Wall clock time and date at job start Tue Mar 31 2020 04:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99601 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99458 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99799 * 3 2 1 7 7 C 1.37876 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00433 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99760 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46781 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46681 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99854 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99953 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00124 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00065 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.47198 * 180.02562 * 15 14 12 17 17 N 1.46499 * 109.47198 * 179.97438 * 16 15 14 18 18 C 1.34777 * 119.99665 * 180.27868 * 17 16 15 19 19 O 1.21623 * 120.00244 * 359.72094 * 18 17 16 20 20 C 1.47160 * 119.99509 * 179.72415 * 18 17 16 21 21 C 1.38408 * 126.88242 * 179.97438 * 20 18 17 22 22 C 1.39669 * 105.36209 * 180.02562 * 21 20 18 23 23 N 1.30871 * 107.86139 * 359.97438 * 22 21 20 24 24 N 1.28442 * 110.92466 * 359.71616 * 23 22 21 25 25 H 0.96999 * 125.18915 * 180.27844 * 24 23 22 26 26 H 0.96996 * 120.00389 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46965 * 59.99652 * 9 7 2 28 28 H 1.08997 * 109.46944 * 299.99612 * 9 7 2 29 29 H 1.09000 * 109.46919 * 60.00727 * 10 9 7 30 30 H 1.08997 * 109.47540 * 299.99829 * 10 9 7 31 31 H 0.97000 * 120.00410 * 0.02562 * 11 10 9 32 32 H 0.97000 * 119.99549 * 0.02562 * 14 12 11 33 33 H 1.08995 * 109.47424 * 60.00473 * 15 14 12 34 34 H 1.09006 * 109.46868 * 300.00024 * 15 14 12 35 35 H 1.09009 * 109.46730 * 59.99787 * 16 15 14 36 36 H 1.08998 * 109.46846 * 300.00332 * 16 15 14 37 37 H 0.97001 * 119.99790 * 359.97438 * 17 16 15 38 38 H 1.08004 * 127.31968 * 359.97438 * 21 20 18 39 39 H 1.08004 * 126.07500 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0979 0.0007 13 8 3.4027 -6.0979 0.0003 14 7 1.5130 -7.2652 0.0008 15 6 2.2455 -8.5339 0.0009 16 6 1.2513 -9.6969 0.0003 17 7 1.9838 -10.9656 -0.0002 18 6 1.3099 -12.1327 -0.0065 19 8 0.0937 -12.1328 -0.0066 20 6 2.0458 -13.4071 -0.0131 21 6 1.5025 -14.6801 -0.0194 22 6 2.5959 -15.5491 -0.0235 23 7 3.6852 -14.8236 -0.0203 24 7 3.4020 -13.5708 -0.0205 25 1 4.0519 -12.8508 -0.0224 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6242 -2.5567 0.8903 29 1 2.8719 -3.6042 0.8906 30 1 2.8720 -3.6043 -0.8894 31 1 0.5429 -4.9308 0.0011 32 1 0.5429 -7.2651 0.0007 33 1 2.8720 -8.5916 0.8909 34 1 2.8722 -8.5916 -0.8891 35 1 0.6250 -9.6389 -0.8900 36 1 0.6242 -9.6392 0.8900 37 1 2.9538 -10.9655 -0.0005 38 1 0.4555 -14.9451 -0.0201 39 1 2.5507 -16.6281 -0.0292 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273471664.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:32 Heat of formation + Delta-G solvation = -30.593089 kcal Electronic energy + Delta-G solvation = -21726.250246 eV Core-core repulsion = 18090.064025 eV Total energy + Delta-G solvation = -3636.186220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.52722 -41.07811 -40.53478 -37.32044 -36.45810 -35.19596 -34.76499 -32.77676 -32.18645 -31.53339 -29.63590 -26.69516 -25.00726 -23.62218 -22.89111 -22.70966 -22.07792 -21.65235 -20.21146 -19.44135 -18.42601 -17.43583 -17.24463 -16.89944 -16.79796 -16.76656 -16.46839 -16.14052 -15.54277 -15.31527 -15.26855 -15.04163 -14.65342 -14.64543 -14.26416 -14.16334 -13.20287 -13.07441 -12.89611 -12.87617 -12.51479 -12.21460 -12.08223 -11.68851 -11.51921 -11.39838 -11.21945 -10.59827 -10.55332 -10.42528 -10.36059 -10.11332 -9.74384 -8.23079 -6.33200 0.12734 1.39515 1.43255 1.44133 1.55001 1.59983 1.82365 2.07153 2.14017 2.14667 2.42796 3.11985 3.38932 3.53196 3.63769 3.78569 4.00959 4.21406 4.36567 4.48476 4.51287 4.53969 4.80494 4.80602 4.88518 4.92310 5.05633 5.31662 5.42224 5.46864 5.52253 5.61146 5.79772 5.90560 6.01260 6.18156 6.24976 6.80279 6.84743 6.95682 7.09991 7.36204 7.57172 8.88666 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.059734 B = 0.001779 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.630357 B =15735.894968 C =16173.447126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.022 3.978 10 C 0.161 3.839 11 N -0.733 5.733 12 C 0.700 3.300 13 O -0.638 6.638 14 N -0.732 5.732 15 C 0.133 3.867 16 C 0.119 3.881 17 N -0.710 5.710 18 C 0.597 3.403 19 O -0.556 6.556 20 C -0.051 4.051 21 C -0.162 4.162 22 C -0.001 4.001 23 N -0.286 5.286 24 N -0.367 5.367 25 H 0.456 0.544 26 H 0.265 0.735 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.408 0.592 32 H 0.414 0.586 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.414 0.586 38 H 0.172 0.828 39 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.895 -29.528 -0.043 29.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.036 3.964 11 N -0.388 5.388 12 C 0.400 3.600 13 O -0.519 6.519 14 N -0.390 5.390 15 C 0.008 3.992 16 C -0.005 4.005 17 N -0.363 5.363 18 C 0.383 3.617 19 O -0.432 6.432 20 C -0.180 4.180 21 C -0.192 4.192 22 C -0.177 4.177 23 N -0.120 5.120 24 N -0.086 5.086 25 H 0.304 0.696 26 H 0.074 0.926 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.243 0.757 32 H 0.250 0.750 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.250 0.750 38 H 0.189 0.811 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 4.111 -29.453 -0.037 29.739 hybrid contribution -0.756 1.508 -0.010 1.687 sum 3.355 -27.946 -0.047 28.146 Atomic orbital electron populations 1.70053 1.07512 1.27949 1.51053 1.25857 0.95783 1.03051 0.94461 0.85452 0.78637 0.78514 0.78481 1.19819 1.20617 1.19051 1.21477 0.93644 0.91919 1.51456 0.92227 1.19149 0.94306 0.91704 0.96430 1.21072 0.94575 0.81033 0.99700 1.45218 1.10503 1.04448 1.78597 1.16063 0.85077 0.81153 0.77707 1.90872 1.13607 1.87300 1.60160 1.44652 1.10507 1.03432 1.80366 1.21202 0.94086 0.80633 1.03241 1.21381 0.94202 0.80750 1.04162 1.45484 1.11032 1.04821 1.74915 1.17013 0.86357 0.82271 0.76086 1.90861 1.14044 1.87161 1.51147 1.21628 0.85314 0.95933 1.15149 1.22529 1.01977 0.89919 1.04756 1.24203 0.86930 1.02118 1.04469 1.73211 1.28845 0.90446 1.19457 1.43721 1.05398 1.06602 1.52840 0.69623 0.92594 0.97253 0.97230 0.93735 0.93709 0.75671 0.74967 0.90902 0.90911 0.89902 0.89883 0.74982 0.81072 0.76625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.76 13.29 21.45 0.28 -53.48 16 2 C 0.01 0.40 5.46 84.65 0.46 0.87 16 3 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.55 -30.17 9.11 25.60 0.23 -29.94 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.02 1.07 5.09 29.85 0.15 1.22 16 10 C 0.16 6.76 5.61 86.38 0.48 7.24 16 11 N -0.73 -24.27 5.56 -478.53 -2.66 -26.93 16 12 C 0.70 22.14 8.57 179.05 1.53 23.67 16 13 O -0.64 -25.50 16.34 -4.01 -0.07 -25.57 16 14 N -0.73 -14.75 5.56 -478.52 -2.66 -17.41 16 15 C 0.13 2.03 5.79 86.38 0.50 2.53 16 16 C 0.12 1.41 5.79 86.38 0.50 1.91 16 17 N -0.71 -7.32 5.55 -466.63 -2.59 -9.91 16 18 C 0.60 9.53 7.80 86.59 0.68 10.21 16 19 O -0.56 -13.20 16.92 -4.10 -0.07 -13.27 16 20 C -0.05 -0.70 7.16 40.79 0.29 -0.41 16 21 C -0.16 -2.16 10.85 22.66 0.25 -1.91 16 22 C 0.00 -0.01 12.03 85.18 1.02 1.02 16 23 N -0.29 -3.81 12.14 -57.14 -0.69 -4.50 16 24 N -0.37 -3.70 6.85 -47.99 -0.33 -4.03 16 25 H 0.46 1.59 8.22 -220.01 -1.81 -0.22 16 26 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 27 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 29 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.41 11.30 8.49 -92.71 -0.79 10.52 16 32 H 0.41 5.97 8.49 -92.71 -0.79 5.18 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.41 1.86 7.66 -92.71 -0.71 1.15 16 38 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.22 0.93 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -77.89 346.48 -3.62 -81.51 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -2.97 Total: 11.97 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 6.10 Total: 16.40 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -8.65 Total: -116.26 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -0.13 Total: -38.84 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -77.89 -3.62 -81.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273471664.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.915 kcal (2) G-P(sol) polarization free energy of solvation -77.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds