Wall clock time and date at job start Tue Mar 31 2020 04:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 O 1.20928 * 124.56811 * 2 1 4 4 C 1.34169 * 112.19051 * 180.22450 * 3 2 1 5 5 C 1.48201 * 126.38443 * 179.78156 * 4 3 2 6 6 O 1.21497 * 120.00212 * 186.07990 * 5 4 3 7 7 N 1.34781 * 120.00196 * 6.08042 * 5 4 3 8 8 C 1.48215 * 119.97356 * 175.55580 * 7 5 4 9 9 C 1.47609 * 110.03437 * 102.55009 * 8 7 5 10 10 C 1.53798 * 111.84069 * 58.44200 * 9 8 7 11 11 N 1.43464 * 107.95779 * 281.53571 * 10 9 8 12 12 C 1.36940 * 118.94279 * 273.63350 * 11 10 9 13 13 H 1.07997 * 119.99781 * 140.24062 * 12 11 10 14 14 C 1.38803 * 119.99873 * 320.24574 * 12 11 10 15 15 N 1.31625 * 120.00196 * 159.85606 * 14 12 11 16 16 Si 1.86801 * 120.00015 * 339.85458 * 14 12 11 17 17 H 1.48492 * 109.47226 * 95.28907 * 16 14 12 18 18 H 1.48508 * 109.47245 * 215.28874 * 16 14 12 19 19 H 1.48498 * 109.47156 * 335.28623 * 16 14 12 20 20 C 1.48862 * 122.11893 * 93.60812 * 11 10 9 21 21 C 1.43627 * 119.96695 * 355.83721 * 7 5 4 22 22 C 1.36317 * 107.23114 * 359.52204 * 4 3 2 23 23 C 1.34827 * 124.56825 * 179.70409 * 2 1 3 24 24 O 1.21981 * 127.14997 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.47357 * 270.29627 * 1 2 3 26 26 H 1.09003 * 109.47309 * 30.29876 * 1 2 3 27 27 H 1.09001 * 109.47134 * 150.29805 * 1 2 3 28 28 H 1.08994 * 109.32784 * 222.78363 * 8 7 5 29 29 H 1.09002 * 109.32266 * 342.25476 * 8 7 5 30 30 H 1.08990 * 109.10779 * 297.76329 * 9 8 7 31 31 H 1.09000 * 108.84169 * 178.93146 * 9 8 7 32 32 H 1.08996 * 109.76495 * 161.92503 * 10 9 8 33 33 H 1.09000 * 109.81324 * 41.17504 * 10 9 8 34 34 H 0.97007 * 119.99947 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.48166 * 200.66042 * 20 11 10 36 36 H 1.09001 * 109.48590 * 80.63781 * 20 11 10 37 37 H 1.09001 * 108.87295 * 31.41929 * 21 7 5 38 38 H 1.08997 * 108.87376 * 149.85767 * 21 7 5 39 39 H 1.08005 * 127.99610 * 180.23727 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 8 2.1510 0.9958 0.0000 4 6 3.4615 0.7082 -0.0049 5 6 4.5760 1.6851 -0.0108 6 8 5.7220 1.2987 -0.1263 7 7 4.3182 3.0023 0.1119 8 6 5.4367 3.9703 0.2049 9 6 5.6237 4.6531 -1.0903 10 6 4.3509 5.3922 -1.5364 11 7 3.4428 4.4223 -2.0776 12 6 3.5484 4.0810 -3.3996 13 1 3.4212 3.0525 -3.7035 14 6 3.8189 5.0569 -4.3489 15 7 4.3069 4.7158 -5.5228 16 14 3.4904 6.8543 -3.9604 17 1 4.7401 7.4920 -3.4740 18 1 3.0255 7.5490 -5.1878 19 1 2.4444 6.9507 -2.9108 20 6 2.3899 3.7745 -1.2483 21 6 2.9597 3.4662 0.1584 22 6 3.5769 -0.6501 0.0026 23 6 2.2299 -1.1102 0.0057 24 8 1.8473 -2.2684 0.0122 25 1 -0.3634 0.0053 1.0276 26 1 -0.3634 0.8873 -0.5185 27 1 -0.3633 -0.8927 -0.5092 28 1 5.2122 4.7081 0.9751 29 1 6.3510 3.4403 0.4723 30 1 5.8897 3.9155 -1.8473 31 1 6.4368 5.3726 -0.9948 32 1 4.6009 6.1291 -2.2996 33 1 3.8929 5.8887 -0.6809 34 1 4.4956 5.3978 -6.1863 35 1 2.0727 2.8463 -1.7235 36 1 1.5361 4.4456 -1.1556 37 1 2.3419 2.7014 0.6291 38 1 2.9170 4.3724 0.7626 39 1 4.4813 -1.2405 0.0051 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981056408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:30 Heat of formation + Delta-G solvation = 63.412470 kcal Electronic energy + Delta-G solvation = -25377.893473 eV Core-core repulsion = 21713.490888 eV Total energy + Delta-G solvation = -3664.402585 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.07705 -40.10887 -38.12324 -37.48553 -34.78879 -34.32079 -32.61683 -32.20517 -31.63821 -28.42532 -27.87624 -25.96375 -24.15863 -23.78757 -23.22455 -21.63793 -20.27099 -19.58417 -18.40096 -17.93227 -17.17702 -16.75366 -16.40906 -15.53048 -15.38642 -15.12226 -14.95254 -14.47013 -13.94549 -13.80996 -13.66492 -13.51114 -13.36657 -13.19756 -13.04482 -12.95328 -12.47310 -12.25686 -11.77811 -11.46895 -11.03856 -10.79817 -10.59258 -10.39674 -10.26018 -10.02925 -9.95613 -9.87142 -9.63826 -8.64643 -8.57832 -8.45608 -6.88355 -6.04992 -3.51455 0.60710 1.58718 2.61026 2.76051 3.11480 3.22967 3.35583 3.38889 3.42349 4.38470 4.43504 4.67014 4.81796 4.94714 4.97520 5.05004 5.14028 5.25644 5.26745 5.29248 5.39985 5.58441 5.66233 5.70408 5.79547 5.88104 6.02321 6.16996 6.23062 6.37268 6.43138 6.56046 6.69285 7.03786 7.32106 7.60339 7.91711 8.02626 8.04333 8.30063 8.94196 9.63247 9.99026 11.10221 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.005541 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.084879 B = 5052.312366 C = 5564.607418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.456 5.456 3 O 0.004 5.996 4 C 0.047 3.953 5 C 0.601 3.399 6 O -0.504 6.504 7 N -0.569 5.569 8 C 0.131 3.869 9 C -0.169 4.169 10 C 0.151 3.849 11 N -0.603 5.603 12 C -0.273 4.273 13 H 0.074 0.926 14 C 0.037 3.963 15 N -0.899 5.899 16 Si 0.885 3.115 17 H -0.286 1.286 18 H -0.302 1.302 19 H -0.271 1.271 20 C 0.129 3.871 21 C 0.082 3.918 22 C -0.247 4.247 23 C 0.483 3.517 24 O -0.531 6.531 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.264 0.736 35 H 0.060 0.940 36 H 0.038 0.962 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.392 -1.750 15.103 16.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.221 5.221 3 O -0.006 6.006 4 C -0.011 4.011 5 C 0.385 3.615 6 O -0.380 6.380 7 N -0.299 5.299 8 C 0.011 3.989 9 C -0.210 4.210 10 C 0.024 3.976 11 N -0.327 5.327 12 C -0.401 4.401 13 H 0.091 0.909 14 C -0.164 4.164 15 N -0.539 5.539 16 Si 0.716 3.284 17 H -0.214 1.214 18 H -0.230 1.230 19 H -0.196 1.196 20 C 0.003 3.997 21 C -0.044 4.044 22 C -0.272 4.272 23 C 0.281 3.719 24 O -0.412 6.412 25 H 0.097 0.903 26 H 0.114 0.886 27 H 0.122 0.878 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.267 -2.283 14.888 15.956 hybrid contribution -0.181 1.145 -0.131 1.167 sum -5.447 -1.138 14.757 15.771 Atomic orbital electron populations 1.22109 0.70956 1.05821 1.04113 1.46136 1.05994 1.00290 1.69634 1.84346 1.15355 1.20178 1.80740 1.23505 0.81694 0.96284 0.99638 1.16818 0.85370 0.81357 0.78000 1.90846 1.18843 1.78425 1.49874 1.47382 1.08210 1.05037 1.69298 1.20896 0.88932 0.90560 0.98529 1.21835 1.00441 1.01169 0.97512 1.20683 0.89155 0.91580 0.96168 1.43883 1.32806 1.48140 1.07846 1.18733 1.46795 0.93826 0.80773 0.90861 1.25502 0.97947 0.97989 0.94924 1.69857 1.43498 1.33742 1.06852 0.86819 0.78293 0.86530 0.76751 1.21370 1.23031 1.19618 1.22149 0.90899 0.97418 0.89214 1.22191 0.81931 1.00237 0.99995 1.23245 0.99602 0.93342 1.11014 1.18312 0.86689 0.85477 0.81389 1.90941 1.79173 1.15981 1.55131 0.90318 0.88627 0.87850 0.91144 0.89601 0.89866 0.91905 0.93074 0.94409 0.92636 0.92115 0.94458 0.89963 0.90373 0.79233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.87 11.22 59.84 0.67 1.54 16 2 N -0.46 -5.81 3.68 -69.77 -0.26 -6.06 16 3 O 0.00 0.05 6.83 16.83 0.11 0.16 16 4 C 0.05 0.70 6.86 -36.18 -0.25 0.45 16 5 C 0.60 9.94 7.69 -12.16 -0.09 9.85 16 6 O -0.50 -9.59 16.37 5.37 0.09 -9.50 16 7 N -0.57 -8.62 2.45 -177.39 -0.43 -9.06 16 8 C 0.13 1.88 5.71 -5.70 -0.03 1.84 16 9 C -0.17 -2.95 5.65 -28.92 -0.16 -3.12 16 10 C 0.15 2.95 4.53 -5.23 -0.02 2.93 16 11 N -0.60 -13.04 2.10 -172.00 -0.36 -13.40 16 12 C -0.27 -7.27 9.56 -15.06 -0.14 -7.41 16 13 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 14 C 0.04 1.04 5.32 -17.43 -0.09 0.94 16 15 N -0.90 -26.90 13.97 55.49 0.78 -26.13 16 16 Si 0.89 21.33 24.98 -169.99 -4.25 17.08 16 17 H -0.29 -6.67 6.73 56.52 0.38 -6.29 16 18 H -0.30 -7.49 7.11 56.52 0.40 -7.08 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 20 C 0.13 2.21 6.74 -1.75 -0.01 2.20 16 21 C 0.08 1.09 4.84 -4.58 -0.02 1.07 16 22 C -0.25 -3.69 10.94 -38.70 -0.42 -4.11 16 23 C 0.48 7.48 8.02 -14.66 -0.12 7.36 16 24 O -0.53 -9.64 17.84 4.94 0.09 -9.55 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.10 0.82 8.03 -51.93 -0.42 0.41 16 28 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 29 H 0.09 1.22 7.18 -51.93 -0.37 0.85 16 30 H 0.08 1.80 7.91 -51.93 -0.41 1.39 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 1.13 3.09 -51.93 -0.16 0.97 16 33 H 0.04 0.63 7.59 -51.93 -0.39 0.24 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.06 1.10 7.31 -51.93 -0.38 0.72 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.95 4.91 -51.93 -0.25 0.69 16 38 H 0.08 0.88 7.73 -51.93 -0.40 0.48 16 39 H 0.19 2.60 8.06 -52.48 -0.42 2.17 16 LS Contribution 315.02 15.07 4.75 4.75 Total: -1.00 -34.19 315.02 -5.09 -39.27 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.90 Total: -1.11 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: -0.70 Total: 13.55 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.28 Total: -54.65 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.29 Total: -18.89 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.25 Total: 17.08 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.19 -5.09 -39.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981056408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.687 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds