Wall clock time and date at job start Tue Mar 31 2020 04:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38387 * 119.92725 * 2 1 4 4 C 1.38342 * 120.29827 * 180.02562 * 3 2 1 5 5 C 1.37976 * 120.14708 * 359.74697 * 4 3 2 6 6 C 1.50696 * 120.07624 * 180.27488 * 5 4 3 7 7 C 1.39583 * 119.84574 * 0.50741 * 5 4 3 8 8 C 1.47799 * 120.14555 * 179.77091 * 7 5 4 9 9 O 1.21566 * 119.99669 * 353.62427 * 8 7 5 10 10 N 1.34777 * 120.00236 * 173.62724 * 8 7 5 11 11 C 1.39122 * 119.99963 * 184.19878 * 10 8 7 12 12 C 1.39508 * 119.83880 * 141.00898 * 11 10 8 13 13 C 1.36359 * 120.16944 * 180.25288 * 12 11 10 14 14 C 1.40880 * 119.83055 * 359.50035 * 13 12 11 15 15 C 1.41133 * 120.15954 * 180.23084 * 14 13 12 16 16 H 1.08005 * 119.99505 * 200.92305 * 15 14 13 17 17 C 1.39909 * 120.00321 * 20.92687 * 15 14 13 18 18 N 1.30868 * 119.99894 * 17.25379 * 17 15 14 19 19 Si 1.86801 * 119.99884 * 197.25490 * 17 15 14 20 20 H 1.48503 * 109.47132 * 60.00319 * 19 17 15 21 21 H 1.48506 * 109.47120 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47288 * 299.99912 * 19 17 15 23 23 C 1.40881 * 119.67521 * 0.51849 * 14 13 12 24 24 C 1.36364 * 119.83089 * 359.73382 * 23 14 13 25 25 C 1.37927 * 119.92534 * 180.02562 * 2 1 3 26 26 H 1.08995 * 109.47125 * 269.97676 * 1 2 3 27 27 H 1.09003 * 109.46911 * 29.97418 * 1 2 3 28 28 H 1.09002 * 109.47120 * 149.97615 * 1 2 3 29 29 H 1.07999 * 119.84882 * 0.04844 * 3 2 1 30 30 H 1.07997 * 119.92633 * 179.97438 * 4 3 2 31 31 H 1.09001 * 109.46938 * 263.68397 * 6 5 4 32 32 H 1.09000 * 109.47228 * 23.68724 * 6 5 4 33 33 H 1.09000 * 109.46981 * 143.68750 * 6 5 4 34 34 H 0.97002 * 119.99671 * 4.19455 * 10 8 7 35 35 H 1.08004 * 119.91382 * 359.97438 * 12 11 10 36 36 H 1.08004 * 120.08114 * 179.74645 * 13 12 11 37 37 H 0.97000 * 120.00040 * 180.02562 * 18 17 15 38 38 H 1.07995 * 120.08068 * 179.71214 * 23 14 13 39 39 H 1.07994 * 119.91590 * 179.97438 * 24 23 14 40 40 H 1.08003 * 120.07317 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2083 -0.0005 5 6 4.2815 0.0197 0.0042 6 6 5.7884 0.0313 0.0099 7 6 3.5913 -1.1936 -0.0012 8 6 4.3352 -2.4707 -0.0013 9 8 5.5457 -2.4690 -0.1136 10 7 3.6716 -3.6372 0.1231 11 6 4.3772 -4.8329 0.2109 12 6 3.9408 -5.8343 1.0787 13 6 4.6302 -7.0069 1.1739 14 6 5.7799 -7.2100 0.3853 15 6 6.4959 -8.4229 0.4747 16 1 7.5262 -8.4666 0.1539 17 6 5.8710 -9.5687 0.9789 18 7 4.5654 -9.6242 1.0504 19 14 6.9002 -11.0192 1.5499 20 1 7.7978 -10.5864 2.6509 21 1 6.0055 -12.0997 2.0373 22 1 7.7154 -11.5247 0.4162 23 6 6.2147 -6.1940 -0.4884 24 6 5.5180 -5.0246 -0.5691 25 6 2.1951 -1.1954 -0.0005 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6538 2.1325 0.0008 30 1 4.1135 2.1477 -0.0009 31 1 6.1564 -0.0807 -1.0100 32 1 6.1429 0.9759 0.4224 33 1 6.1558 -0.7929 0.6213 34 1 2.7020 -3.6429 0.1515 35 1 3.0572 -5.6786 1.6799 36 1 4.2934 -7.7796 1.8492 37 1 4.1321 -10.4184 1.4003 38 1 7.0978 -6.3409 -1.0924 39 1 5.8504 -4.2447 -1.2380 40 1 1.6551 -2.1307 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008125708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:55 Heat of formation + Delta-G solvation = -11.462760 kcal Electronic energy + Delta-G solvation = -22237.815714 eV Core-core repulsion = 18981.015559 eV Total energy + Delta-G solvation = -3256.800155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.63858 -40.00930 -38.82629 -36.36114 -34.96616 -34.48617 -32.42202 -31.46289 -30.64185 -29.99827 -27.06663 -25.90061 -24.74655 -23.40067 -22.87293 -21.75892 -21.01497 -19.32129 -18.52785 -17.95940 -17.07769 -16.59017 -16.34051 -16.22101 -15.87620 -15.70635 -15.07473 -14.80960 -14.50446 -14.39766 -14.02655 -14.01221 -13.74349 -13.64353 -13.37811 -13.29110 -12.86603 -12.77458 -12.61711 -12.51325 -12.45351 -12.34618 -11.99104 -11.83490 -11.55546 -11.23473 -10.70281 -10.35141 -9.96831 -9.49143 -9.45446 -8.91924 -8.65055 -6.29314 -0.14251 0.37020 0.84782 1.14050 1.38761 1.48730 1.52334 1.93313 2.20353 2.31716 2.69129 2.85788 3.66618 3.73753 3.84691 3.87960 4.07609 4.29511 4.36905 4.44502 4.49579 4.64684 4.74153 4.80556 4.85573 4.90661 4.91752 4.97323 5.09271 5.12480 5.22347 5.29976 5.32673 5.37114 5.44741 5.58003 5.61670 5.65041 5.91313 5.99277 6.02314 6.10490 6.33768 6.62825 6.69319 6.90456 6.96819 7.35555 8.28529 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.031479 B = 0.003074 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.257411 B = 9107.481549 C = 9818.381607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.103 4.103 3 C -0.087 4.087 4 C -0.127 4.127 5 C -0.050 4.050 6 C -0.116 4.116 7 C -0.151 4.151 8 C 0.537 3.463 9 O -0.560 6.560 10 N -0.640 5.640 11 C -0.003 4.003 12 C -0.108 4.108 13 C -0.179 4.179 14 C 0.076 3.924 15 C -0.491 4.491 16 H 0.074 0.926 17 C 0.036 3.964 18 N -0.816 5.816 19 Si 0.985 3.015 20 H -0.262 1.262 21 H -0.263 1.263 22 H -0.260 1.260 23 C -0.240 4.240 24 C -0.080 4.080 25 C -0.091 4.091 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.160 0.840 30 H 0.153 0.847 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.411 0.589 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.291 0.709 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.834 17.435 0.139 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C -0.105 4.105 4 C -0.145 4.145 5 C -0.051 4.051 6 C -0.172 4.172 7 C -0.154 4.154 8 C 0.328 3.672 9 O -0.441 6.441 10 N -0.285 5.285 11 C -0.096 4.096 12 C -0.128 4.128 13 C -0.199 4.199 14 C 0.073 3.927 15 C -0.520 4.520 16 H 0.092 0.908 17 C -0.180 4.180 18 N -0.441 5.441 19 Si 0.805 3.195 20 H -0.187 1.187 21 H -0.187 1.187 22 H -0.185 1.185 23 C -0.260 4.260 24 C -0.100 4.100 25 C -0.109 4.109 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.177 0.823 30 H 0.171 0.829 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.249 0.751 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.217 17.283 0.122 19.588 hybrid contribution 0.301 -1.025 0.047 1.070 sum -8.916 16.258 0.168 18.543 Atomic orbital electron populations 1.20851 0.88518 1.04052 1.03409 1.20199 0.97914 0.92273 0.99931 1.21635 0.93833 0.98801 0.96266 1.21320 0.94805 0.97311 1.01020 1.20214 0.96826 0.92232 0.95855 1.20959 0.90789 1.02866 1.02602 1.19759 0.94528 0.91979 1.09163 1.18907 0.87221 0.84429 0.76674 1.90695 1.15405 1.87353 1.50642 1.42784 1.09966 1.03938 1.71793 1.17184 0.99294 0.88066 1.05066 1.20522 1.00495 0.93862 0.97876 1.21094 0.98874 0.97320 1.02651 1.18003 0.92405 0.92733 0.89512 1.19813 0.99295 0.94457 1.38408 0.90763 1.26790 0.96110 1.02640 0.92459 1.69846 1.10896 1.30350 1.33026 0.85209 0.78698 0.76071 0.79480 1.18660 1.18684 1.18465 1.20761 1.03756 0.96522 1.04932 1.20385 0.95720 0.95948 0.97944 1.21392 0.91771 0.99674 0.98087 0.90094 0.89700 0.91001 0.82287 0.82906 0.91774 0.90068 0.91736 0.75145 0.86153 0.86217 0.89785 0.88790 0.88158 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 71.24 0.71 -0.50 16 2 C -0.10 -1.78 5.87 -19.90 -0.12 -1.90 16 3 C -0.09 -1.36 9.69 22.33 0.22 -1.14 16 4 C -0.13 -2.39 9.66 22.23 0.21 -2.18 16 5 C -0.05 -1.33 5.91 -19.60 -0.12 -1.45 16 6 C -0.12 -3.22 8.73 71.23 0.62 -2.60 16 7 C -0.15 -4.44 5.87 -20.09 -0.12 -4.56 16 8 C 0.54 20.27 7.51 86.77 0.65 20.92 16 9 O -0.56 -25.07 11.01 -3.92 -0.04 -25.12 16 10 N -0.64 -23.71 5.24 -305.74 -1.60 -25.31 16 11 C 0.00 -0.13 6.23 38.60 0.24 0.11 16 12 C -0.11 -5.04 9.90 22.14 0.22 -4.82 16 13 C -0.18 -9.56 8.68 22.48 0.20 -9.37 16 14 C 0.08 4.28 5.62 -21.28 -0.12 4.16 16 15 C -0.49 -27.11 9.05 23.39 0.21 -26.90 16 16 H 0.07 3.98 7.90 -2.91 -0.02 3.96 16 17 C 0.04 1.80 5.19 85.24 0.44 2.24 16 18 N -0.82 -41.86 10.68 21.82 0.23 -41.62 16 19 Si 0.99 38.09 29.59 68.60 2.03 40.12 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 22 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 23 C -0.24 -12.93 9.74 22.48 0.22 -12.71 16 24 C -0.08 -4.06 8.59 22.14 0.19 -3.87 16 25 C -0.09 -2.04 9.18 22.53 0.21 -1.83 16 26 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 28 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 29 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 30 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.08 1.71 8.04 -2.39 -0.02 1.69 16 33 H 0.06 2.25 5.86 -2.39 -0.01 2.24 16 34 H 0.41 11.96 6.88 -92.71 -0.64 11.32 16 35 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 36 H 0.12 6.51 5.85 -2.91 -0.02 6.50 16 37 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 38 H 0.09 4.88 8.06 -2.91 -0.02 4.85 16 39 H 0.10 5.05 6.51 -2.91 -0.02 5.03 16 40 H 0.14 2.60 6.43 -2.91 -0.02 2.59 16 Total: -1.00 -67.62 333.75 4.92 -62.70 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: 0.43 Total: 35.61 kcal Atomic # 6 Polarization: -50.25 SS G_CDS: 3.87 Total: -46.38 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: -1.37 Total: -66.93 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.04 Total: -25.12 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Total: -67.62 4.92 -62.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008125708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.236 kcal (2) G-P(sol) polarization free energy of solvation -67.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds