Wall clock time and date at job start Tue Mar 31 2020 04:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38387 * 119.92725 * 2 1 4 4 C 1.38342 * 120.29827 * 180.02562 * 3 2 1 5 5 C 1.37976 * 120.14708 * 359.74697 * 4 3 2 6 6 C 1.50696 * 120.07624 * 180.27488 * 5 4 3 7 7 C 1.39583 * 119.84574 * 0.50741 * 5 4 3 8 8 C 1.47799 * 120.14555 * 179.77091 * 7 5 4 9 9 O 1.21566 * 119.99669 * 353.62427 * 8 7 5 10 10 N 1.34777 * 120.00236 * 173.62724 * 8 7 5 11 11 C 1.39122 * 119.99963 * 184.19878 * 10 8 7 12 12 C 1.39508 * 119.83880 * 141.00898 * 11 10 8 13 13 C 1.36359 * 120.16944 * 180.25288 * 12 11 10 14 14 C 1.40880 * 119.83055 * 359.50035 * 13 12 11 15 15 C 1.41133 * 120.15954 * 180.23084 * 14 13 12 16 16 H 1.08005 * 119.99505 * 200.92305 * 15 14 13 17 17 C 1.39909 * 120.00321 * 20.92687 * 15 14 13 18 18 N 1.30868 * 119.99894 * 17.25379 * 17 15 14 19 19 Si 1.86801 * 119.99884 * 197.25490 * 17 15 14 20 20 H 1.48503 * 109.47132 * 60.00319 * 19 17 15 21 21 H 1.48506 * 109.47120 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47288 * 299.99912 * 19 17 15 23 23 C 1.40881 * 119.67521 * 0.51849 * 14 13 12 24 24 C 1.36364 * 119.83089 * 359.73382 * 23 14 13 25 25 C 1.37927 * 119.92534 * 180.02562 * 2 1 3 26 26 H 1.08995 * 109.47125 * 269.97676 * 1 2 3 27 27 H 1.09003 * 109.46911 * 29.97418 * 1 2 3 28 28 H 1.09002 * 109.47120 * 149.97615 * 1 2 3 29 29 H 1.07999 * 119.84882 * 0.04844 * 3 2 1 30 30 H 1.07997 * 119.92633 * 179.97438 * 4 3 2 31 31 H 1.09001 * 109.46938 * 263.68397 * 6 5 4 32 32 H 1.09000 * 109.47228 * 23.68724 * 6 5 4 33 33 H 1.09000 * 109.46981 * 143.68750 * 6 5 4 34 34 H 0.97002 * 119.99671 * 4.19455 * 10 8 7 35 35 H 1.08004 * 119.91382 * 359.97438 * 12 11 10 36 36 H 1.08004 * 120.08114 * 179.74645 * 13 12 11 37 37 H 0.97000 * 120.00040 * 180.02562 * 18 17 15 38 38 H 1.07995 * 120.08068 * 179.71214 * 23 14 13 39 39 H 1.07994 * 119.91590 * 179.97438 * 24 23 14 40 40 H 1.08003 * 120.07317 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2083 -0.0005 5 6 4.2815 0.0197 0.0042 6 6 5.7884 0.0313 0.0099 7 6 3.5913 -1.1936 -0.0012 8 6 4.3352 -2.4707 -0.0013 9 8 5.5457 -2.4690 -0.1136 10 7 3.6716 -3.6372 0.1231 11 6 4.3772 -4.8329 0.2109 12 6 3.9408 -5.8343 1.0787 13 6 4.6302 -7.0069 1.1739 14 6 5.7799 -7.2100 0.3853 15 6 6.4959 -8.4229 0.4747 16 1 7.5262 -8.4666 0.1539 17 6 5.8710 -9.5687 0.9789 18 7 4.5654 -9.6242 1.0504 19 14 6.9002 -11.0192 1.5499 20 1 7.7978 -10.5864 2.6509 21 1 6.0055 -12.0997 2.0373 22 1 7.7154 -11.5247 0.4162 23 6 6.2147 -6.1940 -0.4884 24 6 5.5180 -5.0246 -0.5691 25 6 2.1951 -1.1954 -0.0005 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6538 2.1325 0.0008 30 1 4.1135 2.1477 -0.0009 31 1 6.1564 -0.0807 -1.0100 32 1 6.1429 0.9759 0.4224 33 1 6.1558 -0.7929 0.6213 34 1 2.7020 -3.6429 0.1515 35 1 3.0572 -5.6786 1.6799 36 1 4.2934 -7.7796 1.8492 37 1 4.1321 -10.4184 1.4003 38 1 7.0978 -6.3409 -1.0924 39 1 5.8504 -4.2447 -1.2380 40 1 1.6551 -2.1307 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008125708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:56 Heat of formation + Delta-G solvation = 3.304786 kcal Electronic energy + Delta-G solvation = -22237.175345 eV Core-core repulsion = 18981.015559 eV Total energy + Delta-G solvation = -3256.159786 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.33939 -38.69051 -37.13433 -34.71239 -33.63594 -33.07979 -31.26943 -29.59286 -29.25508 -28.69239 -25.48889 -24.79981 -23.58671 -21.83166 -21.24427 -20.32092 -19.57034 -17.44681 -17.13776 -16.39777 -15.67896 -15.40240 -15.12993 -14.88538 -14.57639 -13.99746 -13.82493 -13.58897 -13.24389 -12.91636 -12.84639 -12.69747 -12.56557 -12.14929 -11.84425 -11.72113 -11.66685 -11.59898 -11.39468 -11.14715 -11.09165 -10.93041 -10.51818 -10.05715 -9.69924 -9.41984 -9.09569 -9.00707 -8.66605 -8.51163 -7.53446 -7.04035 -6.78759 -4.31421 0.88244 1.25280 2.63768 3.03184 3.04584 3.08789 3.12661 3.30030 3.73188 3.89948 3.94036 4.59597 4.64122 4.67183 4.80927 4.99766 5.07081 5.37860 5.40181 5.41406 5.58784 5.64574 5.71766 5.87735 5.90290 5.96127 6.18315 6.21771 6.33501 6.39589 6.44310 6.62229 6.80789 6.86584 6.97718 7.02373 7.21737 7.29816 7.60062 7.76938 7.90990 8.03421 8.26754 8.30577 8.58757 8.76982 8.87052 9.00611 10.12238 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.031479 B = 0.003074 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.257411 B = 9107.481549 C = 9818.381607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.104 4.104 3 C -0.098 4.098 4 C -0.129 4.129 5 C -0.030 4.030 6 C -0.121 4.121 7 C -0.124 4.124 8 C 0.539 3.461 9 O -0.524 6.524 10 N -0.643 5.643 11 C -0.016 4.016 12 C -0.109 4.109 13 C -0.161 4.161 14 C 0.106 3.894 15 C -0.452 4.452 16 H 0.078 0.922 17 C 0.074 3.926 18 N -0.790 5.790 19 Si 0.911 3.089 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.265 1.265 23 C -0.221 4.221 24 C -0.069 4.069 25 C -0.086 4.086 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.392 0.608 35 H 0.089 0.911 36 H 0.129 0.871 37 H 0.281 0.719 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.618 15.562 -0.408 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.104 4.104 3 C -0.117 4.117 4 C -0.147 4.147 5 C -0.031 4.031 6 C -0.177 4.177 7 C -0.128 4.128 8 C 0.328 3.672 9 O -0.403 6.403 10 N -0.286 5.286 11 C -0.108 4.108 12 C -0.129 4.129 13 C -0.181 4.181 14 C 0.103 3.897 15 C -0.481 4.481 16 H 0.096 0.904 17 C -0.144 4.144 18 N -0.416 5.416 19 Si 0.735 3.265 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.189 1.189 23 C -0.241 4.241 24 C -0.089 4.089 25 C -0.105 4.105 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.227 0.773 35 H 0.107 0.893 36 H 0.146 0.854 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.958 15.381 -0.417 16.887 hybrid contribution -0.275 -0.671 0.251 0.767 sum -7.233 14.710 -0.165 16.393 Atomic orbital electron populations 1.20777 0.90907 1.02845 1.02390 1.19799 0.96207 0.92879 1.01546 1.21156 0.94167 0.97468 0.98860 1.21020 0.94035 0.97500 1.02164 1.20068 0.96993 0.91416 0.94655 1.21085 0.90024 1.02866 1.03739 1.19964 0.93439 0.93715 1.05647 1.18231 0.87364 0.83393 0.78254 1.90705 1.13581 1.86690 1.49283 1.42875 1.09137 1.05136 1.71463 1.17120 1.00050 0.86847 1.06751 1.20273 0.99906 0.94747 0.97956 1.21074 0.98363 0.96367 1.02263 1.17682 0.91396 0.91985 0.88643 1.19586 0.99119 0.93366 1.36062 0.90356 1.25964 0.94959 1.00316 0.93175 1.69820 1.09564 1.29074 1.33114 0.86325 0.80418 0.79641 0.80120 1.18764 1.20297 1.18933 1.20634 1.03179 0.95891 1.04443 1.20287 0.94855 0.96410 0.97353 1.21207 0.92933 0.98012 0.98324 0.91158 0.91581 0.91394 0.85907 0.85584 0.90764 0.92813 0.88305 0.77299 0.89282 0.85358 0.90765 0.88761 0.87987 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 2 C -0.10 -1.09 5.87 -104.68 -0.61 -1.70 16 3 C -0.10 -0.98 9.69 -39.49 -0.38 -1.36 16 4 C -0.13 -1.43 9.66 -39.64 -0.38 -1.81 16 5 C -0.03 -0.42 5.91 -104.22 -0.62 -1.03 16 6 C -0.12 -1.66 8.73 36.00 0.31 -1.35 16 7 C -0.12 -1.87 5.87 -104.97 -0.62 -2.48 16 8 C 0.54 9.99 7.51 -12.35 -0.09 9.90 16 9 O -0.52 -11.21 11.01 5.31 0.06 -11.15 16 10 N -0.64 -11.92 5.24 -10.61 -0.06 -11.98 16 11 C -0.02 -0.35 6.23 -83.60 -0.52 -0.88 16 12 C -0.11 -2.53 9.90 -39.79 -0.39 -2.92 16 13 C -0.16 -4.16 8.68 -39.26 -0.34 -4.50 16 14 C 0.11 2.84 5.62 -106.80 -0.60 2.24 16 15 C -0.45 -11.99 9.05 -37.86 -0.34 -12.33 16 16 H 0.08 2.00 7.90 -52.48 -0.41 1.58 16 17 C 0.07 1.83 5.19 -17.34 -0.09 1.74 16 18 N -0.79 -19.98 10.68 55.55 0.59 -19.39 16 19 Si 0.91 18.47 29.59 -169.99 -5.03 13.44 16 20 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 23 C -0.22 -5.67 9.74 -39.26 -0.38 -6.05 16 24 C -0.07 -1.68 8.59 -39.78 -0.34 -2.03 16 25 C -0.09 -1.06 9.18 -39.18 -0.36 -1.42 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.59 8.04 -51.93 -0.42 0.17 16 33 H 0.10 1.63 5.86 -51.93 -0.30 1.33 16 34 H 0.39 5.91 6.88 -40.82 -0.28 5.63 16 35 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 36 H 0.13 3.39 5.85 -52.48 -0.31 3.08 16 37 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 38 H 0.09 2.29 8.06 -52.49 -0.42 1.87 16 39 H 0.10 2.44 6.51 -52.49 -0.34 2.10 16 40 H 0.13 1.32 6.43 -52.48 -0.34 0.99 16 LS Contribution 333.75 15.07 5.03 5.03 Total: -1.00 -29.56 333.75 -9.72 -39.28 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -4.91 Total: 11.23 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -5.40 Total: -26.46 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: 0.54 Total: -31.36 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.06 Total: -11.15 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.56 -9.72 -39.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008125708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.588 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds