Wall clock time and date at job start Tue Mar 31 2020 04:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99601 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99458 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99799 * 3 2 1 7 7 C 1.37876 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00433 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99760 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46781 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46681 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99854 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99953 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00124 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00065 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.47198 * 180.02562 * 15 14 12 17 17 N 1.46499 * 109.47198 * 179.97438 * 16 15 14 18 18 C 1.34777 * 119.99665 * 180.27868 * 17 16 15 19 19 O 1.21623 * 120.00244 * 359.72094 * 18 17 16 20 20 C 1.47160 * 119.99509 * 179.72415 * 18 17 16 21 21 C 1.38408 * 126.88242 * 179.97438 * 20 18 17 22 22 C 1.39669 * 105.36209 * 180.02562 * 21 20 18 23 23 N 1.30871 * 107.86139 * 359.97438 * 22 21 20 24 24 N 1.28442 * 110.92466 * 359.71616 * 23 22 21 25 25 H 0.96999 * 125.18915 * 180.27844 * 24 23 22 26 26 H 0.96996 * 120.00389 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46965 * 59.99652 * 9 7 2 28 28 H 1.08997 * 109.46944 * 299.99612 * 9 7 2 29 29 H 1.09000 * 109.46919 * 60.00727 * 10 9 7 30 30 H 1.08997 * 109.47540 * 299.99829 * 10 9 7 31 31 H 0.97000 * 120.00410 * 0.02562 * 11 10 9 32 32 H 0.97000 * 119.99549 * 0.02562 * 14 12 11 33 33 H 1.08995 * 109.47424 * 60.00473 * 15 14 12 34 34 H 1.09006 * 109.46868 * 300.00024 * 15 14 12 35 35 H 1.09009 * 109.46730 * 59.99787 * 16 15 14 36 36 H 1.08998 * 109.46846 * 300.00332 * 16 15 14 37 37 H 0.97001 * 119.99790 * 359.97438 * 17 16 15 38 38 H 1.08004 * 127.31968 * 359.97438 * 21 20 18 39 39 H 1.08004 * 126.07500 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0979 0.0007 13 8 3.4027 -6.0979 0.0003 14 7 1.5130 -7.2652 0.0008 15 6 2.2455 -8.5339 0.0009 16 6 1.2513 -9.6969 0.0003 17 7 1.9838 -10.9656 -0.0002 18 6 1.3099 -12.1327 -0.0065 19 8 0.0937 -12.1328 -0.0066 20 6 2.0458 -13.4071 -0.0131 21 6 1.5025 -14.6801 -0.0194 22 6 2.5959 -15.5491 -0.0235 23 7 3.6852 -14.8236 -0.0203 24 7 3.4020 -13.5708 -0.0205 25 1 4.0519 -12.8508 -0.0224 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6242 -2.5567 0.8903 29 1 2.8719 -3.6042 0.8906 30 1 2.8720 -3.6043 -0.8894 31 1 0.5429 -4.9308 0.0011 32 1 0.5429 -7.2651 0.0007 33 1 2.8720 -8.5916 0.8909 34 1 2.8722 -8.5916 -0.8891 35 1 0.6250 -9.6389 -0.8900 36 1 0.6242 -9.6392 0.8900 37 1 2.9538 -10.9655 -0.0005 38 1 0.4555 -14.9451 -0.0201 39 1 2.5507 -16.6281 -0.0292 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273471664.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:32 Heat of formation + Delta-G solvation = -0.083699 kcal Electronic energy + Delta-G solvation = -21724.927259 eV Core-core repulsion = 18090.064025 eV Total energy + Delta-G solvation = -3634.863234 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.02886 -40.07027 -39.56852 -36.39519 -34.92238 -34.19983 -32.86343 -32.24073 -31.54053 -30.01005 -28.58483 -25.01249 -24.10224 -22.93724 -22.19351 -21.34058 -21.02685 -20.62538 -19.59861 -18.17850 -16.68442 -16.55176 -16.38495 -16.25978 -15.94392 -15.67361 -15.14703 -14.95324 -14.52173 -14.27546 -14.16959 -14.06744 -13.70976 -13.52360 -13.22309 -12.30625 -12.19637 -12.17808 -11.52014 -11.22028 -11.05353 -10.71063 -10.65426 -10.35741 -10.07146 -10.00451 -9.85126 -9.60381 -9.58149 -9.29503 -9.20867 -8.52488 -8.32282 -6.11157 -4.14028 0.69752 2.09639 2.16628 2.28759 2.67981 3.09061 3.28304 3.34659 3.38995 3.46614 4.02609 4.20351 4.30646 4.37562 4.62087 4.65920 4.67757 4.97816 5.03485 5.26042 5.35067 5.46133 5.47780 5.66933 5.92810 6.22906 6.31425 6.34951 6.38289 6.72864 6.74931 6.91708 7.10178 7.37781 7.50716 7.53085 7.60060 7.87568 8.21176 8.33634 8.85308 8.92807 9.50897 11.00430 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.059734 B = 0.001779 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.630357 B =15735.894968 C =16173.447126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.140 3.860 11 N -0.736 5.736 12 C 0.701 3.299 13 O -0.597 6.597 14 N -0.751 5.751 15 C 0.130 3.870 16 C 0.109 3.891 17 N -0.724 5.724 18 C 0.594 3.406 19 O -0.515 6.515 20 C -0.042 4.042 21 C -0.150 4.150 22 C -0.001 4.001 23 N -0.268 5.268 24 N -0.378 5.378 25 H 0.445 0.555 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.023 0.977 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.395 0.605 32 H 0.398 0.602 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.399 0.601 38 H 0.167 0.833 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.278 -28.798 -0.033 28.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.389 5.389 12 C 0.400 3.600 13 O -0.476 6.476 14 N -0.410 5.410 15 C 0.005 3.995 16 C -0.015 4.015 17 N -0.376 5.376 18 C 0.379 3.621 19 O -0.388 6.388 20 C -0.170 4.170 21 C -0.179 4.179 22 C -0.178 4.178 23 N -0.101 5.101 24 N -0.095 5.095 25 H 0.289 0.711 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.228 0.772 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.233 0.767 38 H 0.184 0.816 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.490 -28.689 -0.025 28.900 hybrid contribution -0.558 1.360 -0.013 1.470 sum 2.932 -27.329 -0.038 27.486 Atomic orbital electron populations 1.69951 1.06088 1.26892 1.50344 1.24995 0.94896 0.99416 0.94973 0.86505 0.79832 0.82975 0.78196 1.20564 1.21171 1.19728 1.21045 0.93271 0.90340 1.51398 0.92207 1.19338 0.94265 0.91066 0.97880 1.21622 0.95671 0.80291 1.00713 1.45540 1.09978 1.05251 1.78178 1.15989 0.85572 0.80379 0.78030 1.90898 1.11731 1.86620 1.58370 1.44844 1.09623 1.04244 1.82246 1.21117 0.93877 0.81473 1.03061 1.21539 0.94764 0.81256 1.03958 1.45634 1.10241 1.05659 1.76085 1.16915 0.86840 0.81616 0.76769 1.90882 1.12363 1.86589 1.48975 1.21726 0.84644 0.96286 1.14345 1.22279 1.01303 0.89662 1.04705 1.23735 0.87689 1.00877 1.05495 1.73221 1.28208 0.89853 1.18803 1.43717 1.05697 1.06532 1.53585 0.71074 0.92838 0.95924 0.95900 0.92703 0.92701 0.77228 0.76830 0.91052 0.91065 0.90050 0.90033 0.76723 0.81551 0.79228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C 0.14 2.93 5.61 -4.04 -0.02 2.90 16 11 N -0.74 -12.42 5.56 -65.22 -0.36 -12.78 16 12 C 0.70 11.44 8.57 -86.92 -0.74 10.69 16 13 O -0.60 -12.13 16.34 5.28 0.09 -12.05 16 14 N -0.75 -8.24 5.56 -65.22 -0.36 -8.60 16 15 C 0.13 1.11 5.79 -4.04 -0.02 1.09 16 16 C 0.11 0.74 5.79 -4.04 -0.02 0.72 16 17 N -0.72 -4.32 5.55 -61.47 -0.34 -4.66 16 18 C 0.59 5.03 7.80 -12.64 -0.10 4.93 16 19 O -0.51 -6.23 16.92 5.26 0.09 -6.14 16 20 C -0.04 -0.31 7.16 -82.06 -0.59 -0.89 16 21 C -0.15 -1.07 10.85 -38.98 -0.42 -1.49 16 22 C 0.00 0.00 12.03 -17.43 -0.21 -0.21 16 23 N -0.27 -1.98 12.14 30.59 0.37 -1.61 16 24 N -0.38 -2.17 6.85 33.48 0.23 -1.94 16 25 H 0.44 1.13 8.22 -190.46 -1.57 -0.44 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.39 5.65 8.49 -40.82 -0.35 5.30 16 32 H 0.40 3.30 8.49 -40.82 -0.35 2.96 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.40 1.29 7.66 -40.82 -0.31 0.97 16 38 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.19 0.60 8.06 -52.48 -0.42 0.18 16 LS Contribution 346.48 15.07 5.22 5.22 Total: -1.00 -36.49 346.48 -8.38 -44.87 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.34 Total: 1.84 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -2.69 Total: 4.80 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.27 Total: -54.72 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.18 Total: -18.19 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.49 -8.38 -44.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273471664.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.783 kcal (2) G-P(sol) polarization free energy of solvation -36.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds