.000707 eV Total energy + Delta-G solvation = -3223.379158 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22577 -40.39905 -38.88521 -36.53626 -33.98963 -33.29857 -31.23897 -29.78842 -28.43948 -28.05084 -25.88571 -24.74788 -23.78849 -21.30135 -20.85967 -20.28732 -18.96404 -18.92151 -18.16756 -17.49495 -16.88462 -16.42142 -16.24594 -15.65158 -15.25353 -15.02625 -14.90348 -14.76597 -14.45068 -14.23817 -13.76984 -13.61611 -13.42611 -13.19173 -13.11332 -12.71680 -12.50962 -12.40453 -12.22441 -12.14913 -12.11180 -11.80304 -11.39410 -11.07689 -10.63629 -10.63042 -10.20488 -9.86784 -9.64168 -8.83768 -7.84528 -5.33461 -0.26600 0.44721 0.79680 1.47720 1.49672 1.56508 1.59834 1.78471 2.10421 2.51397 3.28026 3.42281 3.55001 3.61472 3.78232 3.86671 4.11699 4.15717 4.30024 4.37848 4.39252 4.49079 4.50634 4.72550 4.75635 4.81241 4.92153 5.06365 5.17069 5.20877 5.24759 5.33317 5.45884 5.63447 5.69457 6.29824 6.58064 6.73866 7.10882 7.14489 7.83589 8.27505 9.18605 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.035691 B = 0.003037 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.331053 B = 9216.262152 C = 9398.670600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.602 5.602 3 C -0.267 4.267 4 H 0.080 0.920 5 C -0.055 4.055 6 N -0.941 5.941 7 Si 0.972 3.028 8 H -0.274 1.274 9 H -0.299 1.299 10 H -0.275 1.275 11 C 0.164 3.836 12 H 0.083 0.917 13 C -0.141 4.141 14 C 0.103 3.897 15 N -0.612 5.612 16 C 0.517 3.483 17 O -0.591 6.591 18 C -0.048 4.048 19 C -0.212 4.212 20 C 0.025 3.975 21 N -0.504 5.504 22 C 0.013 3.987 23 S 0.152 5.848 24 C 0.099 3.901 25 H -0.009 1.009 26 H 0.020 0.980 27 H 0.034 0.966 28 H 0.247 0.753 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.179 0.821 36 H 0.228 0.772 37 H 0.030 0.970 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.329 -22.461 -4.875 23.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.323 5.323 3 C -0.397 4.397 4 H 0.098 0.902 5 C -0.250 4.250 6 N -0.587 5.587 7 Si 0.800 3.200 8 H -0.199 1.199 9 H -0.226 1.226 10 H -0.201 1.201 11 C 0.055 3.945 12 H 0.101 0.899 13 C -0.181 4.181 14 C -0.018 4.018 15 N -0.346 5.346 16 C 0.306 3.694 17 O -0.471 6.471 18 C -0.089 4.089 19 C -0.333 4.333 20 C -0.125 4.125 21 N -0.218 5.218 22 C -0.284 4.284 23 S 0.405 5.595 24 C -0.027 4.027 25 H 0.010 0.990 26 H 0.038 0.962 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.157 0.843 34 H 0.164 0.836 35 H 0.196 0.804 36 H 0.245 0.755 37 H 0.049 0.951 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.668 -22.570 -3.795 23.578 hybrid contribution -0.928 1.871 0.328 2.114 sum 4.741 -20.699 -3.467 21.516 Atomic orbital electron populations 1.20450 0.82968 0.96108 0.96938 1.44121 1.01929 1.01165 1.85090 1.19622 0.98235 0.86105 1.35727 0.90206 1.25855 0.98551 1.02141 0.98486 1.70272 1.20492 1.27521 1.40462 0.85266 0.77500 0.79142 0.78066 1.19944 1.22579 1.20098 1.21596 0.96286 0.84714 0.91897 0.89930 1.23263 1.02343 0.93668 0.98813 1.22698 1.02964 0.98291 0.77865 1.48624 1.67932 1.06100 1.11902 1.20960 0.75937 0.86959 0.85509 1.90715 1.51563 1.86186 1.18658 1.20111 1.07660 0.85597 0.95545 1.25567 0.96362 1.06138 1.05272 1.21921 0.97887 0.96922 0.95814 1.66325 1.30102 1.14331 1.11061 1.28904 0.89993 1.04519 1.04942 1.83821 1.12330 1.35744 1.27654 1.22470 0.99292 0.81429 0.99539 0.99036 0.96167 0.94742 0.94367 0.91409 0.88049 0.88347 0.86958 0.84330 0.83599 0.80393 0.75549 0.95128 0.94265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.89 7.82 127.77 1.00 9.89 16 2 N -0.60 -29.07 2.93 -696.17 -2.04 -31.11 16 3 C -0.27 -14.22 9.63 84.03 0.81 -13.41 16 4 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 5 C -0.06 -3.08 5.08 84.86 0.43 -2.65 16 6 N -0.94 -56.39 10.67 21.65 0.23 -56.16 16 7 Si 0.97 44.57 29.58 68.60 2.03 46.60 16 8 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 9 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 C 0.16 6.06 3.43 46.18 0.16 6.22 16 12 H 0.08 2.97 7.92 -2.39 -0.02 2.95 16 13 C -0.14 -3.66 6.61 32.06 0.21 -3.45 16 14 C 0.10 1.90 6.70 86.93 0.58 2.49 16 15 N -0.61 -17.46 3.32 -811.35 -2.70 -20.16 16 16 C 0.52 15.01 7.84 87.66 0.69 15.69 16 17 O -0.59 -23.72 16.36 -3.02 -0.05 -23.76 16 18 C -0.05 -0.82 5.24 29.10 0.15 -0.66 16 19 C -0.21 -4.52 5.09 24.64 0.13 -4.40 16 20 C 0.03 0.60 11.25 83.66 0.94 1.55 16 21 N -0.50 -12.53 10.54 -203.74 -2.15 -14.68 16 22 C 0.01 0.25 12.23 130.65 1.60 1.84 16 23 S 0.15 2.79 23.22 -56.49 -1.31 1.48 16 24 C 0.10 3.81 6.51 86.73 0.56 4.37 16 25 H -0.01 -0.49 7.33 -2.39 -0.02 -0.51 16 26 H 0.02 1.06 7.23 -2.39 -0.02 1.04 16 27 H 0.03 1.43 6.04 -2.39 -0.01 1.42 16 28 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.07 1.93 6.07 -2.38 -0.01 1.92 16 30 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.11 1.24 7.48 -2.39 -0.02 1.22 16 33 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.15 1.60 7.85 -2.38 -0.02 1.58 16 35 H 0.18 3.75 8.06 -2.91 -0.02 3.72 16 36 H 0.23 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.03 1.43 7.12 -2.39 -0.02 1.41 16 38 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -77.19 327.23 2.34 -74.85 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 1.07 Total: 5.45 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 7.26 Total: 17.48 kcal Atomic # 7 Polarization: -115.44 SS G_CDS: -6.66 Total: -122.10 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.05 Total: -23.76 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.31 Total: 1.48 kcal Total: -77.19 2.34 -74.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971735869.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.384 kcal (2) G-P(sol) polarization free energy of solvation -77.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds